Lobt051085.1
Basic Information
- Insect
- Leucophora obtusa
- Gene Symbol
- -
- Assembly
- GCA_949987735.1
- Location
- OX465299.1:83296310-83324033[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.9e-11 2.6e-07 32.0 0.0 1 38 586 624 586 629 0.89 2 4 2.4e-13 8.2e-10 40.0 0.0 2 39 641 678 640 681 0.94 3 4 2.9e-17 9.7e-14 52.6 0.0 1 45 695 740 695 740 0.98 4 4 2.9e-19 9.7e-16 59.0 0.0 1 45 747 792 747 792 0.97
Sequence Information
- Coding Sequence
- atgcttgtacgtGGTCGTACAAGCTTTGAAGATGAACTACGAGGTGGACGTCCTAAAACTGCAatagctaaagtccatgatatagtattagacgatcgacgagtgaaaGGTCTTTTGCGTACCGCTGAACAGTTAAAAATCAAAGGTCTTTGTGAAACAGCCGAAAATGCTGATGATTTAAATGATGCTGCCACAGCAACAATAACAGTATCAGAAAATATACAACAAGCTGTCGTTGGTAATATTGTGAATACTACCGTAATACCAGGCCAGCAATCACCCCCAATACCCCACCAATCACATCAACAGCAACAGCAGCAtcaacaacagcagcagcaacaacaacaacatcaacaacaacaacagcagcagcaacaacagcagcagcaacaacaacagcaattGGCAAATACAGCTGTCTTAACACATGCTGTTAGTCCAGGTCCAGCACAGCAATTAGCCACATCCGGACAATTGGTTACATCAACACCTATCAGTACTCCACAACAAACACAACAACAAATTGGGCGAAAATCAAGAGTACGTAAACGTTCTAAATCACCGGACTTACAATTACAACAGCATCAGCAACAACAGAATCAACAACAACATCCCCAGGCaattttaattcaaaatcaaaatCAGGCTGCTATTGTAAGTCTACAACAAACATCTGCTGGTAATTATATACCCGTATCGGGAGTACAAACAGTTACCACAAGTGTAGCTAGCAATCAACAACAACAGACCACAATTGTAACTGCCGACGATTCAGATTCCGAAAATAAACCCACATTGcagaaaatttgtaaaactgAAGCATCATCAGCTTCACCGGCGTCTACATCATCGGCATCAGCATCAAATAATGCTGCAGGTGTAACTACTGTAACAGCACCGGGAACAGCCATCGTAACACAAATTGTAGTAGCAAGAGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGAATGAATGGTGGCATTCTAGGAGTCCCTATGGGCTTTTTAGATTTTGCACCTGAACCACCGGCACCATCAGCAACACCTGTCTCGGTTACAGAACATGTAGATTTATCATGTAACCCCAGCACGGATACAAGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGATAATCATTTGGCTCAACACATGATACAACGGCTCGATCAATCTCCGATGCACTCTATACATCATCAGACTGGTGACGAATCAAATTCGAATCTGGTCCAGCatataaaaagtgaaattatCGATGCcaaacaacaacagcagcaacaacaggcccagcagcagcagcagcaacaacaagCAGCCGCCCACCATCAAGCTCAACAACAACAGTTGCATGCTCAACAATTAGCAGCGCAGCAGGGTCAAACACATCAGCAgcaacaacagcagcagcaaGCAGCTCAtcaacagcagcagcaacaacagcaggcacatcagcaacaacaacaacaccaCCAACAGTCCCACCAACAACATCATCAGGAGATTTCCGGAGCCACCGTCATGGAGATTGATCCGAGCCAAATAAAACATGAGCCGGGAATGATAATAACACCGGAAATTGTTGGTATAATGACAACAGGGCACATGGACATGTATAATTCCGATACGAGCGATGATTCTATGATGATTGCCAATGGTTCACCACACGATCAAAATGAACCCCACTACACCAATTTAGATCAACAACATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACCCTCTGGCAAAGGGCCCACCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGTACTAAATCGTGGAATGAAGACTCTCTCAACAATGCTCTGGAAGCCTTGCGGTCTGGACAGATATCGGCGAATAAAGCCTCGAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCCACCACCTGGACACCGGAGGATTTGGAAAGAGCATTGGAGGCAATACGTGCTGGTCATACATCGGTGCAAAAGGCAAGTGCGGAATTTGGTATACCAACAGGAACTTTATATGGACGTTGTAAACGTGAGGGTATTGAATTATCCCGTTCAAATCCCACACCTTGGTCTGAAGATGCTATGAATGAAGCTTTGAATTCTGTGCGCATTGGCCAAATGTCCATCAATCAAGCTGCTATCCATTACAATTTACCCTACAGTTCGTTATATGGCCGTTTTAAACGTGGCAAATATGATGTGTCGAATATAAGTGGTGTTACTTCCATTAATAATACATCGGGCAATACCTCCGGTAGCATTGAAATTATTGAACACAGTCAAGAGAATTCGTTGCCCATGTTTCAGCAACAATTCCAATATAGTCCATCACCGCATCAACATGGCGGTGGTAATACAACACCGCAACAAAGCCAAACACCACAACATTTACAGCAACATGTGGTGCATATACAACAGCAGCAACATCATCAACAGCCACAACATGCGCAACATATCCAACAGCAGCAAGATGTTGTAACCTCATCAAGTCAGCAACAACAAGTccaacagcagcaacaacatGCCAGCAATTCACAAGCTTCACAGCAACAACAAATTCAACAGATTTATCATCATCACAGTACACCCGAGAGAAGTTGA
- Protein Sequence
- MLVRGRTSFEDELRGGRPKTAIAKVHDIVLDDRRVKGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNTTVIPGQQSPPIPHQSHQQQQQHQQQQQQQQQHQQQQQQQQQQQQQQQQQLANTAVLTHAVSPGPAQQLATSGQLVTSTPISTPQQTQQQIGRKSRVRKRSKSPDLQLQQHQQQQNQQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVASNQQQQTTIVTADDSDSENKPTLQKICKTEASSASPASTSSASASNNAAGVTTVTAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVSVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHSIHHQTGDESNSNLVQHIKSEIIDAKQQQQQQQAQQQQQQQQAAAHHQAQQQQLHAQQLAAQQGQTHQQQQQQQQAAHQQQQQQQQAHQQQQQHHQQSHQQHHQEISGATVMEIDPSQIKHEPGMIITPEIVGIMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNISGVTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQHGGGNTTPQQSQTPQHLQQHVVHIQQQQHHQQPQHAQHIQQQQDVVTSSSQQQQVQQQQQHASNSQASQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_01165452;
- 80% Identity
- -