Basic Information

Insect: Lerema accius
Gene Symbol: -
Assembly: None
Location: scaffold518:202-42319[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 4.5 1.5e+04 -3.9 0.0 22 31 106 115 104 127 0.77

2 30 0.02 70 3.6 0.1 20 52 160 192 155 194 0.86

3 30 0.05 1.7e+02 2.3 0.1 23 44 191 212 187 219 0.84

4 30 0.051 1.8e+02 2.3 0.2 22 46 246 270 237 276 0.83

5 30 0.06 2.1e+02 2.1 0.0 21 46 273 298 268 300 0.87

6 30 0.00013 0.46 10.6 0.1 21 52 301 332 289 334 0.87

7 30 0.29 1e+03 -0.1 0.1 24 45 445 466 438 475 0.68

8 30 0.49 1.7e+03 -0.8 0.2 21 32 498 509 495 526 0.73

9 30 0.051 1.8e+02 2.3 0.1 18 47 522 552 516 559 0.77

10 30 0.29 9.8e+02 -0.1 0.0 21 45 582 606 577 614 0.74

11 30 0.39 1.3e+03 -0.5 0.1 27 46 709 727 706 734 0.83

12 30 0.049 1.7e+02 2.4 0.1 21 44 788 811 774 815 0.76

13 30 7.1e-05 0.24 11.5 0.0 13 45 828 861 824 865 0.87

14 30 0.00076 2.6 8.2 0.1 8 48 918 958 912 962 0.80

15 30 0.001 3.5 7.8 0.2 21 44 959 982 956 991 0.88

16 30 0.036 1.3e+02 2.8 0.1 21 45 1058 1082 1051 1086 0.88

17 30 0.1 3.4e+02 1.4 0.0 26 52 1089 1115 1086 1117 0.92

18 30 0.46 1.6e+03 -0.7 0.0 22 44 1113 1135 1108 1139 0.83

19 30 0.011 37 4.5 0.2 21 52 1140 1170 1136 1172 0.82

20 30 0.0025 8.5 6.5 0.3 19 48 1219 1248 1202 1252 0.78

21 30 0.0065 22 5.2 0.0 21 44 1249 1272 1245 1276 0.90

22 30 0.19 6.4e+02 0.5 0.2 22 44 1399 1421 1395 1425 0.88

23 30 0.4 1.4e+03 -0.5 0.5 25 51 1425 1450 1422 1453 0.84

24 30 0.0069 24 5.1 0.0 15 51 1480 1513 1470 1515 0.77

25 30 0.022 76 3.5 0.0 22 46 1512 1536 1507 1539 0.91

26 30 0.017 60 3.8 0.2 21 46 1539 1564 1536 1571 0.88

27 30 0.00089 3.1 8.0 0.1 20 46 1594 1620 1591 1623 0.91

28 30 0.024 82 3.4 1.5 21 52 1623 1654 1619 1655 0.87

29 30 0.024 81 3.4 0.1 20 44 1789 1813 1778 1816 0.79

30 30 0.00019 0.64 10.1 0.0 20 45 1817 1842 1805 1849 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	4.5	1.5e+04	-3.9	0.0	22	31	106	115	104	127	0.77
2	30	0.02	70	3.6	0.1	20	52	160	192	155	194	0.86
3	30	0.05	1.7e+02	2.3	0.1	23	44	191	212	187	219	0.84
4	30	0.051	1.8e+02	2.3	0.2	22	46	246	270	237	276	0.83
5	30	0.06	2.1e+02	2.1	0.0	21	46	273	298	268	300	0.87
6	30	0.00013	0.46	10.6	0.1	21	52	301	332	289	334	0.87
7	30	0.29	1e+03	-0.1	0.1	24	45	445	466	438	475	0.68
8	30	0.49	1.7e+03	-0.8	0.2	21	32	498	509	495	526	0.73
9	30	0.051	1.8e+02	2.3	0.1	18	47	522	552	516	559	0.77
10	30	0.29	9.8e+02	-0.1	0.0	21	45	582	606	577	614	0.74
11	30	0.39	1.3e+03	-0.5	0.1	27	46	709	727	706	734	0.83
12	30	0.049	1.7e+02	2.4	0.1	21	44	788	811	774	815	0.76
13	30	7.1e-05	0.24	11.5	0.0	13	45	828	861	824	865	0.87
14	30	0.00076	2.6	8.2	0.1	8	48	918	958	912	962	0.80
15	30	0.001	3.5	7.8	0.2	21	44	959	982	956	991	0.88
16	30	0.036	1.3e+02	2.8	0.1	21	45	1058	1082	1051	1086	0.88
17	30	0.1	3.4e+02	1.4	0.0	26	52	1089	1115	1086	1117	0.92
18	30	0.46	1.6e+03	-0.7	0.0	22	44	1113	1135	1108	1139	0.83
19	30	0.011	37	4.5	0.2	21	52	1140	1170	1136	1172	0.82
20	30	0.0025	8.5	6.5	0.3	19	48	1219	1248	1202	1252	0.78
21	30	0.0065	22	5.2	0.0	21	44	1249	1272	1245	1276	0.90
22	30	0.19	6.4e+02	0.5	0.2	22	44	1399	1421	1395	1425	0.88
23	30	0.4	1.4e+03	-0.5	0.5	25	51	1425	1450	1422	1453	0.84
24	30	0.0069	24	5.1	0.0	15	51	1480	1513	1470	1515	0.77
25	30	0.022	76	3.5	0.0	22	46	1512	1536	1507	1539	0.91
26	30	0.017	60	3.8	0.2	21	46	1539	1564	1536	1571	0.88
27	30	0.00089	3.1	8.0	0.1	20	46	1594	1620	1591	1623	0.91
28	30	0.024	82	3.4	1.5	21	52	1623	1654	1619	1655	0.87
29	30	0.024	81	3.4	0.1	20	44	1789	1813	1778	1816	0.79
30	30	0.00019	0.64	10.1	0.0	20	45	1817	1842	1805	1849	0.87

