Basic Information

Insect: Leptothorax acervorum
Gene Symbol: -
Assembly: GCA_035220615.1
Location: JASTWQ010000037.1:289887-298950[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.044 7.7 8.6 3.1 1 23 1316 1338 1316 1338 0.97

2 19 0.036 6.4 8.8 0.5 2 23 1373 1394 1372 1394 0.96

3 19 0.00021 0.037 15.9 0.9 1 23 1461 1483 1461 1483 0.96

4 19 0.0011 0.2 13.6 0.7 1 23 1486 1508 1486 1508 0.98

5 19 1.7e-05 0.003 19.3 0.9 2 23 1556 1578 1555 1578 0.96

6 19 0.0075 1.3 11.0 3.1 1 23 1584 1606 1584 1606 0.96

7 19 0.0014 0.25 13.3 0.7 1 20 1612 1631 1612 1636 0.94

8 19 4.2e-05 0.0074 18.1 1.3 1 23 1710 1732 1710 1732 0.97

9 19 0.00045 0.079 14.8 5.0 1 23 1788 1810 1788 1810 0.97

10 19 0.00064 0.11 14.4 0.7 1 20 1815 1834 1815 1836 0.94

11 19 0.11 19 7.4 0.3 2 23 1847 1868 1847 1868 0.97

12 19 6.5e-05 0.012 17.5 0.6 2 23 1907 1928 1906 1928 0.97

13 19 5.9e-05 0.01 17.6 1.6 1 23 1933 1955 1933 1955 0.95

14 19 0.0025 0.45 12.5 1.7 1 20 1961 1980 1961 1983 0.93

15 19 1e-05 0.0019 20.0 0.4 1 23 1999 2021 1999 2021 0.95

16 19 1.2e-06 0.00021 23.0 0.6 1 23 2027 2049 2027 2049 0.98

17 19 9.2e-05 0.016 17.0 0.2 1 23 2055 2077 2055 2077 0.97

18 19 0.054 9.7 8.3 6.9 1 23 2083 2105 2083 2105 0.96

19 19 0.012 2.1 10.4 0.6 1 20 2111 2130 2111 2132 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.044	7.7	8.6	3.1	1	23	1316	1338	1316	1338	0.97
2	19	0.036	6.4	8.8	0.5	2	23	1373	1394	1372	1394	0.96
3	19	0.00021	0.037	15.9	0.9	1	23	1461	1483	1461	1483	0.96
4	19	0.0011	0.2	13.6	0.7	1	23	1486	1508	1486	1508	0.98
5	19	1.7e-05	0.003	19.3	0.9	2	23	1556	1578	1555	1578	0.96
6	19	0.0075	1.3	11.0	3.1	1	23	1584	1606	1584	1606	0.96
7	19	0.0014	0.25	13.3	0.7	1	20	1612	1631	1612	1636	0.94
8	19	4.2e-05	0.0074	18.1	1.3	1	23	1710	1732	1710	1732	0.97
9	19	0.00045	0.079	14.8	5.0	1	23	1788	1810	1788	1810	0.97
10	19	0.00064	0.11	14.4	0.7	1	20	1815	1834	1815	1836	0.94
11	19	0.11	19	7.4	0.3	2	23	1847	1868	1847	1868	0.97
12	19	6.5e-05	0.012	17.5	0.6	2	23	1907	1928	1906	1928	0.97
13	19	5.9e-05	0.01	17.6	1.6	1	23	1933	1955	1933	1955	0.95
14	19	0.0025	0.45	12.5	1.7	1	20	1961	1980	1961	1983	0.93
15	19	1e-05	0.0019	20.0	0.4	1	23	1999	2021	1999	2021	0.95
16	19	1.2e-06	0.00021	23.0	0.6	1	23	2027	2049	2027	2049	0.98
17	19	9.2e-05	0.016	17.0	0.2	1	23	2055	2077	2055	2077	0.97
18	19	0.054	9.7	8.3	6.9	1	23	2083	2105	2083	2105	0.96
19	19	0.012	2.1	10.4	0.6	1	20	2111	2130	2111	2132	0.90

