Lcom007998.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- PAXBP1
- Assembly
- GCA_958295575.1
- Location
- OY282464.1:5553535-5569468[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.2 2.7e+03 -1.1 0.0 34 236 292 332 275 361 0.52 2 2 2.7e-09 3.7e-05 24.6 0.0 6 49 519 562 514 570 0.91
Sequence Information
- Coding Sequence
- ATGTCGTTGTTTCGAAAGCCGAAGAAGATTCAGCGTCGGGTGTTTTGtgctgatgatgacgatgatggaGAGCCAGAGGCTCCGCCGCCGCCAGTCATCAGTCAAGAACCCAAGATTTCAAAGAAAACTGCTCTGTTGAGTTTCGCAGATGAAGAAGAAGAAGATGTTGAAGTGTTTAAAGTCAAGAAGTCTTCTCAAAGTAAGAGGTTAGCCAAGAAACGTGAGAAAGAAAAGCAAAAGAGGGATGTGAGAACCGATGGTGATAATAACAAATATGACACTATTGTCATAGAGGAAAAGAACAACCACACTGAGCTCAACAATGACAAACCTAAGCCAAAGAAGAAGGTGTCACTAGAGGGGCTGATTCTGTCCGGCCGGGAGGCGCTCGCGGCTGATGGGGCGGGCGACGTGTCCGACGAGAGCGCCCCTGACGAGGAGGCTGACGAGGACGACAGGGGGTTCCACCGGTACCGCGCCGAGACCGTGAGGGCCGCAATCATGGGCGCCCCGGGCCGCATTCCCGACGCCGCGCTGATACACGCCGCTCGCAAGACCAGACAGCAGGCTCGCGAGTTGGGTGGCGGCGGCGCAGACTACATTCCCGTGAAGTCCGAGTCCACTCCGGGATCCCGACTAGTGCGGGATGACGGTTCCGGGGATGATGAGGAGGAGGGTCGGATACTTGTCCGGGGACTAGATTTGCCTAGTGATAAGCCTAAACGAGGCACAGCAGCAGTATCGGAAGAAGAGCTGGACAGCGAGTCCGAAGAGTGGGTGGCACAACAGCTGCAGAAGGCGCGGCCCGTCCTCGCGGATCTGACTGGTGAAGCAGCAATAGAAGTGAACCCATTCTCGGTAGCGCTGCCGGCGCCTCAGATGTCAGCAGCAACAGAACACTTGCGACCTCTGACGACTGGCTCGCAGCAGCCTTCGACTGCCAACGAGCTGATGGAGGCTCTGAGGAAACGGTTAAGTGAGCTCCAAGTAGAACGCGAAGCGACATCAGAAACTCAAAAGGAACTCCGCGAGAGACTGCTGACTGCGGCGCGGATACGAGAGAGTCGCGCGGCGCGCTGCGGTGAGCTCGATGCGGCCTACAGGAGGGCACAGGCGATACGCGGCTACCTCACTGACCTAATCGAGTGCCTTGATGAGAAGATGCCACAACTGGAGGCGCTGGAAGCGCGCGCGCTGGCGTTACACAAGCGGCGCTGCGAGTTCCTCATCGAGAGGCGACGCGCCGACCTGAGGGACCAGGCGCAAGATGTACTCGCACCAGCTGGTCGAGCTTCAAAGCCAGCAGACAACGAAGAGAAAACACGTCGCGCCGCCGAGCGTGAAGGTCGGCGACGTGCGAGACGTCTCAAGCGAGAAGCTACCGCTGCTGCAGCTGGAGCCACGCTGCCTCACAGAGATGGAGATTCCTCGGACGATGAGCTGCCTCCGCATGAGTTGCACCACTATACTCAGGAGAGAGATGCCATCCGTCAACAGTCAGCTTCATTATTCAGCGATGCTTTACCAGCGTGGCGCAGCGTGGCGGGAGTGTGTGGACGCCTGGCACGCTGGCGAGCTCGTGCTACCTCGTTGTATACGGATGCTTATGTCGCCGACTGCCTGCCCAAGCTCCTGGCGCCTTACGTCAGACATGAGCTCATACTATGGAATCCACTAGCAGATGAAGACAACGAGGACTATGAGAGGATGGATTGGTACAAGTGA
- Protein Sequence
- MSLFRKPKKIQRRVFCADDDDDGEPEAPPPPVISQEPKISKKTALLSFADEEEEDVEVFKVKKSSQSKRLAKKREKEKQKRDVRTDGDNNKYDTIVIEEKNNHTELNNDKPKPKKKVSLEGLILSGREALAADGAGDVSDESAPDEEADEDDRGFHRYRAETVRAAIMGAPGRIPDAALIHAARKTRQQARELGGGGADYIPVKSESTPGSRLVRDDGSGDDEEEGRILVRGLDLPSDKPKRGTAAVSEEELDSESEEWVAQQLQKARPVLADLTGEAAIEVNPFSVALPAPQMSAATEHLRPLTTGSQQPSTANELMEALRKRLSELQVEREATSETQKELRERLLTAARIRESRAARCGELDAAYRRAQAIRGYLTDLIECLDEKMPQLEALEARALALHKRRCEFLIERRRADLRDQAQDVLAPAGRASKPADNEEKTRRAAEREGRRRARRLKREATAAAAGATLPHRDGDSSDDELPPHELHHYTQERDAIRQQSASLFSDALPAWRSVAGVCGRLARWRARATSLYTDAYVADCLPKLLAPYVRHELILWNPLADEDNEDYERMDWYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00851821;
- 90% Identity
- iTF_00851821;
- 80% Identity
- -