Scal035522.1
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- -
- Assembly
- GCA_963920205.1
- Location
- OY986061.1:15382359-15396565[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 3.6e-05 0.0061 18.2 0.7 1 23 179 201 179 201 0.96 2 27 2.7e-05 0.0045 18.6 1.2 1 23 214 236 214 236 0.98 3 27 0.00047 0.079 14.7 1.3 1 23 258 281 258 281 0.97 4 27 0.0031 0.51 12.1 0.2 2 23 288 310 287 310 0.96 5 27 0.82 1.4e+02 4.5 0.1 1 23 385 408 385 408 0.93 6 27 0.00085 0.14 13.9 1.3 1 23 439 462 439 462 0.95 7 27 0.33 55 5.7 0.8 3 23 470 491 469 491 0.95 8 27 5.5 9.1e+02 1.9 1.5 1 23 501 523 501 523 0.96 9 27 0.00034 0.056 15.1 1.0 2 23 563 585 562 585 0.96 10 27 0.0044 0.74 11.6 0.1 2 23 664 686 664 686 0.95 11 27 0.0072 1.2 11.0 0.4 1 23 692 715 692 715 0.95 12 27 0.0017 0.28 13.0 2.5 1 23 723 745 723 745 0.97 13 27 0.0038 0.64 11.8 1.1 2 23 811 833 810 833 0.95 14 27 0.00046 0.076 14.7 1.0 2 23 840 861 839 862 0.94 15 27 0.0089 1.5 10.7 3.2 1 21 880 900 880 901 0.95 16 27 6.9e-06 0.0012 20.5 0.8 1 23 920 943 920 943 0.98 17 27 0.28 47 6.0 0.2 1 23 946 969 946 969 0.91 18 27 0.83 1.4e+02 4.5 0.3 2 23 976 999 975 999 0.92 19 27 0.3 49 5.9 1.0 1 23 1006 1029 1006 1029 0.94 20 27 0.0017 0.28 12.9 1.4 2 23 1067 1088 1067 1088 0.97 21 27 0.015 2.5 9.9 1.9 1 19 1093 1111 1093 1115 0.92 22 27 0.28 47 6.0 0.3 2 23 1238 1260 1237 1260 0.94 23 27 6.3 1e+03 1.7 4.4 3 23 1268 1288 1266 1289 0.92 24 27 5.5 9.1e+02 1.9 1.5 1 23 1334 1357 1334 1357 0.95 25 27 0.0013 0.22 13.3 0.2 2 23 1392 1413 1391 1413 0.97 26 27 0.0029 0.49 12.2 0.1 1 23 1419 1442 1419 1442 0.94 27 27 0.017 2.8 9.8 0.2 1 20 1447 1466 1447 1468 0.93
Sequence Information
- Coding Sequence
- ATGACGGGACACGGAGGTGCGGATTATCACGAGCTCTGCCGCCTCTGCGCTTCCTACGACGCGAATAAATTGGACATTTTCAGCGACGGCGGCCGCGAGCGGAAACTCATCGACAAAATCACGTCCTGCTTGTCCTTTGAGgtTTCTAAAGATGATTTATACCCGAAAAGCCTGTGTTTCCGGTGTATCTACAACTTGGAGAACTTCTACGACTTCCGTCGAGGGTGTATCGACGCCAGGGCGAAGCTGGAGAAGGCCATCAAGCAGTTCAAGCATCTCAAGGATAATCGTCTTCCTGATCTCCCGGAAATCACTATCGAACATAGAACTGTGAAAAAGaaGCCAGAAGAAATTAAGCCGGAGTATGTGAAGCCTGAGTTGGTCAAGCCGGAATTAGTGAAGCAGGAATACGGAGATGAAGACGCTGAGCCGCCGAATCCAGCTGATTTCCTCGAAGCATGTTTGGGAGATTCCCCTCACACTCCGATAGCCAACCAATCAGGAAAACCAGCCGTGGAAGACGAAGAGGGTCCTTTCCCTTGCAAAATCTGTGGCCGCCTGTTTAACTCCAAGAGTTCTCTCACCATTCACGCAAAGTTTCATCAAGACAAAACACGAGATGCAGACGGGAGTGAACCCTACTCCTGCTACGTCTGTGAAAAAGTATTTTCCAGTAAAGGGCATCTGGCGCTGCACTCCCGCGTTCACATCGGAGAAACAGGCCCTCCGGCACCGCCTCCCGTTCGTCCGGTACCTGCTCAAATAAAGTTATACAGATGCGATCTCTGCAATAAGTCATACTCGATGGCCAAGCACCTCTGGGGACACGTCAGCACTTCACACAAAGGCGACCCTCTTGTAACCTGTGGGCTCTGCCTCCGGACGTTTTCCTCTATAGCTAATCTCGAGGATCACAAAAGAATCAAGCACAAAAATGAATCGGAACCTCAGGCAAATACAGATCGAGATGTGCTTCAGAAACAGAATGAGGACGTCCCTTTAGACCTGAGTCAAGACCCTCATCGACAAGATGAGGACAAAAAACAAGACTATAAGCCCAGGAAGATCCAGAGAGACAGCAGCGGGAGTTTTCATTCTGAAGGGAATTTGGAAATAGATGTGGACGCACCTAATCAAAACGAATCGTTGGTATATTCTTGCCTTCTGTGTGGGCTGAAATGCGATTCACCCCCCGTTCTGAGCGATCATTTGATAAACGAGCACAATTACTACGATCGTATAGATTTTGAATCCCTTCATAGACAGTATGGGGAAGGAGACAACCCTGAAAACATGATGGAGGCAGAAACCGTCTTCTGCTGTGAAATCTGCTACAGGGAATTCAACGACCGGGCAAGCCTTTGGCTTCATATGCTCTACTCGCACAGAGATGAGGCGTCCAAGGCGTGCGGCATCTGTTTGAAGGTTTGTGCGGACAACGAAACCCTCGGGCAACATGTTGACACATGCCATCCCCGTGAGAAAACCGAGCAGCGCAGGTACAGCTGTCAGGTCTGCGCTCGCCAGCATGACTCGAGGAAAAAACTCGTTACACACGCTCGAATCCACAAACTCCAAGATCCAGAAGGCAACCTCGTTGATCCAGAAACCATCGTTGTTTTGAATAGTGATGTTTACAACGATAACCCTCCACCGCAAATTCCGAACAATGACGGCTTCCTATCAAGTTGCGATATTTGTTTCAAAGTCTTTGAAAGTGAAGCTAAATTGAATAAGCACAAAAGAAGCACCCATAAAGACGGATTGAACAACTCTACATCAAACAACTACCACTTCTTCTTTGCATGTGAGCTGTGTGGGTTGTCACATCTCTCCAGGTCAGAACGGTGGAAACATATGGTTACCTCTCATAACGGCGATCCTGCTGTTACTTGTGAGGTCAAGTCTTGCGCCAAGGTCTTCCCCACCAGCGCCATAAAAAAAGAGCACGAATTGACGCATCATGTGACTCAAGGCGAGTACCCTAACACGTGCGAAATATGCGGCAAAATGTGGAAAACGCGGGTAGAATACTGGAAACACATGATGGGAGTCCACTCCGAGAGTTTACCTTTCATTTGTGGCGTATGCTTGAAAGTATTTTGTGATTTACAAGGCCTCGTTACTCATGTTAGGGAAAGGCATTGGCCTTTGGTAGGAGGCGATTTTTGCTGCGATATTTGCGGAAGGCCATACTCCAAGGTTTCAAAAATGTCCAGGCATAGGAAGATACATTTTGCGATCGATACGCCGCCTGAGTTGCAGGAGTTGTTGAATAACACAAAACTAGATAGCAGCGAGAATCAGCATTTTTTGCAAAATCATACCACAGCTTTGACGTGCGATCTCTGTTTGGGGCCTGATACCaaagaagaatttgaaaatatagACGCTCTTGGGAAGCATCGGCATGAAACCCACAACGTTATGCCTTGTGACTTATGCACAAAGTACTACGGGAGAACGTCCCATCTGTGGAAGCATGTTAATAAAATACACAAGGGGCATCCTGACATTACATGTCCTGTTTGTGAAAGAACATCTGCCTCGAGAGCGCATTTGGCAACGCACATGGCCAAACACCATAGAAGCGCAGAAGGGGAAGCGGCTTATTCGAAAATAGACGAAAACGGAGTACACACGTGTGAGAAATGTTCGAAAATTTTCCGAAAGGAATCCCTTGTTCGAAAACATCTAAAGCACTGCAAAGGACCTCGTCCAGCTAAAATCAATCTGCCTGCTCCACTGAACGGTGTGTACACGTGTGAACGCTGCCCCAAAACATTCGTTGCTCAGAATTTGCTCAATAAACACATGCGTAGTTCACATGTCACATTTAAATGTGAGATTTGTGAAATCAAAGAAAACACCAAGACTGACCTTTTCAATCACATTGTGGCCGAACATGTGGACCACCCTAATGTCAAATGTGCTGCTGCAGGATGCGATAAGATACTGAGGTGCAAAGCTGATTTGGACAGGCATCAGCGGGACCACCGAGGCAGCACGCAGCTGCACATCTGTAAATTCTGTGCAGAAATAGTTACCAGTAAAGTTAAATTGAAGATGCATTTGAAAGCTCAACACGGAAAAGAGTCGAGGCATCTTTGCGCTTTGTGTTTGAAAGCAGAAAAAAGTTTTGAAGATCTTAGGAGTCACATAGTCGAAAATCACGGTGTCATAATTTGTCGCCCTAATGTCTGTCAGGTGTGTGCTAAACCGTGCTCTAGTAGGTCGAAACTTATGGACCACATACGAAATCACGGTCCTGAATTCCACCCTTGTAAAATTTGCTTGAAGATATTCCCTACTAAAGGTGAGCTTGAACAGCATTGTGATAATCATCCAGTTAGTGATGATGAAGAGAATGAAGACGAAGATGTGGAAGAAGTTGATGAATTGGATGCTAGTAGTATCATTGACATCATTGGTGCGCCTCAAGGAAACGTGGAAACAGTTGACGCTCTGGACGCTGAAAGTATCAGAGATATTATTGGCGCTGGCCAAGACAATGTCAAGCTGAATAGGGTGAGTGAATCTGATAAGGAAGAAGATGGTCCTCCTGCCAAAAAAAGAAGAGTGAGTGTTAAGACGCCCAAAAACAAGAACGAAGGGTCTGAGTTTTTGCACCAACTGGGATTGATACCAGATTCAGAGAAGAAGAAGTCTCGAGAGATTCGAAGGGTGTTTGATGATGATTACACGACGAGCCCGTGCGAGCTTTGTGATAAAGTATGGCCAGCAAAGAGGCACCTTTGGCAACATTTGATCAGGTTCCATAAAAATGAAGCAGGAAGATGCTGTGGTGTTTGCTTGAAGTTGTGTTCCAACTACACAAGCCTGAGCGTCCACCTCGCTGTACACCACAGGAAGAACTTCGATGGTGATGGTTCCAATTTGTCTTGTAAAGTCTGCGGAAAATATCACAATGGCAGAACAAAACTACAGAACCACTCTTGTATTCACTTTGGTCATGAAGAGCGGGCTACCGACATGGTCCATCACTGCCTCATATGCCAATCCGTATTCCCTCTGTTCCCGTCTTTCATCGAGCATTTGCAGAAAGAACACAATCTGGCGACAGACGTGAAAGAAGATGCCGAATCTGTGAACAAACCAGCAGCACCTGATACGTTGAACAAACCTGAAAAGTCGTCCAAACCGCCGTTCCTGAGGTGTGAAATTTGCACACTAGTTTTTGCGAGCGAAATCGGTCTTACGAACCACAAGCGGTCGCACGAACATTCCGACAGTTTCAAATGCGGGCAGTGCGGGGAGTTGTTCGGGTCCGCCGACGCGTTGAAGGCCCACAAACTGGAGAAACACAAGGGCGACGAATTCGTTTGCGCAGAGTGCAAATCCAGTTTCACGTCCTACGAAATGCTGACGGCTCACAATAAGAGCTGTAGAGCGAAACTAAGCAAAACTTCCGACTCTGAGAGCGAAGTCGAAGACGAAGAAAGCGATGAAATCGAGACGACGGGTTTGGCCGATGAGACGGAATCCGATGAAAAGTCCGACGTGAATGATGATTCGTCGTCCATATCAGATGAAGATGACGAAGAAGATGAGGATGAGGACAATGAGGAAGtcgaagaagacgaagaagatgaagatgtAGATGAAGATTTAGATGAAGAAGTtgaagaatccgatgatgaggATGATGACAACGCCCAAGCTGAAGACCTCAAAGAGATTCGCGCTATCGAGGCCTACGTCTGTGACAACATGGAGGACAATATGGTTGAGGTTGTCAAAATCGATCTCTCAGACGACATCGACGGTGCTGTCAAAGCATCCTAA
- Protein Sequence
- MTGHGGADYHELCRLCASYDANKLDIFSDGGRERKLIDKITSCLSFEVSKDDLYPKSLCFRCIYNLENFYDFRRGCIDARAKLEKAIKQFKHLKDNRLPDLPEITIEHRTVKKKPEEIKPEYVKPELVKPELVKQEYGDEDAEPPNPADFLEACLGDSPHTPIANQSGKPAVEDEEGPFPCKICGRLFNSKSSLTIHAKFHQDKTRDADGSEPYSCYVCEKVFSSKGHLALHSRVHIGETGPPAPPPVRPVPAQIKLYRCDLCNKSYSMAKHLWGHVSTSHKGDPLVTCGLCLRTFSSIANLEDHKRIKHKNESEPQANTDRDVLQKQNEDVPLDLSQDPHRQDEDKKQDYKPRKIQRDSSGSFHSEGNLEIDVDAPNQNESLVYSCLLCGLKCDSPPVLSDHLINEHNYYDRIDFESLHRQYGEGDNPENMMEAETVFCCEICYREFNDRASLWLHMLYSHRDEASKACGICLKVCADNETLGQHVDTCHPREKTEQRRYSCQVCARQHDSRKKLVTHARIHKLQDPEGNLVDPETIVVLNSDVYNDNPPPQIPNNDGFLSSCDICFKVFESEAKLNKHKRSTHKDGLNNSTSNNYHFFFACELCGLSHLSRSERWKHMVTSHNGDPAVTCEVKSCAKVFPTSAIKKEHELTHHVTQGEYPNTCEICGKMWKTRVEYWKHMMGVHSESLPFICGVCLKVFCDLQGLVTHVRERHWPLVGGDFCCDICGRPYSKVSKMSRHRKIHFAIDTPPELQELLNNTKLDSSENQHFLQNHTTALTCDLCLGPDTKEEFENIDALGKHRHETHNVMPCDLCTKYYGRTSHLWKHVNKIHKGHPDITCPVCERTSASRAHLATHMAKHHRSAEGEAAYSKIDENGVHTCEKCSKIFRKESLVRKHLKHCKGPRPAKINLPAPLNGVYTCERCPKTFVAQNLLNKHMRSSHVTFKCEICEIKENTKTDLFNHIVAEHVDHPNVKCAAAGCDKILRCKADLDRHQRDHRGSTQLHICKFCAEIVTSKVKLKMHLKAQHGKESRHLCALCLKAEKSFEDLRSHIVENHGVIICRPNVCQVCAKPCSSRSKLMDHIRNHGPEFHPCKICLKIFPTKGELEQHCDNHPVSDDEENEDEDVEEVDELDASSIIDIIGAPQGNVETVDALDAESIRDIIGAGQDNVKLNRVSESDKEEDGPPAKKRRVSVKTPKNKNEGSEFLHQLGLIPDSEKKKSREIRRVFDDDYTTSPCELCDKVWPAKRHLWQHLIRFHKNEAGRCCGVCLKLCSNYTSLSVHLAVHHRKNFDGDGSNLSCKVCGKYHNGRTKLQNHSCIHFGHEERATDMVHHCLICQSVFPLFPSFIEHLQKEHNLATDVKEDAESVNKPAAPDTLNKPEKSSKPPFLRCEICTLVFASEIGLTNHKRSHEHSDSFKCGQCGELFGSADALKAHKLEKHKGDEFVCAECKSSFTSYEMLTAHNKSCRAKLSKTSDSESEVEDEESDEIETTGLADETESDEKSDVNDDSSSISDEDDEEDEDEDNEEVEEDEEDEDVDEDLDEEVEESDDEDDDNAQAEDLKEIRAIEAYVCDNMEDNMVEVVKIDLSDDIDGAVKAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00884493;
- 90% Identity
- -
- 80% Identity
- -