Lcom009272.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- Rfx2
- Assembly
- GCA_958295575.1
- Location
- OY282465.1:3800555-3817521[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-38 1e-33 116.9 0.0 3 78 228 303 226 304 0.97
Sequence Information
- Coding Sequence
- ATGTCAGAGATGGGCTTTGAGAATGTGTTCTATTTAGAGAACTTTGAGTGCGCGGGCGACGAGGTTCTGGTGGAGTCTTCGCCGCCTGCTTCACCGGACATGGCAGCGCGGCTCGCGGCTCCTGCACAGGGTGGCGCGGGCAGCGGTGCCTCGCCGAGCGCCGTCCGTGAGCTCATCGTGATACCGGAAATACCCGACTCCATGCATTTGCAGCACGCTATGCAACAGGTATCGAGTACGGTGGTGGAGGTGAACGGGGACAGTTCAGGCCACTCCAGTCCCACGGCGGAAGGGCAGCATACTTACATCACGGTGTCGAGCGAGTTGCAGGGTGCATGGGCTCAGCCAGGCAACAACATCAAGATTGAAGAGCAAAGCGACCAAGAaaGCGAGGGTGGGAACGGCGTCAACTATCACGTGCAATATGTTACGGAGCCGCAAGAGATCTACACGCAAGGTCATCCGACGCATATGGATTCGTTGCGTTCGTACCCTGTTTACGGGGTGACAACGGTGGGCAATGGAACGAGCGCGGAAGGCACGTCCGCCGACAATGGCTGGGGTGGAGCCTCCTCTGCCGAATACACCGCTTATGGCGTCGTGGTGGCAGGCGACGAGGCCGAAGCGCCCGCGTCCCCCGCCACGCCGGCGggcgcgcccgcgccgccgcgcaTGCCGCCCGCCACCGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAGGGCGTGTCCCTCCCTCGCTCAACACTTTATGCTCACTACCTCCGTCACTGCGCGACGCACCGCCTAGAACCCGTCAACGCGGCTTCCTTCGGCAAGCTCATCCGCTCAGTCTTCATAGGCCTTCGCACCAGAAGGCTTGGCACGAGGGGGAACTCCAAGTATCACTACTATGGCATCAGAGCGAAGCCTGGGGTGGAACATGATCATAGTGAGAGTGATTTGAATGAACAGCAAGATAATGTGGATGATAAGACCGATGTTTTGGATCATCAAGAGGGCAGGTCCCGCGATCGTTCGCGCGATTCGACCAGTAGTCCGAACCACGCGCATCGCCAGTACTTGGGCTCCGTATCGCCACCTGAGCCGCCGCTACTCGCCATACACCCACTGCCTGAGGATGTGTCACCTGAAGCTTTGAATGCGCTGAGACGGCATCACAGTTCAAACCCAGCGAAACGACAGTACTTGGGCTCTGTGTGA
- Protein Sequence
- MSEMGFENVFYLENFECAGDEVLVESSPPASPDMAARLAAPAQGGAGSGASPSAVRELIVIPEIPDSMHLQHAMQQVSSTVVEVNGDSSGHSSPTAEGQHTYITVSSELQGAWAQPGNNIKIEEQSDQESEGGNGVNYHVQYVTEPQEIYTQGHPTHMDSLRSYPVYGVTTVGNGTSAEGTSADNGWGGASSAEYTAYGVVVAGDEAEAPASPATPAGAPAPPRMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCATHRLEPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRAKPGVEHDHSESDLNEQQDNVDDKTDVLDHQEGRSRDRSRDSTSSPNHAHRQYLGSVSPPEPPLLAIHPLPEDVSPEALNALRRHHSSNPAKRQYLGSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01084870;
- 90% Identity
- iTF_00444843; iTF_00685166; iTF_00711547; iTF_00123965; iTF_00071155; iTF_01084870; iTF_00425106; iTF_01525661; iTF_00172465; iTF_01285279;
- 80% Identity
- -