Basic Information

Insect: Lerema accius
Gene Symbol: -
Assembly: None
Location: scaffold114:317307-320049[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00085 0.052 14.0 5.0 1 23 242 264 242 264 0.98

2 14 9.9e-05 0.0061 16.9 6.0 1 23 270 292 270 292 0.98

3 14 1.2e-07 7.3e-06 26.1 2.7 1 23 298 320 298 320 0.99

4 14 7.1e-05 0.0044 17.4 1.0 1 23 326 348 326 348 0.94

5 14 1.3e-06 8.1e-05 22.8 3.1 1 23 354 376 354 376 0.98

6 14 7.9e-06 0.00049 20.4 1.2 1 23 382 404 382 404 0.98

7 14 9.8e-08 6.1e-06 26.3 0.9 1 23 410 432 410 432 0.98

8 14 2.3e-07 1.4e-05 25.2 0.6 1 23 438 460 438 460 0.98

9 14 0.00032 0.02 15.3 0.7 2 21 467 486 466 487 0.94

10 14 1.3e-05 0.00078 19.7 3.8 1 23 488 510 488 510 0.98

11 14 4.1e-06 0.00025 21.3 2.3 1 23 516 538 516 538 0.98

12 14 4.7e-06 0.00029 21.1 3.0 1 23 542 564 542 564 0.97

13 14 1.9e-07 1.2e-05 25.5 2.3 1 23 570 592 570 592 0.98

14 14 1.5e-06 9.3e-05 22.6 1.6 1 23 598 620 598 620 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00085	0.052	14.0	5.0	1	23	242	264	242	264	0.98
2	14	9.9e-05	0.0061	16.9	6.0	1	23	270	292	270	292	0.98
3	14	1.2e-07	7.3e-06	26.1	2.7	1	23	298	320	298	320	0.99
4	14	7.1e-05	0.0044	17.4	1.0	1	23	326	348	326	348	0.94
5	14	1.3e-06	8.1e-05	22.8	3.1	1	23	354	376	354	376	0.98
6	14	7.9e-06	0.00049	20.4	1.2	1	23	382	404	382	404	0.98
7	14	9.8e-08	6.1e-06	26.3	0.9	1	23	410	432	410	432	0.98
8	14	2.3e-07	1.4e-05	25.2	0.6	1	23	438	460	438	460	0.98
9	14	0.00032	0.02	15.3	0.7	2	21	467	486	466	487	0.94
10	14	1.3e-05	0.00078	19.7	3.8	1	23	488	510	488	510	0.98
11	14	4.1e-06	0.00025	21.3	2.3	1	23	516	538	516	538	0.98
12	14	4.7e-06	0.00029	21.1	3.0	1	23	542	564	542	564	0.97
13	14	1.9e-07	1.2e-05	25.5	2.3	1	23	570	592	570	592	0.98
14	14	1.5e-06	9.3e-05	22.6	1.6	1	23	598	620	598	620	0.97