Sequence Information

Coding Sequence: AAATTTATTTTAACATTAAATTATTGTTTATCCTTTAAATGTTTTTTTAATTATGAAGAGTGGTCTCCAGGCGACAAGCGACGGTCGAAAAGGATGTCACAGACGAAGACACCCCAAGACTATAAACACATGAACGGTGACACTCGTCGGGAAGGAATTGTTGGAGCGTCGAATAAAAAAATGTCATGTCAGTTATGTCCATACAAAACTTTTAGTGTTCCCCGTTTTACAGCACATATGAAGGCCCACGCTGCGAATAAGTCGTTTAAATGTGATCAACGAAGTTTAAATTACCATATGGCAGGACATTCTGGTGAAAAACCATATTCGTGTAATGTGTGTAACAAACAATTTAGTGATAAGCTATGCTTACAAAAGCATTCGAAGTGTCATTCTGGTGTGAAAGTATATTCGTGTGAGCTGTGTATTGAGAAATTTAACTCTCAACCTAATCTGCATGGACACATAAAAAAACATTTAAGTGAAAACCCATATTCATGTGATATTTGTAAACAGATTTTTTATTTGAAATGTAAGTTAAAACAGCATATGGTGATACATTCTGGTACGAAACCATATACATGTAGAATATGCTTTAAGGGATTTAAACGGACGCAGCATTTAACGGAACACACCAAAAGACATTCTGGTGAGAAACTATTTTCTTGTAATGTTTGTGACAAGAGATTTTCATCCAAAGGTAATCTAAAACTACACATGTCGATACATTCTGAGGATAGACCATTTACATGTAGCGTATGCTGTAAGAGATTTAAGTTATCGCAACATTTGAGTGAGCACATGAAAACACATACGGGTGAGAAACCATTTTCATGTGATATTTGTAAAAAGATTTTTGCTACTACGGGCAACTTGGCTGCACACAGGCGATTACATTCTGGCGAGAGACCATATACATGTAGTATTTGTAGCAAGACATTTAAGCGATCGCAACATTTAAAGGGGCACATGAAGATACATAGTGATAAAAAACCTAATATTATTGTTGCTCCAGAATGTATTGTAGAGACAGTTAAGATAAAAAGTACATTTATTTTGTACACAGGTAAAGATTGTTCTCCGGATAATCTGTCCTTAAGAGAGCTGACACAGACGAAGACACCCCAACACTATAACATGAACGATGACACTCGTCGGGAACAAGGAATTGACGGTCCGTCAATTGAAAAGATGTTGTGTCAGTTATGTCCTTATGAAACTACTTGTGTAAAGCAGCTTAAAGCTCATGAAAAAGCTCATTCTGCGCGTAAATCTTTTAAGTGTAGTCAATGTAGTAATCTTAAATACCATATGGCAAGGCATACCAATGAAGAATGTACTTGCCAAGTGTGTAATAAAATGTTTGGTGATAAAATTCGGTTACAACGACATATGAGGTATCATTCTGGTGTTAAAATGTTTTCCTGTGATTTCTGTACTGAGAAATTTAATCGTAAACTTCACTTGCAACAGCATTTAGGAGCACATTTAAGTGAGACACCATATTCGTGTGATATTTGTAAGCAAAGTTTTATTGTTAAAGCTAAATTAAAATTACACATGCGCGCACATTCCGAACGGAAGCAACATATATGTGGGATTTGTTTTAAGAGATTCAAACTGTCGCATTATTTAAGTAAGCACATGAAAACACATACAGGTGAGAAACCATATTCATGTGAAATCTGTAGCAAGAGTTTTACTCACAAGTATTATCTGTGGGGACACATGAAAACACATTCCGGGGAAAGACCATATTCTTGTGATATTTGTAATAAAAGTTATACGCTGAGGGCTAACCAATTAAGACACATGAAAACGCATTCTGGAGAAAAGCCATATTCTTGTGATTTTTGCACGAAAAGTTATACTCGGAAAGTTAGTTTATTGTTTTGTGCCACGAGTTTAACCATGTATACTCCACCTTGCCTTACCTTAATCTATGTTGAGAGTGTTTTTTTTTTGTGCGCAGATAAAGATTGTTCTTCAGATGAAGATCTACCTTTAACAGAGCTGTCACAGACGAAGAAACTCCAAGACTATAACCACATGAATGATGACACTCTGTCGATTGATGATAAAATGTCACATGATGATAGTAATGATGATGATATATTGCTTCCTTGTAATATCTGTAATGTTTTTATTGCAAAATCCTTTTTACAAAGACATTTGCAAACACATTCCGTAGAGGAACCTAAGAGTAATTTAATTAATCATTTAACGATACAATCAGGTGAGATGCCATATACATTTACTGTTGGCTATCAATCTGGGAATATTAAATCACATGTTTGTAAGGTTTGTAATTTAATGTTTACTGCGAAGTCAGAGTTACAGAAACATTTGCGAACACATTCTGTAGAGAAACCATATACATGTAGTATCTGTTCTGAAGGGTTCGCCCGTGTGGTTGATTTGACTAAGCATATTAATGCACACAACGTGATTTATTCAACTAGTTCTTGTGATAAGACGTCTCAAAAGCCTAATTCAGAGAAACATTCTAAGGAGAAACCATTTACATGTAATATTTGTTTAGAGGATTTCGACAAGTTGAGGTATTTAAGGAAGCATATTAAGGCACACAACGTACTTTATAAATGTAATCATTGTGAAAAAGCTTTCGCGGAAAAAAGCAATTTGGACAACATTTGTTCCGAGGGATTTACCCGTCTGGGACTTTTAAGGAAACACATAAACACACATAACAAACTCCATGCGTGTAATCTGTGTCACAAGAAATTTACTCATAAGTGCAATTTAGAAAAACACGTCATAACACATTCTGGAGAGAAACCCTTTACATGTAATATTTGTTCTAGAAGTTTCAAGAAGCCGGCAAACTTAAGTATGCACATGAAAATACATTCTGATGAGAAACCACATGCCTGTCATATTTGTACGTCAACATTTAGTGAAAAGTGTAATTTAAAAAGACATATGACAGAGCTGACACAGACGAAGACACCCCAACACTATAACATGAACGATGACACTCGTCGGGAACAAGGGATTGATGCACCGTCGATTGACAAGATGTCGTGTCAGTTATGTCCTTATGAAACTACTTGTGTAAAGCAGCTTAAAGCTCATGAAAATGCTCATTCCGCGCGTAAATCTTTTACTTGTAGCAAGTGTAGTTACATCGCAACTCGTAAGATACATTCAGGTGAAACGCCATATTCATGCCAGATTTGTAGCAAGGAATTTAAAAATAAAATTCGTCTGCGACAACACTTCGAAACCCACTCTGGCGGGTATGCGTGTGATATTTGTAAGAAGGTTTGCACTACTAAAGGCAAATTAAAAAACCATTTGTTGTTACATTCAGTAGAGAAACCATTTACATGTAATTTTTGTTCGAAGGGATTTAAACGAATGGATTATTTAAAGATACATCTTAAGACACATGCTTCTGAAAATTCTGAAGCTTGTTATGTATGTAATGCACTGTTTTTAAAGTGTAATTTAAAAAGACATTTGCTAACACATTCTGTAGAGAAACCATATGTATGTGAAATTTGTTCCAAGGGTTTCATACAATTGGGACGTTTAAAAGTACATATGATTACGCATGAAAAACTATACGGATGTGAGATTTGTGAAAAGAGGTTTTCTCATAAATGTAATTTGGATAAACATGTCATAATACATTCGGGAGAAAAACCATATTCTTGTTCAGTTTGCTCTAGGAAATTCAAAAAACCGGCTAATTTACGCAATCATATGAGGATACATTCTGGTGAGAAGCCACATGCATGTCACATCTGTAACGCTACTTTTAGCTTGAAGTGGAATCTAAAAAAACATGCTCACGCTGCGAATAAGTCGTATAAATGTCATAAGTGTAATTATATGACAATGTATAGAAGTAAAATCGAAGTCCATATGAAAATACATCTCAGGGAAAAACCATTATTCGTGCGACATGAAGATTGTTCTCCGGATGATCTGACCTTAAGAGAGCTGTCACAGACGAAGACTCAACACTATAACATGAACGATGACACTCGTCGCGAACAAGGAATTGACGGACCGCCGATTGATAAGATGTCGTCTGTTAATTTTCGACGTTTCTTTGCACATTTAAAGGCCCACTCGGGGACTGAATCTTTAAAATGTCATAAGTGTAGTTACATGTCAATAAATAGAAGTAAATTCGAAGACCATATTATGATATCACATCCCGGTGAGAACCCATATTCGTGCAACGTGTGTAAATATCCGTTTAAACGTATAAATACATTGCATCGACATTTAAGGGAACATTCAACGTGTGATTTTTGTAATAAAAGCTATAGGTGCAATGAAAGACTATATGAACATCTAAGAATACATTTCAGTAAAAAGCCCTATTCATGTGATATTTGTAACAAAGAATTTATTAGTAAATATGTGCTAGAAAAACACGCGGTAACACATACTGGAGAGAAACCATATTCTGATCAGATGCCGTTTAAATGTAATATTTGTTTTAAGGTATTTGGAAATGTGAAATGTTTACAGAAACACGTCGCGTCACACATGATTGAGAAACCATATTCATGTAAAATTTGTAACAAGGGATTTATTATATTTCGTTATTTGAAAAAACATTTAGAATGTCATTCTGGAGAGAGACCATATACATGTAGCGTTTGTGGTAGAAATATAAAACGACTGGAAAGTCTAAAAGCACATATGAAAATACATACTGGTGACAGACCATATCCTTGTGACATTTGTGATAAAAGATTTGCTTCAAAGTCTAAATTAAAAAACCATTTAATGGTACATTCTAGTGAGAAACCATATACATGTAACATTTGTGATAAGACTGCTAAAAGGTTAAGTGATTTAAGGTCACACATGCAAGTACATTCTGGTGAAAGACCATATTCATGTTCTATATGTAACAAGAGATTTCGTCGACCATCTGAGAAACGGCAGCACTTAAAGACACATTCTCGTGTAAAGCCCACGAAATATTCTGGAATTAAAATTTTACAGATGCACTTGAAAAGACATACTGATGAAGATTGTTCTCCGGATGATCTGTCCTTAAGAGAGCTGTCACAGATGAAGACACCCCAACACTATAACATGAACGATGACACTCGTCGGGAACAAGGAATTGACGGACCGCCGATTGACAAGATGTCGTGTCAGTTATGTCCTTATGAAGCTGTTAATTATCGACGTTTCTTTGCACATTTAAAGGCTCACGCTGCGAATAAGTCGTTTAAATGTGATCAGTGTAGTTATATAACAGTTACTAGGAGAAGTTTGGAATATCATATGGCAGTACATTCTAGTGAAAAGTCGTATTCGTCTCACGTATCTGACAGTGAACAAAAACTAAATAAATCAAAGCAAGTACATTCTGGAGAGAAACCATATACATGTAGTATATGTTGTAAGGAATTTAAAAATGGAACGCCTTTAAAGGAACACATGAAAACACATTCAAGTGAAAAACCATATTCATGTGATATTTCTAATAAGAAATTGAATCAGAGCATTAATCTACAGAGGCACATGAACACACATAGTGTGGGTATTCCTGAAGCAGCTAGGATCAAGGCGATAGAACAGGCGACAGATTTCGACGGCTCCAGAATAGTTGGTGGCGCCGTCGCTGGTCTAGGACAGTTTCCGCATTTGGGTGGCTTAGTAATTACTCTTCAATCCGGACTGACTTCAGTATGTGGCTCTTCATTACTCAGCAACACGAGGCTCGTGACTGCTGCTCACTGCTGGTTTGATGGTAATTGA