Sequence Information

Coding Sequence: aTGGAGATGAAAATGAAGCAAACGAGGAAATTGCTGGAGCTTCTGCGGCAGCAAgTAGATAAATTGCATCTATTGCTGACTACCGCTTCCGTTAATCCGTCGGAGATTTTGGCTGCAAAGTCGATACTCTACGAGCAACTGCATTCTTTAACTCAGAGGTTTAACAATTTAGCAGGCGACGATAATTGCGACAATGAAGAGGCAACTGTAAAGTTTGCTAACGcagaaacaaatttaaaatatattactctattgaaaaatattgacGAGCTTATTAATGATATTAAGTATGACAATATTGATAGCAATGCAGCCAAACAAAAGACAGATTTACTGCTCGATAATTTTGTGTTGGTTTTAAGAGTATTGGAAGATTTAGAGTGCTTGCCGTTGAAGCAGGGACTTCAAGATTGTCTGGACTATGTTAGAGAAATGAGCACAGCGAACGAGATTGAGGATCTTCAAAATATAAAGGAACTGGGTACTTCGATATTGGAGATACTCAAACCACTACAGAATTACCGAAAAAGTTTAACGTCTGCTTTCCTGTCACAGAAGCTAGCTTTATATACCTCTCAACTATGCACGTCATTCGAGATGTTAGTACAACTGGCTCAGGAGCAACATCAGTTAAACGCaccaatttatGCTTGCAAGAAGTATATTTGCGAAAGAACATGCACATGCTGCGAAATGATTTTGAACTTGTTGAATGGTCCCAACCCATCGCCGGAAAAGGAAATTTGCGAGAGGGAGAATCATTTCGTCTACAGAATGGATTTGGCATTAGACATTGTATTAGAAatatcgagaaaaacgcgtGAGGAACAACTATCCGAATGCTCGGAACTGTGGTTGAGACTGGAGGATGTCTTCTCTCATGCTATGGCAATCACTCAAGTGTGTCAGCCGTATAACTTTAAAGCCATAACTGGTTCATGCCAGTCCATAGTGTTGGAATATGAGAAACTAAAACAGCAATTACTATCGGAAACCCCAGATGAGGCGTTAAACAATTTATTCACGCATACCTTGACTGACGCTCTTCATCGTTTGGAACGTAAAGTTAATATAGCGGTATTAACGCTCGCGATGGAGGTGTTCAGTAATCCTTTCGTAGCTTTGAAAAAGCTCGTTATGACGTGCGGAAATTCGTTAAGCGCGAAAAGAAGATCGAAGAGCGATTTAAATGATCTCATAGAAGACTTTGATCAAATCTTTGATCAAACTATGCAAATTGGAATATTTGCGATCGCTTGTTGCAAAGACAAGAACCGCAATAACAAAATTCGTAATTGTCTCGCGGGATTCGAATCCTTAGAAACTGAATTAATTTCTGCTATAACTTCCTTCTATCTGCATCCAGATAACAAAGAAATGCGTTCCAGTGTCAAGTTGTTGACTACGCAATGGCAAACAGAGATGAATAAGTTTCAAAATTCTGTAAATCTCATCATAAACTCGGCTGCCTTCTGTCAAGTAGTTATGGACGATCTTCAAGAACGTGTAAGGACAATCTCAGATTGTCTGGATAACAGAGAGCCAGTAACGCAGCTTCAAGTACATGGTATCGTTCAGCGTGCTTCAGCTTTATCTAGTCAAGTCACAGCGATCGTAACTGACATTGGTCTTCAAAACATTGATTGTCAAACGATAATGATGACGAGAGAATTGAAAGCGGctatATATGAAGCCAACAAAGCTGCCAAAACCCTTTTGGTGGAAAACGCAACGGAGCCTCAACAATTGCGGGTGATAAAACGGTGTGAATTAATATTGAATGTCGTTCAAAGATTGCAGCCCGCCTTATCTATAATTATGAACAATACGACACAGGAAAAATCTGCGAGAGGCCAAAAAGATTCTAGTCATGGTAGCGTATCAAATGCCATGAATTTTCCATCTACAATTTACGGTTTGCCGCGTGATGAAAATAGTTTAGCTTACATTAGAACACCCTATACAGTAAAAACGCACAAACCGCAGGTGTCCATTCAACCGGCAAACAGTGTAGTACAGAAACCTTTGGACCTGTCGTATTTGATACCTTACATAAAGAACGGCCGTACATTGCGCAGCGAGCATTCTATTATGTACAATACGCCTCATAAGAGTAAAGATATAGCGGAGCCAGCCGTTAAAAACGAGACGTCCCCTAGGAATCTATCCAGCATTAGACAACATCTTTTTAGCAGAGATAGCTTCAATATTCACGTTGACTTCGATATAACTGAAGAAAGCATGGATTTAACAgCTGCCTTAGAGAAGATAACTTCTGCGTCCACGTTGGAAAATGCAACGCTCTCGTCGGACCAATTATCAAAAGTAGAAAACATATCTTTGCAGAGCGTAAATAAGAAATCTGTTTTCAACATTGTGGAAAAACTATGTCAAACTGGTAAGCCAGAAACGGAAAGCTGTTTAAATGAATCCGCGATAACGGAGATAACGGAGAAGATGAGCAAATGTGCCATATCTGGTGGCGGTGACGCATCTCTGATCATGGAATCGTGTCAAAAGCTCAATAGCGTTCGACCTCCAAATAAGATACAAAAGTCGACCTCGGAACAGCATGAGTGGTGGGTGAAGGAAGACGGTGCGCGGGATCAGCGAAGAAGAGCGAGACCGGACAGCTCGATTCGTTCCCAGATCGGTCCACGTCCAAGTCAGTCCGCCGAGCAAAACATGGACGCCGTGGAGATAAGTGCGTCGGGTCCGCCGCAGGGCGAGGACGCGATCGCGTCCGGCATGAAGATATGCCGCGTCTGCCTGCTCGGCAACCTGATGATGCGCGATCTTTTCCTGGAGAGCGAGGTCGCGTCCCTGTCGGCGAAGGCGATGAGCTTCGCCAACGTTAAGATGTTACCAGGTGACGGTCTACCAGCACAGGTGTGCTGCATGTGCGCCGACAAGTTGGAGTCGGCATACGAGTTTAAATTACAAGTGGAACAAGCCGACAATGTTCTTCGAGGAAAGCTCGTCGGCGGAATAATAAAGGAGGAGTTGTTTCTTAATGAAGTCGAAATACACTTAGACGGCGAGAGGAATGACAGTATAGGAGAGATAAATGTCAGTGCTGATTACGAATCTACCACCACAGTGTTGCCAGTCGATTCAGCAGGTGACaagaattttctgaaaaatcagTTAATGATTTTGGAAGCTGAGAAATTGGCAGAGACAGAGGAATTGCAACAAGATTCAGAACAAGATAACTCACAAGAAATCACGCAAGAAAGCATTGTGGAAGAATTGCAGCAAGAATTAGCCGGCGCAGAAGACAATGATATGTCAGATGCTATCGATGAATCTAGGATTGAAGAACCTTCCAGCGACGAGAATATCATTCGGAGTTGCACAGATGCAATTCCAACAGAGGAACATGATTACATTATGCAGCAATGTAGTTTGCCTGCTGAACGACTCTCCCTTCAGGAAGAAATGCAGGAAAATGTATCAGAACTTGAACAAGACACAGTAGAATGCCAAGAGACACTGTCTGAACAAGATCAAGAGATTCAAGTTGAAGAAATTCAAGAGATTCAGGATGAGCAAACCCAAGAGACTCAGGCTGAGCAAAACCAAGAGATTCAGACTGAAATAAACCAAGAGATTCAGGCTGAAATAAATCAACAGATTCAGGCTGAAATAGATCAACAGATTCAGGCTGAATTAAATCAAGAAGCTCAAGCTGAGCAGGAGAATCAAGCTGAGCAAAATCAAAATGACAAGGAGGTATTATACAAGGAGGAAACACCCAAAGCTGATACTAATGAGCTAGTAATGGAACAAGAATTATCCCAGAATGAAACCAGAAGAAGTAAACGTAGATTGGCTCGTCGGACATTCACCGAGCGGGATTCCGACGAGGagaattatttcgaaaatctgAATCTCAGTTCTCGATTGAAAAAAGCGCAGGCAGATAAAGCGGAGAAGATTTTTTTCATGTGTTACTTGTGTGATAAGCAGTTTCTTTCGAAGAGCGTCCTGAAAGAACATATGCATTCCCACGAAGAAGTGAGAAAAACACTAGCTCTGAAGAAAACACCGGAGAAACCGCAGAAGGTGCAGACCAGTGTCGCGAAGACGCCGCCATCCGGAAAGAAAGCCAACAAGTGCCCTTATTGTGGTAAAGAGTATCTGTACATAATCTCGTTTACCAAACACATTAAACAACACGAGCGAGAGCGGGAGGAAGCGAAGGAGGATCCGATGCCGCTCGAGATATCGTTCCATGAGGATGAGAACAGTCTAGACTTCGATAATGGCAATAAATCGGATGGCGAATGCAAGAAGCGAAAGAGAGGATATACAGCCGACGATGCCGCGAGCGACAGCGATCAGGATAAGAGACGAAAACGCAGTCACGTTGAGGAGTTTGCATGTGATAAATGTCCCGAAAAATTCAACACAAAGCGAGGCTTGCAAAAGCATTCGATCACGCATGTTAGCTTCGAGTGCAGCGTGTGCAACGAAGAGTACGATACTCTGGAACAACTGAGAAATCATCGAACGAAGCACGTGGTCGAAGGAGTGCTTACCGAACAGGACTTGGAAGAGGACATGAAGCAGATGACGACCAAGAGCGAGAACATCAATGAAGACATCAAGAACATAGAGGTCGAGGAGAACGGCGAACCCGCCGGAAACACAAAGGAACTGAAGTGCCCGACGTGTTCGATGACGTTTTCGCGCAAGAAAGCGCTGTCCAGACACATTGAGACGATGCACTCCAGCACCCGCTCTTACGAATGCAAGATATGCTGTCAACAATTTACACGGAAGGATCTCCTGCGCAGGCATGCCGAGCAGCACGCACGAGTGAAGACCTACAAATGTACCCAATGTAATAAGACCTTCGGCAATGAGCTCACGCTGAGAAATCACCTGGTTGCCACGAATCACAAGACATTCATACATGGGCAGGAGTACGATCCGAACAAGCGTATAAAGCGCGTGGCGGCGAGAGCAGCGCAGAAGATCATCGACAAGATCAAGACGGAGGACGGTCTCGAGGATTACGACGACGATAACGACGACAATGTCGATTACGACGCCAAGTTGGATGGGCATTATCGCCGTAAGCGCGACGCTACACCAAAGAAGTACAGTTATAAGAAAGAGTTTGAGTGCGCGACCTGTAACAAGAGGTACAGCTCGAAGCAAGCGTTGACAAAGCACATGGAGCAGCATGTAAAAGATGAAAAAGCGGAAAAGGCAGCGGAGAAGGCGGCAGAGAAGCTGAGGAAGGCCGCTTTGGAAAAGAAGGAGGCACAGAAGACGAGCAGCATAGGCGATAACGATGATGACGATAACGACTCTGACTTCGAGAGCGGCCTCGACTGGCCGATGGACAGTCACGAATGTACCACGTGCAAGAAACGATACAGTACGAAGAAGTCGCTGCTGCGCCACCAGCTGCTACACGAGGAGCCGAACTTCGAGTGTGATATCTGCAACGTAAAGTTCTACCGCAAGGACAAGCTGAAGGCACACTACGACAAGTGTTCCGAGAAGAATCCCGATCAGGTGAGGAAGTGCAACATCTGCGGCGACAGTTTCGAAAACAACGAGATCCTGCGCGAGCACAGAGCCAAGCATGTCACCGAGGGTATCTTAACGGAGGAAGATCTGCGGGACATCGAGCCGAAATCCGAAGAGAAGAAACCGGGCGAGAAGATCGGCCGGAAGAGGAGGACCGATATTGTGGGGCTCGAGTGTACCGAATGCAACAAACAGTATACTTCCAGAAAGGGTCTATTGCGGCACATTCAGGTGCACGAGGGCAAGAAATACTTGTGCGACATATGCCCGAAGAAGTTCTATCGGCGGGAACACCTGAAGATCCACGTGGCCAAGCACAACATGATCAAGCCGTACAAATGCACCCGCTGCAGCAAGCGCTTCATCAAGGAGGAACAGCTCAACAATCATTTGCCTAAGCACGATCGCACGTTCAAGAAGAACAAGGAGACCGACAGCTCCAAGAGATTCCTCTGCGAGATCTGCAGCAAGAGCTTCACGCAATCGACGACGCTGATAGCGCATCTGCGCGCCCACAACGGTATCAAGCCGTTCGTGTGCGAGGTATGCTCCAGGCCGTTCACCACTAACGCCTACTTGAAGATGCATATGCGCACGCACACGCAGGAACGTCCGTACATCTGCCAGTACTGTTCGCGAGCGTTCGCGCGTGCCGACACCTTGGCGAATCATTTGACGTCGCACACTGGCGAGGCCAAGTATCACTGCAAGTGCTGTCCGAAGAACTTCCGACGATTGAAATCGCTGAAGGAGCATATGTTCATTCATACGGGTCAGCGGCCTTATGAGTGTCCAACTTGCGACAGAAAATTCAACAATAATGGCAGCCGCTATGCGCACAGCAAGCGGTGCAAGCAGAATCTTTTGCAGAATCAGAACCGGGCGCAGCAGATGATCCAGCAGACGacacagcagcagcagcagcagcaacagcaacagcatcaacagcagcagcaacagcagccaCAGCAAGTGCAGATACAAGTACAGCAACAGCCGCATGCGGTCAGGTTGCATCAAACCACGATCGGCCAGGCACAAGTAGTCAAGGCGCAGAACATCAAAACGATCGCTATAACGAGACCGGCTGAGGCTACCACGGTAACCACAACGCAACAAGTTATGCAGCATCAGGAGATATTAATGCCTCTAATCCTGCCGCTTACCGTCACTCTCACCGATGTAGGCGAGGAGGTGATACTACCCGAGGGTACAAAGATATACACCACCTCTTAA
Protein Sequence: MEMKMKQTRKLLELLRQQVDKLHLLLTTASVNPSEILAAKSILYEQLHSLTQRFNNLAGDDNCDNEEATVKFANAETNLKYITLLKNIDELINDIKYDNIDSNAAKQKTDLLLDNFVLVLRVLEDLECLPLKQGLQDCLDYVREMSTANEIEDLQNIKELGTSILEILKPLQNYRKSLTSAFLSQKLALYTSQLCTSFEMLVQLAQEQHQLNAPIYACKKYICERTCTCCEMILNLLNGPNPSPEKEICERENHFVYRMDLALDIVLEISRKTREEQLSECSELWLRLEDVFSHAMAITQVCQPYNFKAITGSCQSIVLEYEKLKQQLLSETPDEALNNLFTHTLTDALHRLERKVNIAVLTLAMEVFSNPFVALKKLVMTCGNSLSAKRRSKSDLNDLIEDFDQIFDQTMQIGIFAIACCKDKNRNNKIRNCLAGFESLETELISAITSFYLHPDNKEMRSSVKLLTTQWQTEMNKFQNSVNLIINSAAFCQVVMDDLQERVRTISDCLDNREPVTQLQVHGIVQRASALSSQVTAIVTDIGLQNIDCQTIMMTRELKAAIYEANKAAKTLLVENATEPQQLRVIKRCELILNVVQRLQPALSIIMNNTTQEKSARGQKDSSHGSVSNAMNFPSTIYGLPRDENSLAYIRTPYTVKTHKPQVSIQPANSVVQKPLDLSYLIPYIKNGRTLRSEHSIMYNTPHKSKDIAEPAVKNETSPRNLSSIRQHLFSRDSFNIHVDFDITEESMDLTAALEKITSASTLENATLSSDQLSKVENISLQSVNKKSVFNIVEKLCQTGKPETESCLNESAITEITEKMSKCAISGGGDASLIMESCQKLNSVRPPNKIQKSTSEQHEWWVKEDGARDQRRRARPDSSIRSQIGPRPSQSAEQNMDAVEISASGPPQGEDAIASGMKICRVCLLGNLMMRDLFLESEVASLSAKAMSFANVKMLPGDGLPAQVCCMCADKLESAYEFKLQVEQADNVLRGKLVGGIIKEELFLNEVEIHLDGERNDSIGEINVSADYESTTTVLPVDSAGDKNFLKNQLMILEAEKLAETEELQQDSEQDNSQEITQESIVEELQQELAGAEDNDMSDAIDESRIEEPSSDENIIRSCTDAIPTEEHDYIMQQCSLPAERLSLQEEMQENVSELEQDTVECQETLSEQDQEIQVEEIQEIQDEQTQETQAEQNQEIQTEINQEIQAEINQQIQAEIDQQIQAELNQEAQAEQENQAEQNQNDKEVLYKEETPKADTNELVMEQELSQNETRRSKRRLARRTFTERDSDEENYFENLNLSSRLKKAQADKAEKIFFMCYLCDKQFLSKSVLKEHMHSHEEVRKTLALKKTPEKPQKVQTSVAKTPPSGKKANKCPYCGKEYLYIISFTKHIKQHEREREEAKEDPMPLEISFHEDENSLDFDNGNKSDGECKKRKRGYTADDAASDSDQDKRRKRSHVEEFACDKCPEKFNTKRGLQKHSITHVSFECSVCNEEYDTLEQLRNHRTKHVVEGVLTEQDLEEDMKQMTTKSENINEDIKNIEVEENGEPAGNTKELKCPTCSMTFSRKKALSRHIETMHSSTRSYECKICCQQFTRKDLLRRHAEQHARVKTYKCTQCNKTFGNELTLRNHLVATNHKTFIHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDDDNDDNVDYDAKLDGHYRRKRDATPKKYSYKKEFECATCNKRYSSKQALTKHMEQHVKDEKAEKAAEKAAEKLRKAALEKKEAQKTSSIGDNDDDDNDSDFESGLDWPMDSHECTTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLRDIEPKSEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCSKRFIKEEQLNNHLPKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPFVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMIQQTTQQQQQQQQQQHQQQQQQQPQQVQIQVQQQPHAVRLHQTTIGQAQVVKAQNIKTIAITRPAEATTVTTTQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIYTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01406730;
90% Identity: iTF_01407572;
80% Identity: -