Lcyl013411.1
Basic Information
- Insect
- Leptogaster cylindrica
- Gene Symbol
- -
- Assembly
- GCA_963082835.1
- Location
- OY720107.1:4731975-4734003[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.6e-05 0.16 12.8 0.0 25 48 245 267 226 271 0.83 2 4 0.0003 1.8 9.5 0.4 19 52 402 435 398 439 0.85 3 4 0.068 4e+02 1.9 0.1 21 43 460 482 454 487 0.81 4 4 0.012 69 4.4 0.1 21 45 488 512 482 517 0.87
Sequence Information
- Coding Sequence
- ATGGGTATTGCCACAATTGAACTGTACTTGTTAATGCTGTTTCCCATTGCAGATGGCGCAGCTTTGCCATCTGCCGCTGAATCACTGAAAAATACCTGCCGTGTATGTTTAACGGAACAGGATAtcctaattaatatttttgatgaagCTAAAGATTTCCAGACGAAAATAAGTGACTTGCTGGAGTGTTGTGGTGATTTGAAAgtagattcGTGCGATAACTACCCAAAGATCATTTGTGGAGATTGTACACATGAACTTTTAGCAGCAGCTCGATTTAGGGAAAAATGCAAGAAGACGAGTGCCATTCTGTCCCAATTTATTACTACTGAATGTACACTTGAAGATGGTGACTTAATCGAGGAACCACAAAAGGACGATAGCGGTCACGGCGAGGAGGAAGATGAAAGATATCATGACGGTGATAACTGTATAGTAATGGACTTTGTTGAAGACGCAGATGAGATCAAATTAGAAGAAGAGGATGTTCTCATATGTTCCGATTCGTTTGAACAAATCGAATTTCTAGATCAGAATGAAGTTGTTGATCCAGGGGAGGATATAATAGAATTTGACGATGGTCCAGAGGCCCTTGATGGTAACACGTCAAATGTAAAGTTGACAAGCGAGGAACCTTCGAAACATAAGTCAAGGATTTGGGGTGAATCAATTACCACATCAAAGGGAACgtcaaagaaaaaatcaaatctgGGCAAGCCTCTTGTAATCAACTGTAATTGCGATATTTGTGGAGCAGGATTCACACATTCGTCCAATTTGCGGCGTCACCTCATTCGGCACGATCCTAAGGATATTTACTCATGCTCAATATGTGACTATCCGTTCACGATTTTAGAGAAAATGGTGGAACATCAGGAGGAGCACGACAAGGATGACTCAGTTCCGGAGAGCAACTCCACGACAAATAGACTGGAAGAAGACGTAGAATTGCCAACAGAAAATCTCGTCAGTATGAATAAATCATCGACCCAAGAGGAATTCAACCCACGCGCCAGAGATTTCAATGATTCGAAGGCGACTGTAAAACGAAATCACAAGTGTTCCGACTGCAATAAGGGATTCGTCTCGAAGTCAGCCCTCAGTGCTCACATGCGAATACATACAGGCGACAGACCCTATCGGTGTGAAGAGTGCGGCAAAGCATTCACCACACAGGGAGGACTCGTTCTACACACCCGCAGgCACACAGGACATCGTCCTTTTACGTGCAACATTTGTCAGAAGAGTTTTGTGGAGAGCAGCAATCTCAAGGTTCATATGCGTATCCATACCGGGGAGAAGCCGCACAAATGCACTATGTGTGGCCGCAGTTTTGCTCGGGTATTCCTCCTGGAGATCCATCAAAGGACACACACCGGAGAGCGACCTTATCAGTGTCCCTACTGTGATAAAGCCTTTGCCCAACAAGGGGACCTTTCTTCACATAAGCGAATTCACACTGGAGAACGACCCCATAAGTGTCCGTTTTGTCCAAAAGGATTTATTAAGAGTAGTGCCTtaaatcaacatttaaaaaagcaCTGGAAGTGGGCTGAACGCCTTCAAATGGAAGAACTTTCTGATAAAGTCCTGTATCCTGAAAAATCGCAGGACAACTTGcgaaatattgatattttactGATGGATTCTGGAGAAACAATACTATCTGGAGATTACGAATTAAGAGAATAA
- Protein Sequence
- MGIATIELYLLMLFPIADGAALPSAAESLKNTCRVCLTEQDILINIFDEAKDFQTKISDLLECCGDLKVDSCDNYPKIICGDCTHELLAAARFREKCKKTSAILSQFITTECTLEDGDLIEEPQKDDSGHGEEEDERYHDGDNCIVMDFVEDADEIKLEEEDVLICSDSFEQIEFLDQNEVVDPGEDIIEFDDGPEALDGNTSNVKLTSEEPSKHKSRIWGESITTSKGTSKKKSNLGKPLVINCNCDICGAGFTHSSNLRRHLIRHDPKDIYSCSICDYPFTILEKMVEHQEEHDKDDSVPESNSTTNRLEEDVELPTENLVSMNKSSTQEEFNPRARDFNDSKATVKRNHKCSDCNKGFVSKSALSAHMRIHTGDRPYRCEECGKAFTTQGGLVLHTRRHTGHRPFTCNICQKSFVESSNLKVHMRIHTGEKPHKCTMCGRSFARVFLLEIHQRTHTGERPYQCPYCDKAFAQQGDLSSHKRIHTGERPHKCPFCPKGFIKSSALNQHLKKHWKWAERLQMEELSDKVLYPEKSQDNLRNIDILLMDSGETILSGDYELRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00877538; iTF_00877317; iTF_00877312;
- 90% Identity
- iTF_00877538; iTF_00877317; iTF_00877312;
- 80% Identity
- iTF_00877312;