Lobt039842.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- sip1
- Assembly
- GCA_949987735.1
- Location
- OX465298.1:28820803-28825389[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-93 5.4e-89 300.2 11.6 1 275 420 690 420 690 0.99 2 2 0.23 7.4e+03 -2.0 0.0 156 189 701 733 695 740 0.57
Sequence Information
- Coding Sequence
- ATGTCTGATAATGAGTATGAACGTTTTGAAATAACCGATTATGATCTGGAAAATGAATTCAATCCCAATCGGCCAAGGAGAAAGCAAACCAAACAGCAGCAAATTTATGGTATCTGGGCTGATGATAGTGATAACGAAGAAGAATCTTCTGGCCGTCGTGGTCGCAGTGGCCGAAAAGGCCGCACAGGTTTAGGCGGTACTACCGGTGGTCGTAGCAAAGATTATTCTGCTCCAGTTAGTTTTGTAGCCGGTGGTATACAACAGTCCGGAaagaaaaaagataaaaatgAACAAGCAGATAACCAGGATTATGACGATGATGAAAACCCCATTACCGATGAGGAAGAAGAATTAAATGCTCACCCAGGATTTGGTACTGGAGGTGGGCCTACTCTTATGGATGCAGATTCGACACATACAAGTGACGAATCCGAAGAGGAAATTAAAAAACCTTTACCCTCAAATCAGAAACCTTCGTTTTTTAAACATGGTAATTCGGGTGATAGAGTAGGAGAATGGGAACAACATACACGTGGTATAGGAGCCAAACTTTTACTACAAATGGGTTATCAACCTGGTAAAGGTTTGGGAAAAGAGTTACAGGGTATATCCCAGCCTGTACAGGCTCATGTGCGTAAGGGAAGGGGAGCTATTGGAGCATATGGCCCGGAAACTGCTGCTAGTATAGGAGGCAAAGGTcatataCCCAAAATTGATGAAGATGTACGTGAGACTAAGGAATTCAAGGAAAAACTTAATAAGTGGAAAAAGGCTGGAGATGTTAAACAGGATAAGGCCTCTAAACGTTACTATTACAAATCAGTGGAGGAGGTCTTGGAGAAAAGCAAAAAAACTAATTATATTATCAGCGATAAAATTAGCCAAAAACTTGGCAATGTTCCTGTTATTGACATGACTGGTCCGGAAAAACGTGTCTTAAGTGGTTATCATGCTATTGGTCAAACTAAAATTTTGGATGAAGATTTGTATGAACTAGGAGAAGAACCCAAAAAAACTGTCACTACATTTGCTCTACCCGAACTAATGCATAATCTAAACTTAATTGTAAACATGTGTGAGCAGGATATCATATCCTTGGACACTTCACAAAATACAGCATGTGTAAGACAAGTGGCTCTCGAACAGGAAAAGAGACAGTTGGAAGAAATTGTTAAACTAGAAAGTAATCATATTGATACTTTGGATAAGGTACTCGAAATGGTAGATGAATTGACTGGCAATGATTCCGAATTGAATTTAGACAGAGCTGAGTATATATTCTTAGATTTACAACAAAATTATGCCTCTGAATATAAACAATTTGGCTTGGGTGATTTGGCTGCTGGCATTATAGCTCCTTTGTTAAAGAACCATCTATGCGATTGGAAACCTTTAGAAAATCCTACTTCATGTATAGAGCTTACCAAAAAATGGCGTACAATTTTAGAAACTCATCAAGATCCCCTAACTGAAACACGTTCTAATATTTTTGATCCTTATTCTTCATTAGTATGGGCTGGTGTTATACCCAGTTTTCGTTCTTGTGCGGAATTTTGGGACCCCAAACATCATCAATCTATGGCGGCTTTACTAGATTGTTGGGCTCCCTTATTTCCTACTTGGATATTAGATTCAGTACTAGAACAATTGATATTACCTCGCTTAAGTACAGGTGTTCGCAATTGGGATCCTTTGACGGATACTGTTCCTATACACATTTGGATATTACCTTGGAATTCTATATTGGGTCATAAAATGGAAGAATTTATTTTCCCCACCATACGTGAAAAATTGGGTAATGCTTTACAGGCCTGGATGCCACAAGATCGTTCGGCCAGAGCTATGTTAACTCCCTGGAAGGGAGCATTTGATGATAGTGAAATGCAGGTGTTTCTATTAAAACATATTATACCGAAACTGCAATCGGTTTTCAATGATTTTGTTGTTAATCCATTACAGCAGGATTTGGAACGCTGGAATCAAGTATGGGAATGGCATGAACTAATACCCACCATACAAATGGCTCAGCTATTAGATAAATATTTCTTTCCCCAATGGATGCAAGTTCTTGTTTTGTGGCTTAATCAATCACCCGATTACGTGGAAATTTCCCGTTGGTATACTGGTTGGAAAAGTATGCTTACTGAGGATATTCTTAGAGAACCCAATATCAAAGAGCATTTACGACGTGCTCTTGAAATGATGCATCGTGCTACAGATCAATTAGCATCCTCACCAGCAGCTGCCAATAATGCTGGGCCTATAGGTGCCACAACAGCAACACCAGCACCACCACCGCCACAACCACCACCACCTCCCTCTTTAATGGATATTCAAGTACCCACTCCTACACAATTAGAATTTAAAGAATTGGTATCACGTAAATGTTCGGAAAGGGGTATACTCTTTGCACCTCTTCCAGGGCGTAGAGAATTGGGTAAACAAATATATCGTGTGGGtaaattatattgttatattGATCGTAATGTGTGTATGTTAAGTGATTCAACATTTAAGAATTGGATACCAACAACATTGCCAAACATGTTGGAGCGTTCTATAACGGGTGTATTGAATTAA
- Protein Sequence
- MSDNEYERFEITDYDLENEFNPNRPRRKQTKQQQIYGIWADDSDNEEESSGRRGRSGRKGRTGLGGTTGGRSKDYSAPVSFVAGGIQQSGKKKDKNEQADNQDYDDDENPITDEEEELNAHPGFGTGGGPTLMDADSTHTSDESEEEIKKPLPSNQKPSFFKHGNSGDRVGEWEQHTRGIGAKLLLQMGYQPGKGLGKELQGISQPVQAHVRKGRGAIGAYGPETAASIGGKGHIPKIDEDVRETKEFKEKLNKWKKAGDVKQDKASKRYYYKSVEEVLEKSKKTNYIISDKISQKLGNVPVIDMTGPEKRVLSGYHAIGQTKILDEDLYELGEEPKKTVTTFALPELMHNLNLIVNMCEQDIISLDTSQNTACVRQVALEQEKRQLEEIVKLESNHIDTLDKVLEMVDELTGNDSELNLDRAEYIFLDLQQNYASEYKQFGLGDLAAGIIAPLLKNHLCDWKPLENPTSCIELTKKWRTILETHQDPLTETRSNIFDPYSSLVWAGVIPSFRSCAEFWDPKHHQSMAALLDCWAPLFPTWILDSVLEQLILPRLSTGVRNWDPLTDTVPIHIWILPWNSILGHKMEEFIFPTIREKLGNALQAWMPQDRSARAMLTPWKGAFDDSEMQVFLLKHIIPKLQSVFNDFVVNPLQQDLERWNQVWEWHELIPTIQMAQLLDKYFFPQWMQVLVLWLNQSPDYVEISRWYTGWKSMLTEDILREPNIKEHLRRALEMMHRATDQLASSPAAANNAGPIGATTATPAPPPPQPPPPPSLMDIQVPTPTQLEFKELVSRKCSERGILFAPLPGRRELGKQIYRVGKLYCYIDRNVCMLSDSTFKNWIPTTLPNMLERSITGVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00371025; iTF_01165523;
- 90% Identity
- -
- 80% Identity
- -