Basic Information

Insect: Leucoma salicis
Gene Symbol: -
Assembly: GCA_948253155.1
Location: OX411826.1:13795781-13798138[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.28 8.4e+03 -2.3 0.3 27 48 10 31 8 33 0.80

2 12 0.0019 57 4.7 0.3 27 48 100 121 96 125 0.88

3 12 3.1e-07 0.0093 16.8 0.1 22 50 156 184 150 188 0.89

4 12 0.00057 17 6.3 0.2 26 48 189 211 185 215 0.89

5 12 0.00012 3.6 8.5 0.0 8 49 242 283 239 286 0.89

6 12 0.53 1.6e+04 -3.2 0.0 25 32 338 345 336 356 0.80

7 12 0.0019 58 4.7 0.0 26 49 413 436 405 441 0.89

8 12 0.00011 3.2 8.7 0.2 26 49 471 494 465 497 0.88

9 12 0.0074 2.2e+02 2.8 0.2 26 48 500 522 495 526 0.87

10 12 0.097 3e+03 -0.8 0.3 26 48 530 552 523 558 0.89

11 12 0.015 4.6e+02 1.8 0.1 27 51 561 585 552 588 0.85

12 12 0.4 1.2e+04 -2.8 0.1 27 45 627 645 620 648 0.71

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.28	8.4e+03	-2.3	0.3	27	48	10	31	8	33	0.80
2	12	0.0019	57	4.7	0.3	27	48	100	121	96	125	0.88
3	12	3.1e-07	0.0093	16.8	0.1	22	50	156	184	150	188	0.89
4	12	0.00057	17	6.3	0.2	26	48	189	211	185	215	0.89
5	12	0.00012	3.6	8.5	0.0	8	49	242	283	239	286	0.89
6	12	0.53	1.6e+04	-3.2	0.0	25	32	338	345	336	356	0.80
7	12	0.0019	58	4.7	0.0	26	49	413	436	405	441	0.89
8	12	0.00011	3.2	8.7	0.2	26	49	471	494	465	497	0.88
9	12	0.0074	2.2e+02	2.8	0.2	26	48	500	522	495	526	0.87
10	12	0.097	3e+03	-0.8	0.3	26	48	530	552	523	558	0.89
11	12	0.015	4.6e+02	1.8	0.1	27	51	561	585	552	588	0.85
12	12	0.4	1.2e+04	-2.8	0.1	27	45	627	645	620	648	0.71

