Cimp051047.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cordilura impudica
Gene Symbol
sip1
Assembly
GCA_963682025.1
Location
OY821518.1:222096984-222100889[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 0.24 1.5e+04 -2.0 0.0 198 230 248 280 241 282 0.79
2 3 6e-94 3.8e-89 301.7 14.0 1 275 420 690 420 690 0.99
3 3 0.13 8.5e+03 -1.2 0.1 241 266 701 726 694 738 0.60

Sequence Information

Coding Sequence
ATGTCCGACAATGAATATGAACGTTTTGAAATAACTGATTATGATTTGGAAAATGAATTTAATCCCAATAGGCCCAGAAAAAAGCAAACCAAACAACAGCAAATTTATGGTATCTGGGCTGATGACAGTGAAAATGAGGAAGAAGAAACTTCAGGCCGGCGAAGAGGTGGCAGTCGTAAAGGACGCATGGGTTTGGGTGGATCTACTGGAAGTCGTAGCAAAGACTACACAGCACCTGTAAGTTTTGTAGCAGGTGGTATACAACAGTCTGGCAAGAAAAAAGCTCAAGCTGATCATGATCGTGATGACGATGATGAAAATCCCATAACCGATGAAGAAGAGGAATCCAATGCTAGACCGGGATTCGGAACAGGTGGTAGACCTACATTAATGAATGTAGACTCAGCTGATAGTAGTGAAGAATCGGAAGTAGATGTTAAAAAAGCTCCACCACCCCAACATAAACCCTCATTTTCTCGACATGGTGTTTCGCACAATGCCAATGTGGGACAATGGGAACAACATACTCGTGGTATAGGAGCCAAACTTTTGCTTCAAATGGGTTATAAACCTGGCAAAGGTTTGGGTAAAGATCTTCAGGGTATATCTCAGCCGGTGGAAGCACATGTTCGTAAGGGCAGAGGTGCCATAGGAGCTTATGGACCCGAAACTGCAGCTAGTATAGGAGGCAAAGGACATATGCCTCAAATTGATGAAGATGTTCGTGAGGCTAAGGAATTCAAAGAAAAACTTAACAAGTGGAAAAAAGTTGGAGGCGATGCTAAACAGGATAAAGCAACAAAACGTTATTACTACAAATCTGTGGAGGAAGTATTAGAAAAGGGCAAAAAATCGAATTATATCATTAGCGATAAATTAAGCAAAAAACTTGGAAACGTACCCGTTATTGATATGACTGGCCCGGAAAAACGGGTACTCAGTGGTTACCATGCTATCGGCCAATCAAAAATGGTGGATGAAGATTTTTATGAAGTTACCGAACAACCCAAAAAATCAGTCACCACATTTGCTTTACCCGAACTTATGCACAACCTTTCCCTAATAGTGAACATGTGTGAACAAGACATTATAACTTTGGACTCGGCCCAAAATGCTGCCTGTGATAGACAGTTGGCCCTCGAACAGGAAAAGAAACAATTGGAAGAAATCGTCAAGCTCGAAAGTAATCACATAGATACTTTGGATAAGGTTCTTTCGTTAGTAGACGAATTAACATCCAATGAATCGGATATAAATCTAGATAGAGCCGAGCATATTTTTCTAGAAATACAACAGAACTATGCTTCTGAATATAAACAATTTGGTTTAGGTGATTTAGCTGCTGGTGTTATAGCTCCTCTACTCAAAAATCATCTTTGCGAATGGAAACCGTTGGAAAATCCTACCTCTTATGTGGATTTAGTTAAGAAATGGCGTACGATTTTAGAAACTCATCAAGATCTTCAAACGGAAACACGTTCGAATATCTTCGACCCCTACTCTTCTCTGGTATGGGCTGGTGTTATACCCAGTTTTCGTTCTTGTGCTGAATTTTGGGATCCTAAACACCATCAAACGATGGCGGCTCTGCTCGACTGTTGGGCTCCCTTATTTCCTTCGTGGATTTTGGATTCTGTGCTGGAACAGCTGATACTACCACGTTTAAGTGCGGCCGTTAGCATTTGGGACCCCTTAACGGACACCGTACCCATACATATTTGGATTTTACCTTGGAATTCTATATTGGGTCATAAAATGGAAGAATTTATATTCCCCACTATTCGCGAAAAATTGGGTAATGCTTTGCACTCCTGGATGCCGCATGATCGGTCTGCCCGTGCTATGTTAACACCCTGGAAGGGAGCATTCGATGAAAGTGAATTGCAAGTGTTTCTAATGGAACATATTATACCCAAATTACAATTGGTTTTAAATGAATTCTTAATAAATCCATTGCAGCAGGATTTGGAACCTTGGAATCAAGTATGGGAATGGCATGCTCTagtacccaccatacaaatggCACAACTCTTGGATAAATATTTCTTTCCCAAATGGATGCAAGTTCTTGTGCTGTGGCTCAATCAATCACCCGATTATGTGGAAATTTCCCGATGGTATAGCGGCTGGAAAAGTATGTTTTCCGAGGATATGCTAAAAGAGCCCAATATTAAAGAACATTTACGACGGGCCCTCGAAATGATGCATCGCGCAACTGATCAGCTAGCCTCGCCATCGCCTACCAACAATGCAGGGGCAACAAACACAACAGCAATACCTGTACCACCACCACTACAGCCGCCACCGCCACCTTCATTAATAGATTTACAAATTCCGGTACCTACGCAATTGGAATTCAAAGAACTGGTATCACGTAAATGTTCCGAAAGAGGTATATTGTTTGCTCCCCTACCTGGGCGTAGGGAATTGGGTAAACAAATATATCGTGTTGGTAAACTATATTGCTATATAGATCGTAATGTTTGTATGTTGAGTgatacaacatttaaaaattgGATACCAACACCGCTGCAACCAATGTTAGAGCGCGCCATTACGGGcgtattgaattaa
Protein Sequence
MSDNEYERFEITDYDLENEFNPNRPRKKQTKQQQIYGIWADDSENEEEETSGRRRGGSRKGRMGLGGSTGSRSKDYTAPVSFVAGGIQQSGKKKAQADHDRDDDDENPITDEEEESNARPGFGTGGRPTLMNVDSADSSEESEVDVKKAPPPQHKPSFSRHGVSHNANVGQWEQHTRGIGAKLLLQMGYKPGKGLGKDLQGISQPVEAHVRKGRGAIGAYGPETAASIGGKGHMPQIDEDVREAKEFKEKLNKWKKVGGDAKQDKATKRYYYKSVEEVLEKGKKSNYIISDKLSKKLGNVPVIDMTGPEKRVLSGYHAIGQSKMVDEDFYEVTEQPKKSVTTFALPELMHNLSLIVNMCEQDIITLDSAQNAACDRQLALEQEKKQLEEIVKLESNHIDTLDKVLSLVDELTSNESDINLDRAEHIFLEIQQNYASEYKQFGLGDLAAGVIAPLLKNHLCEWKPLENPTSYVDLVKKWRTILETHQDLQTETRSNIFDPYSSLVWAGVIPSFRSCAEFWDPKHHQTMAALLDCWAPLFPSWILDSVLEQLILPRLSAAVSIWDPLTDTVPIHIWILPWNSILGHKMEEFIFPTIREKLGNALHSWMPHDRSARAMLTPWKGAFDESELQVFLMEHIIPKLQLVLNEFLINPLQQDLEPWNQVWEWHALVPTIQMAQLLDKYFFPKWMQVLVLWLNQSPDYVEISRWYSGWKSMFSEDMLKEPNIKEHLRRALEMMHRATDQLASPSPTNNAGATNTTAIPVPPPLQPPPPPSLIDLQIPVPTQLEFKELVSRKCSERGILFAPLPGRRELGKQIYRVGKLYCYIDRNVCMLSDTTFKNWIPTPLQPMLERAITGVLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00892748;
90% Identity
-
80% Identity
-