Lmac014502.1
Basic Information
- Insect
- Leucophenga maculata
- Gene Symbol
- -
- Assembly
- GCA_035044805.1
- Location
- JAWNNP010002837.1:950451-953546[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0026 0.16 12.8 4.7 2 23 216 237 215 238 0.94 2 17 1.2e-06 7.1e-05 23.3 1.8 1 23 245 268 245 268 0.96 3 17 0.006 0.37 11.6 1.1 2 23 305 326 304 326 0.96 4 17 0.0079 0.49 11.3 1.5 1 23 408 432 408 432 0.95 5 17 1.9 1.2e+02 3.8 0.5 1 20 439 458 439 460 0.89 6 17 0.036 2.2 9.2 2.3 1 23 469 491 469 491 0.94 7 17 0.00016 0.01 16.6 2.3 3 23 500 521 499 521 0.93 8 17 0.00057 0.036 14.9 1.1 2 23 529 550 528 550 0.96 9 17 0.021 1.3 9.9 0.0 2 21 577 596 576 597 0.93 10 17 0.0047 0.29 12.0 3.3 1 23 647 670 647 670 0.97 11 17 0.019 1.2 10.1 1.6 2 23 708 730 707 730 0.96 12 17 0.0002 0.012 16.3 2.8 2 23 769 791 768 791 0.94 13 17 0.059 3.6 8.5 0.8 1 23 809 831 809 831 0.95 14 17 0.00044 0.027 15.2 1.5 1 23 837 859 837 859 0.99 15 17 4.5e-06 0.00028 21.5 2.0 1 23 865 887 865 887 0.97 16 17 5.6e-06 0.00034 21.2 1.7 1 23 893 915 893 915 0.98 17 17 0.1 6.3 7.8 0.0 1 22 921 942 921 945 0.88
Sequence Information
- Coding Sequence
- ATGTCAGCTACAACGATTTGCCTTACTTGTGATACGAGCACGGCCACCGAGCTGTATGAAATCAAGTCAACGTACACGGAAAACTATCCGAGAAAGCAGCTGCTGGAATTGCTGAAGGAGCTAGTAGAGATTGAACCAAATATGCTATACGAGACGCAACTGCCACAGCATCTTTGTGGCaactgtatgaaaaaattaaacaacgcCTACGACTTTGTAAGGCAGGCGCGTGAGGCATATCAGCGACTGCTGGATAGTCTACAACCGGACTTAAAGTTAGCTACCGATGAATGTTACAAAGAAGATACGCCTTTGGAGCAGTTTGTTGCTGTTAAATTAGAGCTCTGTGCTGAGGACATGACGCCCGTTGAGTTTGCTGAAACACTTATGAAGCAACATGAATCTGATACGGACAATGATGATGAATTACAGCAAGACTGTGACGTGTTTGATGAAGTTCGAAGTGATAGCAGTTCCGACGAAAAAGAACAAGATGATCCCTTAACAATAATGAAACGAAGAAAAGTAAAAGCACGGCCAGAACATGATGCTAGCGAAAGGTCCAGTTCCAGTGACGATGATGAGCCACTGGTGAAGCGGAAAGTAAAATTGCAAAAGACTAAACAAGAGGTTAAAGCTACGTTATCATGTAGTCAATGCAGTAAAACATTTCGTTTGCGGCGCAGCTTAAACGCTCACAAACAGAAACATCATCAAAAAAGCAACGAGAGCCATGCATGTCCGGAGTGCAAACGTAAATTCAGTCGCAAAGACAGTTTGCAGGTACACTTGAAAACAATACACGCGCCAAACAATGGAACGCCACAACAACATATACCAACAATATCGGAGCGGAAAAAGGCAAAAGAACTTGATTTGAATCTCTGCAAGCCACATGGTTGCAAGTTGATACAATGCATGATATGCGTACAACATTTTACGAATATATCCGAATTGCGTAGCCATTTGACTAATCATCCCCAAGTTGAAACATTCGCGAAACGTGCAGAGTCGCTGGAAGAGATTGCCGAAACATTCTATCCCGATATGAAAGAAGATGTTACCGAAACGGCTTTATTGTCGCGTATACGCAAAGATCTCAAAGCTGCAAATTATGTTGTTTTCTATTCAATAACAAACCAGGCAGGTTACGAGTTAAGATTGGAAAGTTCAGACACTGATGGCGATGAGAACgagagagtaaaaaaaaagaaatatttctacgCGTGCGAATTATGCGATGACACAAAGTTTCGACGTAGGTATCAACTATTCGAACATCAACGAGACAAACATTCCTGGGAGGAGGCACAACATATCTGCCGACGTTGTGATGCGCGTTTCGTCAGCAAGCCGGTGCTAGATCATCATTATGAGTCACAATGTCGCAACTCGCACAAACGGTTTCTATGCAACAGATGCCCGCTCCGTTTTCGCTGGAAACATAATCTTAAAGCGCACTACTTGGAGCACAAGAATAGAgttCAAACAAACATTTGCGAGCAGTGCAATCGCAcctttaaagataaaaaatctTTGTCGACACATATGCACGCTGTACACACTGATGCCTCAAATCTTTTACCCTGTCAGTGGTGCAATCGTTTATTCTATAGCCGCGATAAtttgataaaacattttaagcgTCACGGTTACAGGGAGCGTGATTTACCACTAGCCGAAGTACTACTCAAAGCAACAATACAGCCCAACGGCGCAAAGCGCATCAGTTGCAAGATATGTCAAGTGCAATTCGAACGTATTGCGGACTTAAGAGTGCATATACTAATGGAACTAAAGTTAAATTTAAGCGCACATCAGAGCTACGAATCGTTGGCCAATTATTCAATAACGAATGCAGTGGGCTTTGAGTTGCATTTGGACGACTCGGAAACGGATAATGATGAGACGACAGCAACTACACCGAATACAACAGCTTATAAATGTGAGATTTGCCAAGTGCAATGTCGGCGACGCTATGAGATGTTCCAACATCAACGTGCAATGCATACATTTGAGACCTTGCCACATAATTGCGCTAATTGTATATTCAAAACTGTCTGCAAGAGTATACTGGAGCATCACCAGCGTACGCATTGTCAGAATACGGAAAAGCATTTGAGCTGTAAACACTGCAGCTACAAGTTTATGTGGCCAGAAAATTTAGAGCTACATCAACAAACGCAACATGCCGCCGTAGTTGATGTCAAGAATGCTGTAGATGGTACCAGTGCTGCTGTAAATGGTGAGACGCCGGCGAAGTCAACGCAACCGGATTCCAAATCACTAACCACGGAATTGTTAAACTGTCCACATTGTGATCGCACTTATATGCATCAATCACGGCTTAACAATCATATACGTGATGTGCATAGTGAAAACAGCGAGgctaagaaaaagaagaaaaaggaatCGGAACGTAAATTTCTCTGCTCACATTGTGGCAAGGAAGAACCATCAGCGTCACGCTTGCTCACGCATGTACGACGACATACTGGcgAAAGACCTTTTAAATGCGACATGTGCGAAATGGCATTTGCACGACACGTTGAGATGACGATACATCGAAGGAAACACACTGGCGAGAAACCCTATCATTGTACTGTCTGTGGCAAGGACTTTGCACGCTCCGACAAACTAAAGCGACACACGCTCATACATAGCGGACTGAAACCGTATAAGTGCACGCTCTGCGAGAAGAGCTATCGTCAAGCAAAAGATCTCAAGCTGCACATGCAACAGCATACCGGAGAAACGCCATTCGAATGTGCACCATGCGGCGAACGATTCATAGAGCGTGTTGCGCTGGAAAAACATCGTATTATGCGAGGCCATTTCGATGAAACGAAGTAA
- Protein Sequence
- MSATTICLTCDTSTATELYEIKSTYTENYPRKQLLELLKELVEIEPNMLYETQLPQHLCGNCMKKLNNAYDFVRQAREAYQRLLDSLQPDLKLATDECYKEDTPLEQFVAVKLELCAEDMTPVEFAETLMKQHESDTDNDDELQQDCDVFDEVRSDSSSDEKEQDDPLTIMKRRKVKARPEHDASERSSSSDDDEPLVKRKVKLQKTKQEVKATLSCSQCSKTFRLRRSLNAHKQKHHQKSNESHACPECKRKFSRKDSLQVHLKTIHAPNNGTPQQHIPTISERKKAKELDLNLCKPHGCKLIQCMICVQHFTNISELRSHLTNHPQVETFAKRAESLEEIAETFYPDMKEDVTETALLSRIRKDLKAANYVVFYSITNQAGYELRLESSDTDGDENERVKKKKYFYACELCDDTKFRRRYQLFEHQRDKHSWEEAQHICRRCDARFVSKPVLDHHYESQCRNSHKRFLCNRCPLRFRWKHNLKAHYLEHKNRVQTNICEQCNRTFKDKKSLSTHMHAVHTDASNLLPCQWCNRLFYSRDNLIKHFKRHGYRERDLPLAEVLLKATIQPNGAKRISCKICQVQFERIADLRVHILMELKLNLSAHQSYESLANYSITNAVGFELHLDDSETDNDETTATTPNTTAYKCEICQVQCRRRYEMFQHQRAMHTFETLPHNCANCIFKTVCKSILEHHQRTHCQNTEKHLSCKHCSYKFMWPENLELHQQTQHAAVVDVKNAVDGTSAAVNGETPAKSTQPDSKSLTTELLNCPHCDRTYMHQSRLNNHIRDVHSENSEAKKKKKKESERKFLCSHCGKEEPSASRLLTHVRRHTGERPFKCDMCEMAFARHVEMTIHRRKHTGEKPYHCTVCGKDFARSDKLKRHTLIHSGLKPYKCTLCEKSYRQAKDLKLHMQQHTGETPFECAPCGERFIERVALEKHRIMRGHFDETK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00891181;
- 90% Identity
- -
- 80% Identity
- -