Basic Information

Gene Symbol
Hr39
Assembly
GCA_011634795.1
Location
PHTE01000345.1:139829-161606[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 3.8 2.3e+04 -5.2 9.5 52 167 183 293 145 337 0.58
2 4 4 2.4e+04 -7.0 7.9 69 148 308 381 262 412 0.39
3 4 6.9e-08 0.00041 20.3 0.0 1 21 492 512 492 517 0.92
4 4 1.9e-72 1.2e-68 232.9 0.0 86 408 547 863 521 863 0.88

Sequence Information

Coding Sequence
ATGTCAGAGCAAAATGGGCCCACAGAGGGCCCGGGTTGGTGGCCCCCGGCGCAATCATGGAAGTTACAATCGTCAATGCCATCCCGTACCTCGGAGGCTGGGAAGAACGTCTCCGTCACGACCATTAACGTGCTACCGGCTCACGAGATGCACGATGGTAAAAGTGTATGCAAGTATCTGGGTGGACAGAATGGCGTGACGGTATCAGTAGTATCGAGCTGTGGATCCGGTGTCATTGATTCCGGCACCAGCATCGGGTCCACAGAATCAACAAACGTTAACGACGTAGAGGATAGTGATGGGGAAGTGAGTAAAATCGACTTCCGCGGGGTTAATTtgcgcacaaaaaaaaagcacGACAACGAAAGCTGTAATGATAATTTACAGCAACAACCAGAAAGGCCCATGTCCTGGGAGGGTGAACTATCAGATCAAGAAATGTCTTCCAACACCATTACAAATCaaGACCTTGAAGAAACATCTATGGAAGGAGTTCAAGTTTGTAGTGCAAGTCCTGGACcacaagaacaaaaatttccaataaaaccGGAGCCGGATTTCCGGTCTAGTCCGGGACTAACACATGGTTTAAATGACACTATTCTGCCTTTATCACACGCTCAACAAGTTCAACAACATCAACGTTTGGAAAGCTTGGAGCAGACACAACAAAATGATTTACCTTTACTTGTTGGAAAGCTCCTTGGAGGTTATAACAGCTCGACTCCTAATCACAGCCCTGTACTCAATCCAAGGCATCATCTCACTAAACACAGTCACACCAGATCACAGgTTCCATCACCCGATTCCGCGATTCATTCAGCGTACAGTGTATTTAGTTCGCCAACACAAAGTCCACATGCAGCAAGACATTCGGCATTGGGTCCAGGGAGTCCAGTACCATCGTCATCATTATCTCTGTCACGTCacagttttaataattcaacatCATCACTATCTTTGTCACTTTCACATTCACTGTCGCGAAACAATTCGGATGCATCTAGCAGTTGTTACAGTTATGGATCACTAAGTCCTCCGACACATTCACCAGTTCAACAACCGAGACATGCACATCCACAACATCATCATCAAGTCGCTCAAGGTAGTCCTTTACATCTACCGGCATCATCCACTGGAAGTCATCATTATTCAGCACCAGGTTCCGAGATCTCTTCCGAGGGTCATCCTGACGATCAAGACGATTGTAGAATACCCTCGGCACCCACTGGTATTTCAACAAGACAACAATTAATCAATAGTCCCTGTCCAATATGCGGTGACAAAATTAGTGGTTTTCACTATGGTATTTTTTCCTGTGAATCGTGCAAAGGCTTTTTCAAGAGAACAGTAcaaaatcgtaaaaattacGTATGCCTAAGAGGAGTCGGTTGTCCAGTGACAGTtgcaacaagaaaaaaatgtccagCTTGCCGCTTTGACAAGTGTCTCAATATGGGAATGAAACTCGAAGCAATAAGGGAAGATAGAACAAGAGGTGGTCGAAGTACCTATCAGTGTACATATACACTGCCAGCGAATCTCATTGGTAGTCCTGCCGGCGGGATGTCTGGTGATAAAATGACAGGTGGATCTTGTAGTCCTGCACCACCAGGTTCAGAGCATCATCATCAAATGAGACATCATTCGAATCATTCACATAAAATGCAAGCAGTGCCACAATTATTACAAGATATCATGGATGTTGAACATTTGTGGCATTATAATGACAATGACAGAGTTGGCGGAAGTCAAAATAGTACATCAGGTGGGAATGGTAGCGGAAGTTGTGGAAGCGGTGATTCACTAGTGGGTGgtggaggaggaggaggaacTGCAAATGGAGCAACTGGTACAAATGGAAATATCAATAGTGGTGAATCTGCGAGGCCTAGTTCCACTGGATCGTTACCGGCAAATAATCACGATCATCAACATTCATCAACAAATGTTAATGCAACAATTACACCCAATCCTAATGGTAATCCAACACAGCATCCCGACTTTTTGTCAAACTTGTGCAATATCGCTGATCATAGACTGTACAAAATTGTCAAATGGTGTAAAAGCCtgcctttatttaaaaatatctcaaTTGATGATCAAATTTGTTTACTCATCAATTCATGGTGTGAATTGTTGTTGTTTTCATGCTGTTTTCGAAGTATGAGTACACCCGGAGAAATACGTGTGTCATTAGGAAAGTCTATTACTTTAGAGCAAGCGAGACAACTTGGTTTAGCGACATGCATCGAGAGGATGCTTACTTTTACAAATAATCTCAGGCGCCTCAGGGTGGATCAATACGAATATGTTGCAATGAAggTGATAGTACTATTGACATCGGATACAAGTGAATTAAAAGAACCTGAGAAGGTGAGAGCTTCTCAGGAAAAAGCACTTCAAGCACTACAGCAATATACAATCGCCAGGTATCCAGAAATGCCAGCAAAATTTGGCGAATTGCTTCTCAGGATTCCTGATTTACAAAGAACGTGCCAAGCAGGAAAGGAATTGTTAAGCGCTAAACGTGCCGAGGGTGAAGGTTGTTCGTTTAATCTTCTAATGGAATTATTACGTGGGGACCACTGA
Protein Sequence
MSEQNGPTEGPGWWPPAQSWKLQSSMPSRTSEAGKNVSVTTINVLPAHEMHDGKSVCKYLGGQNGVTVSVVSSCGSGVIDSGTSIGSTESTNVNDVEDSDGEVSKIDFRGVNLRTKKKHDNESCNDNLQQQPERPMSWEGELSDQEMSSNTITNQDLEETSMEGVQVCSASPGPQEQKFPIKPEPDFRSSPGLTHGLNDTILPLSHAQQVQQHQRLESLEQTQQNDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGPGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHAHPQHHHQVAQGSPLHLPASSTGSHHYSAPGSEISSEGHPDDQDDCRIPSAPTGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGVGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLIGSPAGGMSGDKMTGGSCSPAPPGSEHHHQMRHHSNHSHKMQAVPQLLQDIMDVEHLWHYNDNDRVGGSQNSTSGGNGSGSCGSGDSLVGGGGGGGTANGATGTNGNINSGESARPSSTGSLPANNHDHQHSSTNVNATITPNPNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLTFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGCSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00059522;
90% Identity
iTF_00881284;
80% Identity
iTF_00879658;