Basic Information

Insect: Lerema accius
Gene Symbol: -
Assembly: None
Location: scaffold114:317307-320049[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0013 4.6 7.4 0.3 21 52 266 297 258 298 0.83

2 11 0.012 41 4.3 0.0 21 46 294 319 290 325 0.83

3 11 0.00018 0.6 10.2 0.2 21 48 322 349 317 355 0.84

4 11 0.24 8.3e+02 0.2 0.0 21 44 350 373 345 377 0.85

5 11 0.00013 0.46 10.6 0.5 21 47 378 404 370 410 0.83

6 11 0.017 59 3.8 0.0 21 52 406 437 401 439 0.85

7 11 0.62 2.1e+03 -1.1 0.0 21 38 434 451 430 462 0.70

8 11 0.00027 0.92 9.6 0.0 21 44 462 485 458 488 0.88

9 11 0.011 36 4.5 0.1 21 44 512 535 494 545 0.83

10 11 0.00014 0.48 10.5 0.1 20 45 565 590 556 596 0.89

11 11 0.36 1.2e+03 -0.4 0.1 23 44 596 617 592 621 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0013	4.6	7.4	0.3	21	52	266	297	258	298	0.83
2	11	0.012	41	4.3	0.0	21	46	294	319	290	325	0.83
3	11	0.00018	0.6	10.2	0.2	21	48	322	349	317	355	0.84
4	11	0.24	8.3e+02	0.2	0.0	21	44	350	373	345	377	0.85
5	11	0.00013	0.46	10.6	0.5	21	47	378	404	370	410	0.83
6	11	0.017	59	3.8	0.0	21	52	406	437	401	439	0.85
7	11	0.62	2.1e+03	-1.1	0.0	21	38	434	451	430	462	0.70
8	11	0.00027	0.92	9.6	0.0	21	44	462	485	458	488	0.88
9	11	0.011	36	4.5	0.1	21	44	512	535	494	545	0.83
10	11	0.00014	0.48	10.5	0.1	20	45	565	590	556	596	0.89
11	11	0.36	1.2e+03	-0.4	0.1	23	44	596	617	592	621	0.78

Sequence Information

Coding Sequence: ATGCATCACCAAACTGACCCTTATAATTTAAAAATCGAATACATAGAAAAAGATAATGTCAAGACTGATGATCATGGTGTAGTCTGTAATGTAAAGACAGAAAAAACAAATTATAACTACAATATCAATGTCATTAAGGTAGAAAAAGATGATATAGTCACAGAGAAAACTGTAAAAGATACTGGCAATGTATATTCCCATTGTATGTCTGAAAAAACTATTCTTTATGATATAAAAGTTGAACATGTGGATGAGGATAATCCTAATAATGCTCAAAATGGAAATAAAAATCATAATGAACTGTATTTACATGGCTTAGATAGAAATACAATCAATAATGATGATAGGATTACAGATAATGATACAGTTAGTGAGGAAACTATGAATAATAGACGTATAAATCAAGAGAATATGGTCAATTCGCCTAAATGTCATGAAGCTCCAGTTGTTAACTGTATCAAAGTAGAAAAGTGTAACATGTTCAGTGATGTTGGTTACAGTAATGAACTTACAAGTAATGATAATAAGGTTCACAATAACAATTATAAAGGTGAAGATTCTCCTTCAAATGTCAATGTTGTGAAGCAAAGAAATGAAAAGCCTAAGTGTAACATCAAAAAAATTAAGAAAAAATCAAGAATACAGAAGAATCTAGGTCAAGTGAAGATCGCTTGTAGCCACAAATCATTAAATAAACCTCATTCTAGCAATATAAAAAAAATATATAATTGTGATAACTGTGAATATAAAACTAAAAATAAGCAACATCTAACATTACATACCAGAACACATTCTGGAGAGAAACCATATGCATGTCACATATGCAAAAAAGAATTTAGTCGCAAAAATAATTTAAAATGCCATTTAAGAATTCATTCCGGTGAAAAACCATATTCATGTGATATTTGCGAAAAAGGTTTTAATCATAAAAGTAACCTAAAAAATCATGTGAGAACTCATACTGCAGAAAAACCATATTCCTGTGAAGTATGCAGCGCGTCATTTTGTCAAAAGGGCAATCTTATGAGGCATTCGGTAATACATTCTGCTGAAAAGCCGTTTTCTTGTGAATTATGTAAAAAATCTTTTAATACAAAATATGACTTAAAAAGTCACTTGAGGCAACATTCTGGTGAAAGGCCATATTCTTGTGAAATTTGTAAAAAAGCATATACTGAAAAACGAGATCTACGTCGACATTCTAGAATACATTCTGATGAAAAGCCATTTCCTTGTACTGTCTGTGACAGGGGATTTACTGACAAAAGCAGTTTAAAAAAACATCTAAGGTTACATTCAGGTGAAAAGCCATATTCTTGCGATGTTTGTAAAGAATCTTTCAGTCGAAAAGATAAACTGAACATTCATATTAGAATACATTTGACAGAGAAGCCCATTACCTGTAGTATGTGTTATAAAGTATTTAATGAACACAGTTCTTTAATGACACATATGAACTCCTATTCGTGTGATGTGTGCAAGAAATCATTTTGTCGCCCAAATAAACTAAAAATACATTTTAGGGTACATTCTGGGGAGAAACCGTTTTCCTGTGGTATTTGTGACCAGTCATTTTGTCAAAAACCTGATTTACTAAGGCACACAAAAACACATTTAGGTGAATTTGCTTGTGATGTCTGTAAAAAGGCATTTAGTGAAAAATGTAGTCTTCAAAAACATTTGAGGACACATTACAGTGAAAAACCATATTCTTGTAATATATGTTTTAAATCGTTTAGTCGAAAGTATAATTTAAAAACTCATTTAATAATACATTCTGGTGAGAAACTACATTCATGTGAAATTTGTAACATATCTTTTACTCGAAAGTCTGGTCTCGTTAGACATTTGACAACTCATGCTGATGAAAAGTAA
Protein Sequence: MHHQTDPYNLKIEYIEKDNVKTDDHGVVCNVKTEKTNYNYNINVIKVEKDDIVTEKTVKDTGNVYSHCMSEKTILYDIKVEHVDEDNPNNAQNGNKNHNELYLHGLDRNTINNDDRITDNDTVSEETMNNRRINQENMVNSPKCHEAPVVNCIKVEKCNMFSDVGYSNELTSNDNKVHNNNYKGEDSPSNVNVVKQRNEKPKCNIKKIKKKSRIQKNLGQVKIACSHKSLNKPHSSNIKKIYNCDNCEYKTKNKQHLTLHTRTHSGEKPYACHICKKEFSRKNNLKCHLRIHSGEKPYSCDICEKGFNHKSNLKNHVRTHTAEKPYSCEVCSASFCQKGNLMRHSVIHSAEKPFSCELCKKSFNTKYDLKSHLRQHSGERPYSCEICKKAYTEKRDLRRHSRIHSDEKPFPCTVCDRGFTDKSSLKKHLRLHSGEKPYSCDVCKESFSRKDKLNIHIRIHLTEKPITCSMCYKVFNEHSSLMTHMNSYSCDVCKKSFCRPNKLKIHFRVHSGEKPFSCGICDQSFCQKPDLLRHTKTHLGEFACDVCKKAFSEKCSLQKHLRTHYSEKPYSCNICFKSFSRKYNLKTHLIIHSGEKLHSCEICNISFTRKSGLVRHLTTHADEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00887582;
90% Identity: iTF_00887582;
80% Identity: iTF_00887582;