Lcyl013408.1
Basic Information
- Insect
- Leptogaster cylindrica
- Gene Symbol
- -
- Assembly
- GCA_963082835.1
- Location
- OY720107.1:4723865-4725731[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.5e-05 0.15 12.9 0.0 25 48 222 244 203 248 0.83 2 4 0.00027 1.6 9.6 0.3 19 52 379 412 375 417 0.86 3 4 0.065 3.8e+02 2.0 0.2 21 43 437 459 431 464 0.81 4 4 0.011 66 4.4 0.1 21 45 465 489 459 494 0.87
Sequence Information
- Coding Sequence
- atgcaaaAGAATATCACAGAAAATACCTGCCGTGTATGTTTAACGGAACAGGATAtcctaattaatatttttgatgaagCTAAAGATTTCCAGACGAAAATAAGTGACTTGCTGGAGTGTTGTGGTGATTTGAAAgtagattcGTGCGATAACTACCCAAAGATCATTTGTGGAGATTGTACACATGAACTTTTAGCAGCAGCTCGATTTAGGGAAAAATGCAAGAAGACGAGTGCCATTCTGTCCCAATTTATTACTACTGAATGTACACTTGAAGATGGTGACTTAATCGAGGAACCACAAAAGGACGATAGCGGTCACGGCGAGGAGGAAGATGAAAGATATCATGACGGTGATAACTGTATAGTAATGGACTTTGTTGAAGACGCAGATGAGATCAAATTAGAAGAAGAGGATGTTCTCATATGTTCCGATTCGTTTGAACAAATCGAATTTCTAGATCAGAATGAAGTTGTTGATCCAGGGGAGGATATAATAGAATTTGACGATGGTCCAGAGGCCCTTGATGGTAACACGTCAAATGTAAAGTTGACAAGCGAGGAACCTTCGAAACATAAGTCAAGGATTTGGGGTGAATCAATTACCACATCAAAGGGAACgtcaaagaaaaaatcaaatctgGGCAAGCCTCTTGTAATCAACTGTAATTGCGATATTTGTGGAGCAGGATTCACACATTCGTCCAATTTGCGGCGTCACCTCATTCGGCACGATCCTAAGGATATTTACTCATGCTCAATATGTGACTATCCGTTCACGATTTTAGAGAAAATGGTGGAACATCAGGAGGAGCACGACAAGGATGACTCAGTTCCGGAGAGCAACTCCACGACAAATAGACTGGAAGAAGACGTAGAATTGCCAACAGAAAATCTCGTCAGTATGAATAAATCATCGACCCAAGAGGAATTCAACCCACGCGCCAGAGATTTCAATGATTCGAAGGCGACTGTAAAACGAAATCACAAGTGTTCCGACTGCAATAAGGGATTCGTCTCGAAGTCAGCCCTCAGTGCTCACATGCGAATACATACAGGCGACAGACCCTATCGGTGTGAAGAGTGCGGCAAAGCATTCACCACACAGGGAGGACTCGTTCTACACACCCGCAGgCACACAGGACATCGGCCTTTTACGTGCAACATTTGTCAGAAGAGTTTTGTGGAGAGCAGCAATCTCAAGGTTCATATGCGTATCCATACCGGGGAGAAGCCGCACAAATGCACTATGTGTGGCCGCAGTTTTGCTCGGGTATTCCTCCTGGAGATCCATCAAAGGACACACACCGGAGAGCGACCTTATCAGTGTCCCTACTGTGATAAAGCCTTTGCCCAACAAGGGGACCTTTCTTCACATAAGCGAATTCACACTGGAGAACGACCCCATAAGTGTCCGTTTTGTCCAAAAGGATTTATTAAGAGTAGTGCCTtaaatcaacatttaaaaaagcaCTGGAAGTGGGCTGAACGCCTTCAAATGGAAGAACTTTCTGATAAAGTCCTGTATCCTGAAAAATCGCAGGACAACTTGcgaaatattgatattttactGATGGATTCTGGAGAAACAATACTATCTGGAGATTACGAATTAAGAGAATAA
- Protein Sequence
- MQKNITENTCRVCLTEQDILINIFDEAKDFQTKISDLLECCGDLKVDSCDNYPKIICGDCTHELLAAARFREKCKKTSAILSQFITTECTLEDGDLIEEPQKDDSGHGEEEDERYHDGDNCIVMDFVEDADEIKLEEEDVLICSDSFEQIEFLDQNEVVDPGEDIIEFDDGPEALDGNTSNVKLTSEEPSKHKSRIWGESITTSKGTSKKKSNLGKPLVINCNCDICGAGFTHSSNLRRHLIRHDPKDIYSCSICDYPFTILEKMVEHQEEHDKDDSVPESNSTTNRLEEDVELPTENLVSMNKSSTQEEFNPRARDFNDSKATVKRNHKCSDCNKGFVSKSALSAHMRIHTGDRPYRCEECGKAFTTQGGLVLHTRRHTGHRPFTCNICQKSFVESSNLKVHMRIHTGEKPHKCTMCGRSFARVFLLEIHQRTHTGERPYQCPYCDKAFAQQGDLSSHKRIHTGERPHKCPFCPKGFIKSSALNQHLKKHWKWAERLQMEELSDKVLYPEKSQDNLRNIDILLMDSGETILSGDYELRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00877539;
- 90% Identity
- iTF_00877539;
- 80% Identity
- iTF_00877317;