Sequence Information

Coding Sequence: ATGTATCAAAATCTACTGGACTTCATCTGTGACTATTGCTCAAGAACTTTCACAAGAAAATATAATTTACAAAATCATATAGAAAATTGTCATACAAAATGTTCCAGTCGGTGTGATATGTGCGGACAAAGTTATGGCAGCCCCACTGGCTTACTGCATCACATGTTCAGGGGACACAACAGCAATGGAAAACCATTCCCTGAATGCGATCTTTGTGGACGAACCTTCACAAGAAAACCACATATAATATCTCACATGATCACTGTTCATTTGCAAGGTTTAGGTGAAGAAATTAGGTGTAGATTGTGCGATAGAACTTTTACTACAGGTAGAAATTTAAAAAGACATATGAGTCAACAACACAATCCTAATGTTGAATATCCAACGTGCCATTATTGCGATAGAATTTTTAAAGGAAAACATTCTCTTATAGCACACATACACACAGTGCACAGTCTGAATGAGAGACAAGGAGCGAAATGCCATTTATGTGAGAAGGTGTACAGTAACAACCGCAATTTGAAACGACATATTGAAATGTTTCATGGGGATAAATCTGAATTTAAGTGTGATATATGCCCTAAAGTGTACACATCAAATCAGAGTTTGCGTAGACATTTACGAAATACACACAGTACGGATAGCAATGAACAGTTTGAATGTAATTATTGTAATAAAGCCTTTATTGGCAGAAGCAATTATGACAGTCATATCCAATTTAATCATCCAACTTCAGATGTTGATGCTAAGAGTGATGGTAAAAGCGAAGGAGAAATAATCTGCGAGTTATGTCATCAAGTTTACGAAGAAGAGTCTATGCTTCGTCAGCATATAAAAACAGAACATTCTTTCAAAGCATTTTACAAGTATTGCAGAAATGCTTTAATAAAACAACACCAGACTGAGTTTGCTAATAATGTCTATGGGTGTGAGTTTTGCCAACATAACTTTTCAAGTGTATATGAATTAAAAGACCATATGAGAGTAAACCATGACACAGAGTACTCTCTCTCAACCTGCAATGTATGTTTCAATAAGTTTTATTCTAAAGAAAGTATGAAAGCTCACAAAAAAGTTTGTATACCACCACCAGATGTGAAATCGTGCAGTCATTGTGATAAACTGTTTACTGTTATATCTAGTTTAGAATTTCACATTCGAATATTTCACCCCCAAGCTCAAATTGCAGACTCAAACATAACTTCATCTAACATTGTTGAAGAAAACACATCATTCAAGTGTGGTTATTGCAACCGTGTGTACTACAGTGACCGTTCATTGAAACATCATATAAAATTAAAACATACAACTGATGAGCAAGTTGAATGTGAGCACTGTAATAAGATTTGTAGCAATAAGTACTATTTAGCTTCTCATATTAAAATTGTTCACAACAATGATTCATGGTCTCAATGTGAATACTGTGATAAACAATTCAAATCTAAAAGAAATATAAGGAGACATGTTGAATACACACATTTAGGTATGCAAAGATATAAATGTATTGAGTGTGAGACATTGTTCAAAGAGAAACGTAGTCTACGAAAGCATGTTAGAACAAAACATCCAAATTCTGCTTTATTCCCACAATGTCACATCTGTCATAAACGATTTGAATCTGCGAAATCTTGCAAAATACATTTGAAACTATTACATTCTTTTAACATGAATACGTATCCATGCCACCTCTGTTCTGTGTCATTTAGCTCCAACGAGGCATTAAAGATTCATCTTAATATAAAACATTTAGCTGAAGATGAGATATACAAATGTCAAGATTGTAACCTGGTTTTCAAGGGCCAGGACAAATTTGATAACCACAATGAATTATGTCATGTAAATGTAGTTTCAAGTGTAAAGCAGAAAGTATCACCACGGTGCGTTCTCTGTATAAAAGACTTTAGTACCAGGAAAACTTTGAAAAGACATATTAAGAAGTTTCATAGTGAATTTGAAGTGGAAGAGTTGGTGAATTTTGGTTCTAGGGAGAAAATTTTCACCGTTGATTGTGAGGAATGTGTTAAGAATTTTGGGGATGATTTCTATTATAACATATACCAGAAGGTGAAGCATTTGAAAAATTCTGTTATTTTTAAATGTGAGACATGTCACACTTCCTATAGCTCTCTAGAGTATTCGGTACAACGGTACAAATTAAAAAACAGTGATGTGTCTAAAACTAAAGCTATCTTAAGTGAACTGTGTACTACTGAGATGAGCGAGGAAGAGACTGGGTTTTCCAGTGTTGGATTACTTCAAGAGTTGCCAGAAACCACTACAGAAGGACTATTAATTAAAGATGAGCCGGTAGATTTGGAGTATTATGATAAAATGAAAACTGAGCTGGAGTCGCCTTAA
Protein Sequence: MYQNLLDFICDYCSRTFTRKYNLQNHIENCHTKCSSRCDMCGQSYGSPTGLLHHMFRGHNSNGKPFPECDLCGRTFTRKPHIISHMITVHLQGLGEEIRCRLCDRTFTTGRNLKRHMSQQHNPNVEYPTCHYCDRIFKGKHSLIAHIHTVHSLNERQGAKCHLCEKVYSNNRNLKRHIEMFHGDKSEFKCDICPKVYTSNQSLRRHLRNTHSTDSNEQFECNYCNKAFIGRSNYDSHIQFNHPTSDVDAKSDGKSEGEIICELCHQVYEEESMLRQHIKTEHSFKAFYKYCRNALIKQHQTEFANNVYGCEFCQHNFSSVYELKDHMRVNHDTEYSLSTCNVCFNKFYSKESMKAHKKVCIPPPDVKSCSHCDKLFTVISSLEFHIRIFHPQAQIADSNITSSNIVEENTSFKCGYCNRVYYSDRSLKHHIKLKHTTDEQVECEHCNKICSNKYYLASHIKIVHNNDSWSQCEYCDKQFKSKRNIRRHVEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSALFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSNEALKIHLNIKHLAEDEIYKCQDCNLVFKGQDKFDNHNELCHVNVVSSVKQKVSPRCVLCIKDFSTRKTLKRHIKKFHSEFEVEELVNFGSREKIFTVDCEECVKNFGDDFYYNIYQKVKHLKNSVIFKCETCHTSYSSLEYSVQRYKLKNSDVSKTKAILSELCTTEMSEEETGFSSVGLLQELPETTTEGLLIKDEPVDLEYYDKMKTELESP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00889448;
90% Identity: iTF_00889448;
80% Identity: iTF_00889448;