Protein Sequence: KFILTLNYCLSFKCFFNYEEWSPGDKRRSKRMSQTKTPQDYKHMNGDTRREGIVGASNKKMSCQLCPYKTFSVPRFTAHMKAHAANKSFKCDQRSLNYHMAGHSGEKPYSCNVCNKQFSDKLCLQKHSKCHSGVKVYSCELCIEKFNSQPNLHGHIKKHLSENPYSCDICKQIFYLKCKLKQHMVIHSGTKPYTCRICFKGFKRTQHLTEHTKRHSGEKLFSCNVCDKRFSSKGNLKLHMSIHSEDRPFTCSVCCKRFKLSQHLSEHMKTHTGEKPFSCDICKKIFATTGNLAAHRRLHSGERPYTCSICSKTFKRSQHLKGHMKIHSDKKPNIIVAPECIVETVKIKSTFILYTGKDCSPDNLSLRELTQTKTPQHYNMNDDTRREQGIDGPSIEKMLCQLCPYETTCVKQLKAHEKAHSARKSFKCSQCSNLKYHMARHTNEECTCQVCNKMFGDKIRLQRHMRYHSGVKMFSCDFCTEKFNRKLHLQQHLGAHLSETPYSCDICKQSFIVKAKLKLHMRAHSERKQHICGICFKRFKLSHYLSKHMKTHTGEKPYSCEICSKSFTHKYYLWGHMKTHSGERPYSCDICNKSYTLRANQLRHMKTHSGEKPYSCDFCTKSYTRKVSLLFCATSLTMYTPPCLTLIYVESVFFLCADKDCSSDEDLPLTELSQTKKLQDYNHMNDDTLSIDDKMSHDDSNDDDILLPCNICNVFIAKSFLQRHLQTHSVEEPKSNLINHLTIQSGEMPYTFTVGYQSGNIKSHVCKVCNLMFTAKSELQKHLRTHSVEKPYTCSICSEGFARVVDLTKHINAHNVIYSTSSCDKTSQKPNSEKHSKEKPFTCNICLEDFDKLRYLRKHIKAHNVLYKCNHCEKAFAEKSNLDNICSEGFTRLGLLRKHINTHNKLHACNLCHKKFTHKCNLEKHVITHSGEKPFTCNICSRSFKKPANLSMHMKIHSDEKPHACHICTSTFSEKCNLKRHMTELTQTKTPQHYNMNDDTRREQGIDAPSIDKMSCQLCPYETTCVKQLKAHENAHSARKSFTCSKCSYIATRKIHSGETPYSCQICSKEFKNKIRLRQHFETHSGGYACDICKKVCTTKGKLKNHLLLHSVEKPFTCNFCSKGFKRMDYLKIHLKTHASENSEACYVCNALFLKCNLKRHLLTHSVEKPYVCEICSKGFIQLGRLKVHMITHEKLYGCEICEKRFSHKCNLDKHVIIHSGEKPYSCSVCSRKFKKPANLRNHMRIHSGEKPHACHICNATFSLKWNLKKHAHAANKSYKCHKCNYMTMYRSKIEVHMKIHLREKPLFVRHEDCSPDDLTLRELSQTKTQHYNMNDDTRREQGIDGPPIDKMSSVNFRRFFAHLKAHSGTESLKCHKCSYMSINRSKFEDHIMISHPGENPYSCNVCKYPFKRINTLHRHLREHSTCDFCNKSYRCNERLYEHLRIHFSKKPYSCDICNKEFISKYVLEKHAVTHTGEKPYSDQMPFKCNICFKVFGNVKCLQKHVASHMIEKPYSCKICNKGFIIFRYLKKHLECHSGERPYTCSVCGRNIKRLESLKAHMKIHTGDRPYPCDICDKRFASKSKLKNHLMVHSSEKPYTCNICDKTAKRLSDLRSHMQVHSGERPYSCSICNKRFRRPSEKRQHLKTHSRVKPTKYSGIKILQMHLKRHTDEDCSPDDLSLRELSQMKTPQHYNMNDDTRREQGIDGPPIDKMSCQLCPYEAVNYRRFFAHLKAHAANKSFKCDQCSYITVTRRSLEYHMAVHSSEKSYSSHVSDSEQKLNKSKQVHSGEKPYTCSICCKEFKNGTPLKEHMKTHSSEKPYSCDISNKKLNQSINLQRHMNTHSVGIPEAARIKAIEQATDFDGSRIVGGAVAGLGQFPHLGGLVITLQSGLTSVCGSSLLSNTRLVTAAHCWFDGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00887576;
90% Identity: iTF_00887576;
80% Identity: iTF_00887576;