Ljuv000266.1
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- lolal_1
- Assembly
- GCA_949711685.1
- Location
- CATIXL010000001.1:7053591-7059290[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-16 5.3e-13 49.7 0.0 3 42 329 369 328 372 0.95
Sequence Information
- Coding Sequence
- ATGTCACAGCAGTATAGTTTACGGTGGAATAATCACCAACCCAATTTTATATCAATGTTTACAACTCTTCTGAACACAAAAACTCTGGTTGACGTCACACTGGCAGCAGAAGGACAACATTTGCAGGCACACAAAGTTGTTCTGTCGGCATGTAGTACATACTTTCAGGCTCTATTTGTTGATAACCCTTCACGCCATccaattgtaatcttaaaagaTGTCACATTTGCTGATCTACGAACAATGGTTGATTTTATGTATTATGGTGAAGTGAACGTCACAGAGGAACAATTACCACAAGTTTTAGATACAGCaaagttattaaaaatcaaaGGTCTAACAGAAATGCCTGATTCAACCTCACTCACTCGTCAGAACACATCCTCCGAATTTCAGTCTCCTGGTGAATCGATGGAGTCTGTTAGACCCTCAGCTTCTCCATCATCATCTCCATGCAGAAAAAGAAGACGCAGAAAGAGTTCATCAGGCTCAACAAACCTAGGAACTTTAGTGCACAATGAAAGTAAAAATGAAGATTTTGGACAGAACTCTAGTGAGGTTGTTCGTGCTGATACAATAATGCTAAGCACCCTTCCACAGCAAAGAAGGAGGGAATATGAAGAAAGACTGGATGTTATACAACAGcCTGGAGAAACGCacaatttaaatatggaacCTATGTCCATGGACACAAACCCGGTTGGACTAGTACAAGGAGGACAGTGGAGTATGTTGGAGCACACTTACCCGCGATATCCGAATGCAGCATGTATAGGGGTCAGTGGCCTACAGCCCGATCCAGGAATGTACATCAATAACATGATGAACTCTCATACGGACCATGAAATAAATAACTACGGACAGAACTTAGGAGTTACAGGCCCATCGCCTGGGCCCAGTTGTGCTGCAGAATCCCAAAACTCACATTTAATGGTAGTTCAAGGGCAGCCCAGGCGTAGAAGAACTACCAACCCTCAAGCTGCAGAAAACTTTCAAAAAGCTTTGGAAGCAGTCCGTACTGGTGGCATAGGATTTTGTAAGGCAGCTAAACTATTTGGTGTCAACAACAGAACATTGTGGTTGGAATATAAGAAGAAGGGCTATCCAAACAATAGACCCAGTATCAAGAGTAGAATAAAACGGGAACATTCATCACCTCCTCTTgagatgaaagatgaaatacCACAGCATGACCAACAAATGGCGTTGATATGCCCGCCGCATCCAGTCCCTGTAGGATTTATCGATCCTCGGCCGCTTGACTTTCAAGTACAAGTAAACAATCCCGGATTAAATGTAAACTATCAGATGCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTKTLVDVTLAAEGQHLQAHKVVLSACSTYFQALFVDNPSRHPIVILKDVTFADLRTMVDFMYYGEVNVTEEQLPQVLDTAKLLKIKGLTEMPDSTSLTRQNTSSEFQSPGESMESVRPSASPSSSPCRKRRRRKSSSGSTNLGTLVHNESKNEDFGQNSSEVVRADTIMLSTLPQQRRREYEERLDVIQQPGETHNLNMEPMSMDTNPVGLVQGGQWSMLEHTYPRYPNAACIGVSGLQPDPGMYINNMMNSHTDHEINNYGQNLGVTGPSPGPSCAAESQNSHLMVVQGQPRRRRTTNPQAAENFQKALEAVRTGGIGFCKAAKLFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHSSPPLEMKDEIPQHDQQMALICPPHPVPVGFIDPRPLDFQVQVNNPGLNVNYQMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01203175;
- 90% Identity
- iTF_00876076;
- 80% Identity
- iTF_00874587;