Lko_34738-RB
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01131514.1:19838-37742[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.046 40 4.0 0.3 21 45 80 104 72 112 0.87 2 9 1.2 1e+03 -0.5 0.1 22 45 109 132 105 139 0.79 3 9 0.18 1.6e+02 2.1 1.6 18 46 132 161 124 169 0.76 4 9 0.37 3.2e+02 1.1 0.3 21 43 164 186 161 190 0.82 5 9 0.0047 4.1 7.2 0.0 21 44 192 215 186 220 0.89 6 9 0.0087 7.6 6.3 0.1 21 44 220 243 217 248 0.91 7 9 0.012 11 5.8 0.0 21 44 248 271 244 276 0.90 8 9 0.0024 2.1 8.1 0.1 21 44 276 299 273 303 0.91 9 9 0.0077 6.7 6.5 0.1 21 45 304 328 300 337 0.85
Sequence Information
- Coding Sequence
- atgccTGTTAGAAtcttcAGACGAAACTTGTGCTCGTTGAACACTAAAGAGGAAAGGGAATTCAACAAAActtttgaagaagctaaatcgatgagatctgagaaatgtggtccagtgtttagccctgagaagaACTACGAGAGTAAATGTTCACTAGAGAAGGGGTTTTCTAGAAACAATTCTCAaccgatttttgttgaaggtaaaagtcTGAATCCTTTATCACATTTTCACATAAGCAAAAACCCAATTTCGTGTTACGTTTGCAAAAAATACTTTCGAGAAAGgaaacatctcaaagaacacgttcgttgtcacattgctgagaaatcaatGTCATGCAAAGTCTGTAATACTGGTTTCACTTGTATTAGCAGTCTTAAAAGACATATGCGAAGTCACACCGgagagaagccttactgttgtaaTGTCTGCCCTGCATCATTCTTACGAAATTATCATTTACATAGTCATATGcaaactcacacaggcgagaagcctcactgttgtgatgtctgtcctgCATCTTTCTTAAGAAAGGAAGTACTTCGTATTCATAAGCGAACTCACACGGGCGAGAAGCCTCacggttgtgatgtctgtccagcatcattctcacaaaagggtagtctacgaaatcatatgttaactcacacaggcgagaagccttactgttgtgatgtctgtccagcatcattctctCTAAAGGGAAATCTACAAagacatatgttaactcacacaggcgagaagccttactgttgtgatgtctgtccagcatcattctcactaaagggaaATCTTCGAAATCacatgttaactcacacaggcgagaagcctaactgttgtgatgtctgtccagcattaTTCTCTCTAAAGGGAAATCTACAAagacatatgttaactcacacaggcgagaagccttactgttgtgatgtctgtccagcatcattctcactaaagggaaATCTTCGAAATCacatgttaactcacacaggcgagaagcctaactgtttgaaattttgtaATGCACAAGCTTCCTTCTGTCAAAAGGGTAGTCTGGAAGAACATTTGCGAACTCTCACAGTTAAGAAACTGTACTTTTGTTCCTTCTGTAATGCTTCTTCTTCAATAAATGGTTATTTGAAAACTCATATATATTACAAAATCTCACGGAATCTCACACAGACCCGAAATCATATACTTGTGACAacggagaaatattatttttatgtgacatCTGTCAAGTATGATTCAGGGAGAAAGGACATCTTAAAATACACATGTGTAGTCATACTGGCcaagaaacattttcatgtggCACCTGTGAAGAATCTTTCAGTAGAAATAGTGATCTTATAA
- Protein Sequence
- MPVRIFRRNLCSLNTKEEREFNKTFEEAKSMRSEKCGPVFSPEKNYESKCSLEKGFSRNNSQPIFVEGKSLNPLSHFHISKNPISCYVCKKYFRERKHLKEHVRCHIAEKSMSCKVCNTGFTCISSLKRHMRSHTGEKPYCCNVCPASFLRNYHLHSHMQTHTGEKPHCCDVCPASFLRKEVLRIHKRTHTGEKPHGCDVCPASFSQKGSLRNHMLTHTGEKPYCCDVCPASFSLKGNLQRHMLTHTGEKPYCCDVCPASFSLKGNLRNHMLTHTGEKPNCCDVCPALFSLKGNLQRHMLTHTGEKPYCCDVCPASFSLKGNLRNHMLTHTGEKPNCLKFCNAQASFCQKGSLEEHLRTLTVKKLYFCSFCNASSSINGYLKTHIYYKISRNLTQTRNHILVTTEKYYFYVTSVKYDSGRKDILKYTCVVILAKKHFHVAPVKNLSVEIVIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872508;
- 90% Identity
- iTF_00872508;
- 80% Identity
- iTF_00872508;