Sequence Information

Coding Sequence: ATGCATCACCAAACTGACCCTTATAATTTAAAAATCGAATACATAGAAAAAGATAATGTCAAGACTGATGATCATGGTGTAGTCTGTAATGTAAAGACAGAAAAAACAAATTATAACTACAATATCAATGTCATTAAGGTAGAAAAAGATGATATAGTCACAGAGAAAACTGTAAAAGATACTGGCAATGTATATTCCCATTGTATGTCTGAAAAAACTATTCTTTATGATATAAAAGTTGAACATGTGGATGAGGATAATCCTAATAATGCTCAAAATGGAAATAAAAATCATAATGAACTGTATTTACATGGCTTAGATAGAAATACAATCAATAATGATGATAGGATTACAGATAATGATACAGTTAGTGAGGAAACTATGAATAATAGACGTATAAATCAAGAGAATATGGTCAATTCGCCTAAATGTCATGAAGCTCCAGTTGTTAACTGTATCAAAGTAGAAAAGTGTAACATGTTCAGTGATGTTGGTTACAGTAATGAACTTACAAGTAATGATAATAAGGTTCACAATAACAATTATAAAGGTGAAGATTCTCCTTCAAATGTCAATGTTGTGAAGCAAAGAAATGAAAAGCCTAAGTGTAACATCAAAAAAATTAAGAAAAAATCAAGAATACAGAAGAATCTAGGTCAAGTGAAGATCGCTTGTAGCCACAAATCATTAAATAAACCTCATTCTAGCAATATAAAAAAAATATATAATTGTGATAACTGTGAATATAAAACTAAAAATAAGCAACATCTAACATTACATACCAGAACACATTCTGGAGAGAAACCATATGCATGTCACATATGCAAAAAAGAATTTAGTCGCAAAAATAATTTAAAATGCCATTTAAGAATTCATTCCGGTGAAAAACCATATTCATGTGATATTTGCGAAAAAGGTTTTAATCATAAAAGTAACCTAAAAAATCATGTGAGAACTCATACTGCAGAAAAACCATATTCCTGTGAAGTATGCAGCGCGTCATTTTGTCAAAAGGGCAATCTTATGAGGCATTCGGTAATACATTCTGCTGAAAAGCCGTTTTCTTGTGAATTATGTAAAAAATCTTTTAATACAAAATATGACTTAAAAAGTCACTTGAGGCAACATTCTGGTGAAAGGCCATATTCTTGTGAAATTTGTAAAAAAGCATATACTGAAAAACGAGATCTACGTCGACATTCTAGAATACATTCTGATGAAAAGCCATTTCCTTGTACTGTCTGTGACAGGGGATTTACTGACAAAAGCAGTTTAAAAAAACATCTAAGGTTACATTCAGGTGAAAAGCCATATTCTTGCGATGTTTGTAAAGAATCTTTCAGTCGAAAAGATAAACTGAACATTCATATTAGAATACATTTGACAGAGAAGCCCATTACCTGTAGTATGTGTTATAAAGTATTTAATGAACACAGTTCTTTAATGACACATATGAACTCCTATTCGTGTGATGTGTGCAAGAAATCATTTTGTCGCCCAAATAAACTAAAAATACATTTTAGGGTACATTCTGGGGAGAAACCGTTTTCCTGTGGTATTTGTGACCAGTCATTTTGTCAAAAACCTGATTTACTAAGGCACACAAAAACACATTTAGGTGAATTTGCTTGTGATGTCTGTAAAAAGGCATTTAGTGAAAAATGTAGTCTTCAAAAACATTTGAGGACACATTACAGTGAAAAACCATATTCTTGTAATATATGTTTTAAATCGTTTAGTCGAAAGTATAATTTAAAAACTCATTTAATAATACATTCTGGTGAGAAACTACATTCATGTGAAATTTGTAACATATCTTTTACTCGAAAGTCTGGTCTCGTTAGACATTTGACAACTCATGCTGATGAAAAGTAA
Protein Sequence: MHHQTDPYNLKIEYIEKDNVKTDDHGVVCNVKTEKTNYNYNINVIKVEKDDIVTEKTVKDTGNVYSHCMSEKTILYDIKVEHVDEDNPNNAQNGNKNHNELYLHGLDRNTINNDDRITDNDTVSEETMNNRRINQENMVNSPKCHEAPVVNCIKVEKCNMFSDVGYSNELTSNDNKVHNNNYKGEDSPSNVNVVKQRNEKPKCNIKKIKKKSRIQKNLGQVKIACSHKSLNKPHSSNIKKIYNCDNCEYKTKNKQHLTLHTRTHSGEKPYACHICKKEFSRKNNLKCHLRIHSGEKPYSCDICEKGFNHKSNLKNHVRTHTAEKPYSCEVCSASFCQKGNLMRHSVIHSAEKPFSCELCKKSFNTKYDLKSHLRQHSGERPYSCEICKKAYTEKRDLRRHSRIHSDEKPFPCTVCDRGFTDKSSLKKHLRLHSGEKPYSCDVCKESFSRKDKLNIHIRIHLTEKPITCSMCYKVFNEHSSLMTHMNSYSCDVCKKSFCRPNKLKIHFRVHSGEKPFSCGICDQSFCQKPDLLRHTKTHLGEFACDVCKKAFSEKCSLQKHLRTHYSEKPYSCNICFKSFSRKYNLKTHLIIHSGEKLHSCEICNISFTRKSGLVRHLTTHADEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00887857;
90% Identity: iTF_00887857;
80% Identity: iTF_00887857;