Ldol065957.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- -
- Assembly
- GCA_954871275.1
- Location
- OX940986.1:9876419-9902723[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.00012 0.04 16.5 1.2 1 23 249 271 249 271 0.96 2 29 2.8e-05 0.0088 18.5 1.2 1 23 284 306 284 306 0.98 3 29 0.00035 0.11 15.0 1.4 1 23 328 351 328 351 0.97 4 29 0.018 5.7 9.7 0.3 2 23 358 380 357 380 0.96 5 29 0.84 2.7e+02 4.4 0.1 1 23 455 478 455 478 0.93 6 29 0.00087 0.28 13.8 1.3 1 23 509 532 509 532 0.95 7 29 0.16 50 6.7 0.7 3 23 540 561 539 561 0.96 8 29 5.6 1.8e+03 1.8 1.5 1 23 571 593 571 593 0.96 9 29 0.00086 0.27 13.8 1.0 2 23 633 655 632 655 0.96 10 29 7.9 2.5e+03 1.3 0.5 3 23 702 724 700 725 0.87 11 29 0.0045 1.4 11.6 0.1 2 23 734 756 734 756 0.95 12 29 0.0074 2.3 10.9 0.4 1 23 762 785 762 785 0.95 13 29 0.0017 0.54 12.9 2.5 1 23 793 815 793 815 0.97 14 29 0.0015 0.47 13.1 0.6 2 23 881 903 880 903 0.95 15 29 0.00028 0.089 15.4 1.7 2 23 910 931 909 932 0.94 16 29 0.0091 2.9 10.6 3.2 1 21 950 970 950 971 0.95 17 29 1.6e-05 0.0051 19.3 0.5 1 23 990 1013 990 1013 0.97 18 29 0.0069 2.2 11.0 0.4 1 23 1016 1039 1016 1039 0.91 19 29 0.95 3e+02 4.2 0.6 2 23 1046 1069 1045 1069 0.91 20 29 0.3 96 5.8 1.0 1 23 1076 1099 1076 1099 0.94 21 29 0.0056 1.8 11.3 1.3 2 23 1137 1158 1137 1158 0.97 22 29 0.01 3.3 10.4 2.1 1 19 1163 1181 1163 1185 0.92 23 29 0.28 90 5.9 0.3 2 23 1313 1335 1312 1335 0.94 24 29 0.32 1e+02 5.7 4.0 3 23 1343 1363 1341 1364 0.92 25 29 4.5 1.4e+03 2.1 1.6 2 23 1376 1397 1375 1397 0.89 26 29 2 6.4e+02 3.2 0.6 1 23 1409 1432 1409 1432 0.95 27 29 0.00028 0.087 15.4 0.1 2 23 1465 1486 1464 1486 0.97 28 29 0.00062 0.2 14.3 0.4 1 23 1492 1515 1492 1515 0.95 29 29 0.0063 2 11.1 0.5 1 21 1520 1540 1520 1541 0.95
Sequence Information
- Coding Sequence
- ATGTTCTCGAACAACAGAACATCGGCCGCCTGGCGGGTTTCGTGTTCCAAGATGGCGATCCGCCTCGGGTTCCCGTCCTGTGTGTCCACCATGACGGGCCGCGGGCGTTCGGATTATCACGAGCTCTGCCGCCTCTGCGCTTCCTACGACGCCAAcaaattggacattttcagCGACGGCGGTCGTCAGAGGAAACTCATCGACAAAATCACTTCCTGCCTGTCCTTCGAGGTTTCCAAAGATGATTTATACCCGAAAAGCCTGTGTTTCCGGTGCATCTACAACTTGGAAAACTTCTACGACTTCCGCCGAGGGTGTATCGACGCCAGGGCGAAGCTGGAGAAGGCCATCAAGCAGTTCAAGCATCTCAAGGATAACCGTCTTCCTGACCTCCCAGAAATTACAATTGAGCACAGAACTGtgaagaagAAGCCAGAACCTAAAAAGCCAAATTATTTGAAGCATGAATTGGTGAAACCTGAACTGGTGAAGCCTGAACTGGTTAAGCGTGAACTGGTGAAGCCTGAACTGGTGAAGCGTGAACTGGTGAAGCCTGAACCGGTGAAGCCTGAACTGGTGAAGCCAGAATTGGTGAAGCAGGAGTTCGTGAAGGCTGAATATGATGATGAAGACTCAGAACCTCCAAACCCAGCTGATTTCCTTGAAGCCTGCTTGGGTGATTCTCCACACAATCCAGTTGGTAACCAGCCGGGGAAACCAGCgttggaagaagaagaaggtccTTTCCCTTGCAAAACATGCGGTCGCCTCTTCAACTCCAAGAGTTCTCTCACCATTCACGCAAAGTTTCACCAAGACAAAACACGAGATGCAGATGGCAGTGAACCCTACTCCTGCTATGTTTGTGAGAAAGTATTTTCCAGCAAAGGGCATTTGGCGCTTCACTCACGCGTGCACATTGGTGAAACAGGCTCTCCTGCACCGCCACCCGTTCGTCCAGTACCTGCTCAAATAAAGCTATACAAGTGCGATCTCTGCAATAAGTCATACTCAATGGCCAAACATCTCTGGGGGCACGTCAGCACGTCACACAAAGGCGACCCTCTAGTTACCTGTGGGCTTTGTCTACGCACGTTTTCCTCCATCGCTAATCTCGACGATCACAAAAGGATTAAGCATAAAAACGAATCAGAACCCCAGGAGGATTCCAATCAAGAGCAGTTGCAGAAACAGAACGAGGACGTCCCACTGGACTTGAGTCAAGACCCCCAGCGGAACGAAGAGGACAAAAAACAAGAATATAACCCCAGGAAGATCCAGAGAGACAGCAGTGGGAGTTTTCATTCTGAAGGGAATTTGGAAATGGACATCGATGAAACTAATCCAAACGAATCGTTAGTGTATTCGTGTCTTCTCTGTGGCCTAAAATGTGATTCACCTCCGGTTCTGAGCGATCATTTGATAAACGAGCACAATTATTATGACCCGATAGATTTTGAATCCCTTCATAGGCAGTACGGTGATAGAGACCACCCGGAAAACATGATGGAGGCCGAAACTGTGTTCTGCTGTGAAATCTGCTACAGGGAATTCAACGACCGGGCGTCCCTTTGGCTCCACATGCTCTACTCGCATAGAGACGAGGCATCCAAGGCTTGTGGCATCTGTCTGAAGGTTTGCGCAGACAATGAAAGCCTCGGACAACATGTTGAGACTTGTCATCCCCGTGAGAAAACCGAGCAGAGGAGGTAtagctgccaagtttgcgcccgCCAGCATGACTCTAGGAAGAAACTTGTGACACACGCCCGAATCCATAAACTCCAAGATCCTGATGGAAACCTAGTTGATCCGGAAACCATCGTAGTTCTGAATAGTGACGTTTACAATGACAACCCTCCAACACAGGTTCCAAATAATGACGGCTTCCTATCAAGTTGCGATATTTGTTTCAAAGTGTTTGAAAGTGAAGCTAAACTGAGTAAACATAAAAGAAGTACTCATAAAGATGGGATGAACAACTCTACATCAAACAACTACCATTTCTTCTTTGCCTGCGAGCTTTGTGGACTGTCACATCTCTCCAGGTCGGAACGTTGGAAGCATATGGTTACCTCCCACAATGGCGATCCAGCTGTGACTTGTGAGATCAAGTCGTGCGCCAAGGTCTTCCCTACTAGTGCGGTTAAGAAAGAGCATGAATTGACGCATCACGCAGCTCAAGGCGAGTACCCCAATACCTGCGAAATTTGCGGCAAAATGTGGAAAACGCGGGTTGAATATTGGAAACATATGATGGGAGTCCACTCCGAGAGCCTGCCTTTCATTTGTGGCGTTTGTTTGAAAGTGTTCTGCGATTTGCAAGGCCTTGTCACTCATGTAAGGGAAAGGCACTGGCCATTGGTGGGAGGCGATTTTTGCTGTGATATTTGTGGCAGGCCGTACTCCAAGGTCTCAAAAATGTCCAGGCATAGGAAGATCCATTTCGCTGTTGACACTCCCCCAGAGTTGCAGGAGTTGTTGAATAATTCTAAACACGATAGCAGTGAGAATCAGCATTTTTTGCAGAACCATACAACAGCTTTGACGTGCGATCTCTGTTTGGGGCCTGATAACAAAGAAGAATTCGAAAATTTAGATGCGCTGGGGAAGCATAGGCATGAAACACACAACGTCATGCCTTGTGATTTGTGCCCGAAGTATTACGGAAGGACTTCTCATCTGTGGAAGCACGTTAATAAAATTCACAAGGGTCATCCTGACATCACTTGTCCTGTATGTGAAAGAACATCTGCATCGCGGGCACATCTGACAACGCACATGGCCAAACACCATAGGACTGCCGTAGGCGAAGTGGCAGTTTCAAAAATAGACGAAAACGGAGTGCATACTTGTGAGAAATgttcgaaaattttcagaaaggaATCTCTCGTTCGAAAACATTTGAAGCACTGCAGAGGACCTCGTCCTGCCAAAATCAATCTGCCCCCTCCAGTGAACGGGGTGTACACGTGTGAACGTTGTCCAAAAACATTTGTTGCTCAGAATTTGCTCAATAAACACATGCGCGGTTCACACGTCACATTCAAATGCGAGATTTGTGAGATCAAGTCCAACACCAAGACTGAACTTTTCAATCACATTGTGGCCAAACACGTGGACCACCCTGATGTCAAATGTGCCGTTACAGGGTGCGACAAGATTCTAAGGTGCAAAGCTGATTTGGACAGGCATCAGCGAGACCACAGAAGCAGCACGCAGTTGCACATCTGTAAATTCTGCGCTGAAATAGTTACTAGTAAAGTTAAATTGAAGATGCATCTGAAAGCTCAACATGGGAAAGAAGCGAGGCATCTTTGTGCTCTGTGTTTGAAGGCCGAGAAAAGTTTTGAAGATCTCAGGAGTCACATTGTTGAGCAACACATTGTCATCATTAGTCGCCCCAATGTTTGTCAGGTTTGTGCAAAACCATGTTCGAGTAGGTCGAAACTTATGGACCATGTACGGAATCACGGTCCAGAATTCCACCCTTGCAAAATTTGCTTGAAGATATTCCCAACTAAAGACGAGCTTGAACAGCATTGTGATAATCATCCGGTTAGTGATGATGACGAGAATGAAGATGGCATGGAAGAAGTGGACGAAGTGGACGAAGTTGATGAGCTGGATGCTAATAGTATCATTGACATCATTGGTGCACCTCAAGGGAACGTCAAAGAAGTCGAGTCTTTAGATGCTAAAAGCATTAGAGATATTATTGGTGCAGGGCAAGACAATGTCAAGTTGAACAGGGTGAGTGAGTCTGACAAGGAAGACGATGGGCCTCCTCTGAAAAAGAGGAAAGTAGTCATCAAGACTCCCAAAAACAGAAATGAAGGTCCTGAGTTCTTGCAGCAGCTGGGACTGATGCCCGACTCGGAGAAGAAGAAACCTCGCGAGGTACGGAGAGTGTTCGACGACGACTACACAACCAGCCCTTGCGAGCTCTGCGACAAAGTATGGCCAGCAAAGAGGCACCTCTGGCAGCATCTGATCCGTTTCCATAAGAACGAAGCTGGCCGATGCTGCGGCGTATGCTTGAAAGTGTGCTCCAATTACACCAGTTTGAGCGTCCACCTTGCCGTCCACCACAGGAAGAACTTCGACGGCGACGGTTCTAATTTGTCTTGTAAAGTTTGCGGTAAATACCATAACGGCAGGACGAAACTGATGAATCACTCGTTGATCCATTTCGGTCACGAGGAGCGAGCTAACGACATGGTACACCGGTGCCTCATTTGCCAATCCGTCTTCCCGTTGTTCCCATCTTTTGTAGAACATTTGCAGAAAGAACACAACCTGGCGACTGACATGAAGGAAGACTTTGAACCTGTCGATGAATCTGCTGAAGAGGTGAGCAAGCCGGTTATGACCTCCAAACCGCCGTTTTTGAGCTGTGAAATTTGCTCGTTGGTTTTCGCCAGTGAAGTCGGCCTGACGAACCACAGGCGCACGCACGAACACTCTGATAGTTTCAAATGCGGTCAATGCGGCGAGCTGTTTGCATCAGCCGATACTTTGAAGAACCATAAACAAGAGAAACACAAAGGCGACGAGTTCGTTTGTGCCGAGTGCAAATCCAGTTTCACATCCTACGAAATGCTGACCACTCATTATAAGATGTGCCGAGCCAAACTGAGCAAAACTTCGGACTCTGAGAGCGACGTTGATGACGACGAGAGCGATGAAATCGAAACGACCGAGCTGGCCGAGGAGTCGGAAACCGACGATAAGTCCGAGGTGAACGATGATGATTCGTCGTCTGTGtccgacgacgacgacgacgacgacgacgacgacgatgaCGACGAGGACGAAGAAGCTGACGTTGAGGAGGTCGAAGACGAAGACATCGATGAAACCGAAGATGAGGACGACGACGAGGACGATGACAACGCCCAATCGGAAGAGCTCAAAATCCGCGCCATCGAGGCCTACGTCTGCGACAACATGGAGGACAACATGGTTGAAGTTGTCAAAATCGATCTCTCAGACGACATAGACGGAGCTGTCAAAGCATCCTAA
- Protein Sequence
- MFSNNRTSAAWRVSCSKMAIRLGFPSCVSTMTGRGRSDYHELCRLCASYDANKLDIFSDGGRQRKLIDKITSCLSFEVSKDDLYPKSLCFRCIYNLENFYDFRRGCIDARAKLEKAIKQFKHLKDNRLPDLPEITIEHRTVKKKPEPKKPNYLKHELVKPELVKPELVKRELVKPELVKRELVKPEPVKPELVKPELVKQEFVKAEYDDEDSEPPNPADFLEACLGDSPHNPVGNQPGKPALEEEEGPFPCKTCGRLFNSKSSLTIHAKFHQDKTRDADGSEPYSCYVCEKVFSSKGHLALHSRVHIGETGSPAPPPVRPVPAQIKLYKCDLCNKSYSMAKHLWGHVSTSHKGDPLVTCGLCLRTFSSIANLDDHKRIKHKNESEPQEDSNQEQLQKQNEDVPLDLSQDPQRNEEDKKQEYNPRKIQRDSSGSFHSEGNLEMDIDETNPNESLVYSCLLCGLKCDSPPVLSDHLINEHNYYDPIDFESLHRQYGDRDHPENMMEAETVFCCEICYREFNDRASLWLHMLYSHRDEASKACGICLKVCADNESLGQHVETCHPREKTEQRRYSCQVCARQHDSRKKLVTHARIHKLQDPDGNLVDPETIVVLNSDVYNDNPPTQVPNNDGFLSSCDICFKVFESEAKLSKHKRSTHKDGMNNSTSNNYHFFFACELCGLSHLSRSERWKHMVTSHNGDPAVTCEIKSCAKVFPTSAVKKEHELTHHAAQGEYPNTCEICGKMWKTRVEYWKHMMGVHSESLPFICGVCLKVFCDLQGLVTHVRERHWPLVGGDFCCDICGRPYSKVSKMSRHRKIHFAVDTPPELQELLNNSKHDSSENQHFLQNHTTALTCDLCLGPDNKEEFENLDALGKHRHETHNVMPCDLCPKYYGRTSHLWKHVNKIHKGHPDITCPVCERTSASRAHLTTHMAKHHRTAVGEVAVSKIDENGVHTCEKCSKIFRKESLVRKHLKHCRGPRPAKINLPPPVNGVYTCERCPKTFVAQNLLNKHMRGSHVTFKCEICEIKSNTKTELFNHIVAKHVDHPDVKCAVTGCDKILRCKADLDRHQRDHRSSTQLHICKFCAEIVTSKVKLKMHLKAQHGKEARHLCALCLKAEKSFEDLRSHIVEQHIVIISRPNVCQVCAKPCSSRSKLMDHVRNHGPEFHPCKICLKIFPTKDELEQHCDNHPVSDDDENEDGMEEVDEVDEVDELDANSIIDIIGAPQGNVKEVESLDAKSIRDIIGAGQDNVKLNRVSESDKEDDGPPLKKRKVVIKTPKNRNEGPEFLQQLGLMPDSEKKKPREVRRVFDDDYTTSPCELCDKVWPAKRHLWQHLIRFHKNEAGRCCGVCLKVCSNYTSLSVHLAVHHRKNFDGDGSNLSCKVCGKYHNGRTKLMNHSLIHFGHEERANDMVHRCLICQSVFPLFPSFVEHLQKEHNLATDMKEDFEPVDESAEEVSKPVMTSKPPFLSCEICSLVFASEVGLTNHRRTHEHSDSFKCGQCGELFASADTLKNHKQEKHKGDEFVCAECKSSFTSYEMLTTHYKMCRAKLSKTSDSESDVDDDESDEIETTELAEESETDDKSEVNDDDSSSVSDDDDDDDDDDDDDEDEEADVEEVEDEDIDETEDEDDDEDDDNAQSEELKIRAIEAYVCDNMEDNMVEVVKIDLSDDIDGAVKAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00386615; iTF_00145849; iTF_01365785;
- 90% Identity
- -
- 80% Identity
- -