Lmon004770.1
Basic Information
- Insect
- Leucophenga montana
- Gene Symbol
- -
- Assembly
- GCA_035044765.1
- Location
- JAWNNQ010000656.1:123267-126395[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0018 0.11 13.3 4.7 2 23 223 244 222 245 0.94 2 17 5e-07 3e-05 24.5 1.8 1 23 252 275 252 275 0.96 3 17 0.0062 0.37 11.6 0.8 2 23 312 333 311 333 0.94 4 17 0.099 5.9 7.8 0.9 1 23 415 439 415 439 0.94 5 17 0.56 33 5.5 1.3 1 21 446 466 446 467 0.92 6 17 0.059 3.5 8.6 1.1 1 23 476 498 476 498 0.93 7 17 0.00025 0.015 16.0 1.8 3 23 507 528 506 528 0.93 8 17 0.0017 0.099 13.4 1.3 2 23 536 557 535 557 0.96 9 17 0.16 9.2 7.2 0.0 2 21 584 603 583 604 0.93 10 17 0.0022 0.13 13.1 3.5 1 23 654 677 654 677 0.98 11 17 0.014 0.83 10.5 1.4 2 23 715 737 714 737 0.96 12 17 0.0038 0.23 12.3 2.7 2 23 776 798 775 798 0.94 13 17 0.061 3.6 8.5 0.8 1 23 816 838 816 838 0.95 14 17 0.00067 0.039 14.7 1.3 1 23 844 866 844 866 0.99 15 17 4.7e-06 0.00027 21.5 2.0 1 23 872 894 872 894 0.97 16 17 5.8e-06 0.00034 21.2 1.7 1 23 900 922 900 922 0.98 17 17 0.11 6.2 7.8 0.0 1 22 928 949 928 952 0.88
Sequence Information
- Coding Sequence
- ATGCCAGCAGTAACGATTTGCCTCACCTGTGATACGAGCGCAGCCGCCGAGCTGTATGAAATAAAGTCAACATACACGGAGAAGTATCCCAGAAAGCAACTGCTGGAATTGCTCAAGGAGCTAGTAGAGATTGAACCAAATATGGACTATGAGGCACAGCTGCCACAGCATCTTTGCGGCAACTGCACGAAAAGATTGAACAGCGCCTACGAATTTGTGATACAGGCGCGCGAAGCATACCAGCGACTGCTGGAAAGACTAAAACCGGACTTAAAGTTAGGCACAGATGAATGTTGCAAACAGGATGCTCCGTTGGAGCAGTTTGTTGCTGTTAAACTAGAACCCGGCGGTGAAGACATGACGCCCGTAGAATTCGCTGAAACTCTAATGAAACAGCAAGAAtctgataatgatgatgaaatGCAGCACGATCGTGATGTGTTTGATGAAGGACATAGTGGGAGCAGTTCCGAAGAAAAAGAACAAGATGACCCTTTAACAATAATGAAGCGGAGAAAAGTAAAAACAcaaccaaaagaaaaagttttgcatttcgATGATAAAGATTCTGCCGAAAACTTTAGTTCCAGTGATGATGATGAGCCATTGCTGAAGCGCaaagtaaaaatgcaaaaatctaAAGCGCAGGAAAAGCAAAATACATTGTCATGTAATCAATGCAGTAAAACATTTCGTTTGCGCCGCAGTTTAAACGCTCACAAACAGAAACATCATCCAAAAAGTAATGAGACCCATGCATGTCCAGAATGCAAACGTAAGTTCAGCCGCAAAGACAGTTTACAGGTGCACTTGCGAACAATACACGCACCAAATGATGGAACGCCGCAGCAGCATATCCCAACAATTTCTGAAAGAAAGAAGGCAAAAGAACTCGATTTGAATCTCTGCAAGCCGCATGGTTGCAAGTTGATACAATGCATGATATGCGTGCAACATTTTACGAATATCTCCGAATTACGTAACCATTTGACTGATCATCCCCAATTGGAAACATTCGAGAAACGTACGGAGACACTGCAGGAGATTGCTGAATCATTTTATCCTGATATGAAGGAAGATGTTACAGAAGCGGCATTGTTGGCTCGTATACGTAGAGATCTAAAAGCGGAAAAGTATGTGTATTTCTATTCAATAACAAACCAGGCAGGCTACGAGTTAAGATTGGAAAGTTCAGACAcagatggtgatgatgatggaaatcgaaaaacaaagaaacatttCTACGCGTGCGATTTATGCGAAAATACAAAGTTTGGACGTAGATATCAACTCTTCGAACATCAGCGGGAGCAACATGCCTGGGATGAGGCACAACATGTCTGCCGGCGTTGTGATGCCcgttttgtaaacaagcaggtGCTAGACCATCATTACCAGTCACAATGTCGAAATTCTCAAAAACGCTTTTTGTGCAATAGATGCCCGCTCCGCTTTCGCTGGAAACAGAATCTTAGAGCGCACTACACGGAGCACAAGAATAGAgtgcAATCGAATATTTGCGAGCAGTGCAATCGTTCCTTTAAAGATAAGAAATCGTTGTCGACGCACATACACGCTGTGCACACTGATGCCTCGAATCTTTTACCCTGTCAATGGTGCAATCGGTTATTCTATAGccgtgaaaatttgttaaaacattttaagcGTCACGGTCTGAGGGAGCGCGATTTACCACTGGCCGAAGTACTTCTTAAAGCTACAACACAACCCAATGGAGCCAAGCGCATCAGTTGCAAGGTGTGTCAAGTGCAATTCGGAAGTATTGCAGATTTAAgagtacatatactaatggagcTCAAGTTGAATTTGAGTGCACATCAGAGCTATGAAACAATGGCCAATTATTCAATTACAAACGATGTGGGTTTTGAGTTGCATTTGGATGACTCGGAAACGGATAATGATGAATCGGCAGGAAGTACATCGAACACCACACCATATAAATGTGAAATTTGTCAAGTGCAATGTCGCCGGCGCTATGAAATGTTCCAACATCAGCGCGTAATGCACACATTTGAACCCTTGCCGCATAATTGCCCTAGTTGTATATTTAAAACTGTTTGCAAGagcATAATTGATCATCACCAACGTACGCATTGTCAAAATACAGAGAAGCAACTGAGTTGCAAACACTGCAGCTATAAATTTATGTGGCCAGAAAATTTggaacaacatcaacaaatgcTACATGCTGGTCTATTTGATGACAAGAGTGCTGTTGATGGTAGCAATGCTGATGTAAATGGAGTGACGACCGCGCAGTCAGCACTATCGGACACCAAATCAACATCAACGGAATTGTTAAACTGCCCACATTGCGATCGCACCTATTTGCATCAATCAAGGCTGAATAACCACATACGTGATGTGCACAGTGAAAACAGCGAGgctaataaaaagaagaaaaaggaaTCCGAACGTAAATTTCTTTGCTCACATTGTGGCAAGGAGGAACCTTCGGCTTCCCGCTTGCTCACGCATGTGCGACGACATACTGGtgAAAGACCTTTCAAATGCGACATGTGCGAAATGGCATTTGCACGACACGTTGAGATGATGATACATCGTAGAAAGCACACTGGCGAGAAGCCATACCATTGTACTGTATGTGGCAAGGATTTTGCACGCTCCGACAAACTGAAGCGACACACGCTCATACATAGCGGTCTTAAACCGTATAAATGCACACTTTGCGAGAAGAGCTATCGACAGGCAAAAGATCTCAAGCTGCATATGCAACAGCATACCGGAGAAACGCCATTCGAGTGTGCACCATGCGGTGAACGATTCATAGAGCGTGTTGCACTAGAGAAGCATCGTATTATGCGTGGACATTTCGATGAGATAAAGTAa
- Protein Sequence
- MPAVTICLTCDTSAAAELYEIKSTYTEKYPRKQLLELLKELVEIEPNMDYEAQLPQHLCGNCTKRLNSAYEFVIQAREAYQRLLERLKPDLKLGTDECCKQDAPLEQFVAVKLEPGGEDMTPVEFAETLMKQQESDNDDEMQHDRDVFDEGHSGSSSEEKEQDDPLTIMKRRKVKTQPKEKVLHFDDKDSAENFSSSDDDEPLLKRKVKMQKSKAQEKQNTLSCNQCSKTFRLRRSLNAHKQKHHPKSNETHACPECKRKFSRKDSLQVHLRTIHAPNDGTPQQHIPTISERKKAKELDLNLCKPHGCKLIQCMICVQHFTNISELRNHLTDHPQLETFEKRTETLQEIAESFYPDMKEDVTEAALLARIRRDLKAEKYVYFYSITNQAGYELRLESSDTDGDDDGNRKTKKHFYACDLCENTKFGRRYQLFEHQREQHAWDEAQHVCRRCDARFVNKQVLDHHYQSQCRNSQKRFLCNRCPLRFRWKQNLRAHYTEHKNRVQSNICEQCNRSFKDKKSLSTHIHAVHTDASNLLPCQWCNRLFYSRENLLKHFKRHGLRERDLPLAEVLLKATTQPNGAKRISCKVCQVQFGSIADLRVHILMELKLNLSAHQSYETMANYSITNDVGFELHLDDSETDNDESAGSTSNTTPYKCEICQVQCRRRYEMFQHQRVMHTFEPLPHNCPSCIFKTVCKSIIDHHQRTHCQNTEKQLSCKHCSYKFMWPENLEQHQQMLHAGLFDDKSAVDGSNADVNGVTTAQSALSDTKSTSTELLNCPHCDRTYLHQSRLNNHIRDVHSENSEANKKKKKESERKFLCSHCGKEEPSASRLLTHVRRHTGERPFKCDMCEMAFARHVEMMIHRRKHTGEKPYHCTVCGKDFARSDKLKRHTLIHSGLKPYKCTLCEKSYRQAKDLKLHMQQHTGETPFECAPCGERFIERVALEKHRIMRGHFDEIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00891202; iTF_00890310;
- 90% Identity
- -
- 80% Identity
- -