Lsin000436.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- lolal
- Assembly
- GCA_905404315.1
- Location
- FR990153.1:9652311-9657739[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5e-16 4.9e-13 49.7 0.0 3 42 329 369 328 372 0.95
Sequence Information
- Coding Sequence
- ATGTCACAGCAGTATAGTTTACGGTGGAATAATCACCAACCCAATTTTATATCAATGTTTACAACTCTTCTGAACACAAAAACTCTGGTTGACGTCACACTGGCAGCAGAAGGACAACATTTGCAGGCACACAAAGTTGTTCTGTCGGCATGTAGTACATACTTTCAGGCTCTATTTGTTGATAACCCTTCACGCCATccaattgtaatcttaaaagaTGTCACATTTGCTGATCTACGTACAATGGTTGATTTTATGTATTATGGTGAAGTGAACGTCACAGAGGAACAATTACCACAAGTTTTAGATACAGCaaagttattaaaaatcaaaGGTCTAACAGAAATGCCTGATTCAACCTCACTCACTCGGCAGAACACATCCTCCGAATTTCAGTCTCCTGGTGAATCGATGGAGTCTGTTAGACCCTCAGCTTCTCCATCATCATCTCCATGCAGAAAAAGAAGACGCAGAAAGAGTTCATCAGGCTCAACAAACCTAGGAACTTTAGTGCACAATGAAAGTAAAAATGAAGATTTTGGACAGAACTCTAGTGAGGTTGTTCGTGCTGATACAATAATGCTAAGCACCCTTCCACAGCAAAGAAGGAGGGAATATGAAGAAAGACTGGATGTTATACCACAGCCTGGAGAAACGCACAATTTAAATATGGAACCTATGTCCATGGACACAAACCCGGTTGGACTAGTACAAGGAGGACAGTGGAGTATGTTGGAGCACACTTACCCGCGATATCCGAATGCAGCATGTATAGGGGTCAGTGGCCTACAGCCCGATCCAGGAATGTACATCAATAACATGATGAACTCTCATACGGACCATGAAATAAATAACTACGGACAGAACTTAGGAGTTACAGGCCCGTCGCCTGGGCCCAGTTGTGCTGCAGAATCCCAAAACTCACACTTAATGGTAGTTCAAGGGCAGCCCAGGCGTAGAAGAACTACCAACCCTCAAGCTGCAGAAAACTTTCAAAAAGCTTTGGAAGCAGTCCGTACTGGTGGCATAGGATTTTGTAAGGCAGCTAAACTATTTGGTGTCAACAACAGAACATTGTGGTTGGAATATAAGAAGAAGGGCTATCCAAACAATAGACCCAGTATCAAGAGTAGAATAAAACGGGAACATTCATCACCTCCTCTTGagatgaaagatgaaatacCACAGCATGACCAACAAATGGCGTTGATATGCCCGCCGCATCCAGTCCCTGTAGGATTTATTGATCCTCGGCCGCTTGACTTTCAAGTACAAGTAAACAATCCCGGATTAAATGTAAACTATCAGATGCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTKTLVDVTLAAEGQHLQAHKVVLSACSTYFQALFVDNPSRHPIVILKDVTFADLRTMVDFMYYGEVNVTEEQLPQVLDTAKLLKIKGLTEMPDSTSLTRQNTSSEFQSPGESMESVRPSASPSSSPCRKRRRRKSSSGSTNLGTLVHNESKNEDFGQNSSEVVRADTIMLSTLPQQRRREYEERLDVIPQPGETHNLNMEPMSMDTNPVGLVQGGQWSMLEHTYPRYPNAACIGVSGLQPDPGMYINNMMNSHTDHEINNYGQNLGVTGPSPGPSCAAESQNSHLMVVQGQPRRRRTTNPQAAENFQKALEAVRTGGIGFCKAAKLFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHSSPPLEMKDEIPQHDQQMALICPPHPVPVGFIDPRPLDFQVQVNNPGLNVNYQMQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01203175;
- 90% Identity
- iTF_00874375; iTF_00876303; iTF_00875440; iTF_00875226; iTF_00874587;
- 80% Identity
- iTF_00876303; iTF_00875440; iTF_00875226;