Lbou002373.1
Basic Information
- Insect
- Leptopilina boulardi
- Gene Symbol
- RREB1
- Assembly
- GCA_011634795.1
- Location
- PHTE01000178.1:61521-67623[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.9e-05 0.0031 18.3 0.3 1 23 79 101 79 101 0.98 2 13 0.0056 0.6 11.1 2.4 1 23 214 237 214 238 0.92 3 13 3.3 3.5e+02 2.4 0.5 1 19 320 338 320 340 0.90 4 13 0.0041 0.44 11.5 0.1 1 23 454 476 454 476 0.96 5 13 7.2e-06 0.00077 20.2 1.6 1 23 485 507 485 507 0.98 6 13 0.0067 0.72 10.8 2.6 1 23 513 536 513 536 0.97 7 13 0.00051 0.055 14.4 1.9 1 23 885 908 885 908 0.97 8 13 0.0015 0.16 12.9 0.8 3 23 1137 1157 1135 1157 0.97 9 13 0.42 45 5.2 4.8 1 23 1163 1186 1163 1186 0.97 10 13 0.0064 0.69 10.9 1.5 1 23 1227 1251 1227 1251 0.97 11 13 3.6 3.9e+02 2.2 3.4 1 23 1329 1353 1329 1354 0.95 12 13 0.073 7.8 7.6 0.2 2 23 1400 1421 1399 1421 0.94 13 13 0.0032 0.35 11.8 4.1 3 23 1429 1449 1427 1449 0.98
Sequence Information
- Coding Sequence
- ATGAATCCGCTCTCGTTCCTCCGTGCGTCCAACTCACATTCAATTGCATCATTTCACGTGAATCCAAAAATTGGACAGTATCCAAAAAATTACAGTGCAACCAACATTGTACCAGAATTATTGaTTGGTCAATCAAAATCTTATCCAAGTTCATCATATCGAGATTTATCGACACATCATCATTTGGAAAATCATAATTCTCCGGAAAGTATTGACAGTGCCATTGAAGAAGAATATACATGTAAAATATGTTACAAAGTATTAAGATCAGCAAATTCGTTGGAGCGTCATATACTTGTGCATTCTGATGATTTATCCTTTAAATGTAATCCTTACAATATGGCATTCACCAGTACTAACGGAACAATGAATAGACATTCAAAAATTGCTCACAATCGTCTCTCATCATCTCACAGTTGTTCTGATTCAGAGGGTAGCAATGATTCTGAATCATCAccatcgaaaaaaattgaggaatacaataataatgaaatagcaaaaagaaattcaccATCCGATCTTATTGATGATGAAAATGAATcacttaatttattaaaaagaaaatcactcGACTATAGCGAGGATTTAACAccgcagaaaaaatttaaaaataatttatcatcagAAACACAACATAATTACACGTGTCCAATTTGTGGTAAACATGATTTTGCCACAAGTTCACTTCTTGAGATACATCTTGAGCATCATCATTTGGAAATTGATAAATGTGACTCTGATTTACCATACAAATGTCACAGGGTTTTGAATCTTCATCGTTCggtgaataatattaatgaaaattcctatAGAAATGCAACGAGAAATTTACGACATTCAGTGGAGGGTTTTGGTGATTTGACATTTGTCGATTTCACATCAACAAAATATCCCATGATTGCACGCGCAAAATGTGAAGAATTTCTTCATAGACCAGCGTCTGGTGAAATGGCCAAATTTCAATGTGCAAAATGCCTACGCGCCTTTCCCTGTAAGTCAGCTTTGGATTCCCACGAGATGGATTGTGGAATTCCAAATGTTCACTGGAAGGGAAACGATGCCCAATCGAGAAGGGATGATTTCTTCGCGggattaaatttacaaaataaagcTGCCATGACAGAAGCAAAAGATGGAAAAGATTTGGCTGATATTCAAAGTATCATCAGCATCACATCGAGTCCAATTCTTCACAGTTTCTCAAGATCGGATGCAAGCACTCCAGACAATTGTAGcaacaaaattaatcaaaatgttGGATCGTCTGGATCATCAGGAACAGTTTCATCAGAATGTAACGAAGAGGAAACACAAGATGCGTTCGCTgctgaatttagaaaaatgaaactaaaagGCGAATTTCCCTGTAAACTTTGCGACGCtgtatttccaaatttaaggGCTCTCAAGGGACACAATCGAGCTCACATGGGAGTTCCACCTGGAATGCCCTATCCatgtaatatttgtaattacacCAGCACTGATAAAACAACACTAACGAGGCATTTGAAGACGCACAATGGCGACAGACCCTTTGAATGTGCACAGTGTACTTACGCCTTTACCACTAAGGCAAATTGTGAACGACACGTTCGAAATCGTCATGGAATTCACGATAAAAATGAAgttcaaaaaacaataatttatcatcCAACAGAAGATTTGACAAACGACAGTCTCGATAGAAGCATGTCAAGAAGTGTCAAGGATGAAGTGAGAAAAACTCTCGTCTTTcccaaagaagaaaattatcattcCTATAATATGATGCAAATGCATCAggagataaatataaaagaggaaaaaatggTCGAATTACCAAATCCAATAAATCAACTAAATCCAATGCAAAATCACTACGAACAAGAAGTATTTCCCCGTCCAAGATCTGTGCAACCATTGGAATTGACATACAGAAGTTCACCGCAGCATCCAATCAAGACGGAGTCAAAAGAGGAAGATCTCGAATCGAGATCATCGGAGGGCAGCGTATCTCTAGTCAATGAAACCAAACCGGACATACACCAAAGAATTCAAGCTAGTCCGATgaacttgaaaaaaacaagTGATTCCTCAAGTGACGACGGTCCCTTGGATCTCTCAATGGATGTTCTCGATCTTAGCAAAAAATCCAAAGACAAGGAAATTGATAACGAAGAACAGaaagaattttacaattcaCCAAATCCACTTCTTCTAACGCAAGCTCTTTTAAAGGCACGTCAAGTAAATTCCCCTCCAACGTCATTGGAAGCACTTTACGCCAACGCTCACGCAAATATGATTTACAACAATTTGGCCCTTTCATCTGGTACCGGATTGATATCACCCTATTTTTTGAACTCAATTTTCGAGCAAGGTTACGCAATGAAGGAACGATTACAAAAAGAACTTGCACGTGGTCTACAAACAAGTGGCGGATCCCTAGTTGAACAGCAACCAACACCAGTTCCTGAAAATCCAGTATTCAGTAACTATCCACCAAGAGGAAGAACTCCACAACCACCGCGCGATGAACAAATTTACACCAACGTTCAAGTATCCCCTCGCGAAAGAATTAGCGAATCATCAAATTCAGTGAAAATGGTCATAAAAAATGGTGTTCTTATGCGTAAACAAAAACAACGACGCTACAGAACCGAAAGACCATTCACTTGTGAATATTGCTCGGCTAAATTCACTCTCAAGACAAATATGGAACGACACATTAAACAACAACACAACGAACTATGGCATCGAAGACCCCGGGGTGGTCATTCAACTCGAGGACGACCTCCAGCGAGACCTCCAACATTGTTACAAAATATTGGACCCTCTCAATCATTCATAAGAGCCAAATCATCCTACGAAGCACCAAAAGAAGACGACTATGGAAGACATCCAATTTCCGATCAAGTGAAATACGCAATTTTGGCTCAACAACTCAAGGGAATTAAAACCGAAGAAGCTCAAGACTCCGACGAAGAATTAGTTATTGACGAAGAAGCCTGTGGAGAAAAATCCATCAGCCTCCTTAggggaaaattggaaaattccgAATCCAAAGAACCTGAACCTGAAGATGaagacgaagaagaagaaccTCACCATATGgaggaaatagaaaattttaaaatagaacaagaatcaattgaaataaccgaaacaataataaaaaccgAGGAGGAGGCTGCTGATCTTGCCAGTGTTCCAAAATTGATACAAACAGCATCGCAAAACTATCCTCAATTTAAATCCCAATATTTAAGCGACGAAGATGGAATACCTCATTCAAATAGCGAAAATTCAGGCAATTCAGTCAGCACTGatgaaaaatcagaaaattcctcaacatttattaaaaaaaagaaaaaaaagaagaaaatgaaagcATCGGCCTATTCAATGGCGCCAAATCGAGTAATCTGTAAATATTGCCATCGTGAATTCCCCTGGATTTCATCCCTTCGACGACATATTCTCACACACACTGGTGTTAAACCCTACAGATGTGATTATTGCATGTTggattttacaacaaaatcaAATTGTGATCGTCATTTGAATCGTAAGCACAAGAGTCTATTACAACGTTCAAATGCACGTAATATTCGTAATTCCTCATCGCCCGATAATCAAGATTCAAGAGTCACGAATAACAATAGCTTCTCAACGAGAAACGTTCCTGAACGACCCTACAAATGTAATCAATGTCCAAGTTCAACATTCGCGACATTGggcaatttaaagaaacacaGATCAACGAAACATTCACGAACAATGAATTCCCGTTCAGAGACGTCTTCCAGCGATCATCAACACTCGGATCATAATCAAAAGCAAAATGATCAAAGCGGCGATGATGGCGGTTCGTCGAGTTCGGAAAATGTCGAAAATCCAACAATGGAATTAAATCAAAAGAATACAATTATTCCCTCTTCCAATGAAAATCGATCGTGTCGTACTTCACCGACTTCATCGCCAGGACCAACTGACACACCATTCAAATGTCATATTCCAAATTGTGACAACGGCTTTGCTGAACGTCAGGATTGTCTCGATCACATAAGAATGCATCATGAACGAGAATACGAGATTTTAGTATCGAAAGGCGCTTTACAAATGGGAATCACTTCCGCCGAGGAGCAACAACCTCCGGTTAATCAACACTCGAGCGATGGTCCCCGATCCCTTGACTACAAAGACAGAaagGTTGTCTGCGCCTTTTGCATGAGACGATTCTGGTCGGCTGAAGATCTTCGACGTCACGTGAGAACTCACACTGGCGAGAAACCCTTTTGGTGTGATATTTGCGATAGACGATTCACTCTCAAGCACAGTATGCTACGTCATCGAAAGAAGCACGAGTCAGTTGATTCAACAATGTACATTGGCAGTGGTGATGAGGAAATTTTACCCAATCAACCACCAACAATTACGCCAAGAAGTCAACAACAATCGCCAGCTTCAATTCATGCAGCAACAACGGGCAATTCAATGATTGCTGAAAGAATGTCATCATTACCAACTGTTGCAACTATTGCAACTGGCGATGCTGCTCCAAGTAGTTTAACAAGGTTTAATCCTTACGAAAAACTAGCCACACTCACcagtaaattatcaaatttccaGAGCAATCATGATCTAACGGAAACAGGTAATGATCTGATCTCCAATTTACTAGGAATCAAAGATCCTggtattattgataaaatgcTTCTTGCTACTCCTGATGATGCTGCAAAATTATTAGGAGTCAAGGGGgaataa
- Protein Sequence
- MNPLSFLRASNSHSIASFHVNPKIGQYPKNYSATNIVPELLIGQSKSYPSSSYRDLSTHHHLENHNSPESIDSAIEEEYTCKICYKVLRSANSLERHILVHSDDLSFKCNPYNMAFTSTNGTMNRHSKIAHNRLSSSHSCSDSEGSNDSESSPSKKIEEYNNNEIAKRNSPSDLIDDENESLNLLKRKSLDYSEDLTPQKKFKNNLSSETQHNYTCPICGKHDFATSSLLEIHLEHHHLEIDKCDSDLPYKCHRVLNLHRSVNNINENSYRNATRNLRHSVEGFGDLTFVDFTSTKYPMIARAKCEEFLHRPASGEMAKFQCAKCLRAFPCKSALDSHEMDCGIPNVHWKGNDAQSRRDDFFAGLNLQNKAAMTEAKDGKDLADIQSIISITSSPILHSFSRSDASTPDNCSNKINQNVGSSGSSGTVSSECNEEETQDAFAAEFRKMKLKGEFPCKLCDAVFPNLRALKGHNRAHMGVPPGMPYPCNICNYTSTDKTTLTRHLKTHNGDRPFECAQCTYAFTTKANCERHVRNRHGIHDKNEVQKTIIYHPTEDLTNDSLDRSMSRSVKDEVRKTLVFPKEENYHSYNMMQMHQEINIKEEKMVELPNPINQLNPMQNHYEQEVFPRPRSVQPLELTYRSSPQHPIKTESKEEDLESRSSEGSVSLVNETKPDIHQRIQASPMNLKKTSDSSSDDGPLDLSMDVLDLSKKSKDKEIDNEEQKEFYNSPNPLLLTQALLKARQVNSPPTSLEALYANAHANMIYNNLALSSGTGLISPYFLNSIFEQGYAMKERLQKELARGLQTSGGSLVEQQPTPVPENPVFSNYPPRGRTPQPPRDEQIYTNVQVSPRERISESSNSVKMVIKNGVLMRKQKQRRYRTERPFTCEYCSAKFTLKTNMERHIKQQHNELWHRRPRGGHSTRGRPPARPPTLLQNIGPSQSFIRAKSSYEAPKEDDYGRHPISDQVKYAILAQQLKGIKTEEAQDSDEELVIDEEACGEKSISLLRGKLENSESKEPEPEDEDEEEEPHHMEEIENFKIEQESIEITETIIKTEEEAADLASVPKLIQTASQNYPQFKSQYLSDEDGIPHSNSENSGNSVSTDEKSENSSTFIKKKKKKKKMKASAYSMAPNRVICKYCHREFPWISSLRRHILTHTGVKPYRCDYCMLDFTTKSNCDRHLNRKHKSLLQRSNARNIRNSSSPDNQDSRVTNNNSFSTRNVPERPYKCNQCPSSTFATLGNLKKHRSTKHSRTMNSRSETSSSDHQHSDHNQKQNDQSGDDGGSSSSENVENPTMELNQKNTIIPSSNENRSCRTSPTSSPGPTDTPFKCHIPNCDNGFAERQDCLDHIRMHHEREYEILVSKGALQMGITSAEEQQPPVNQHSSDGPRSLDYKDRKVVCAFCMRRFWSAEDLRRHVRTHTGEKPFWCDICDRRFTLKHSMLRHRKKHESVDSTMYIGSGDEEILPNQPPTITPRSQQQSPASIHAATTGNSMIAERMSSLPTVATIATGDAAPSSLTRFNPYEKLATLTSKLSNFQSNHDLTETGNDLISNLLGIKDPGIIDKMLLATPDDAAKLLGVKGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00881528; iTF_00882444; iTF_00880731;
- 90% Identity
- -
- 80% Identity
- -