Lko_34738-RB
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01131514.1:19838-37742[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.042 2 8.6 5.4 2 21 85 104 84 106 0.93 2 11 0.00072 0.034 14.2 3.5 2 23 113 134 112 134 0.97 3 11 0.0019 0.088 12.9 6.4 1 23 140 162 140 162 0.98 4 11 0.02 0.96 9.6 2.8 1 23 168 190 168 190 0.97 5 11 2.5e-06 0.00012 21.9 0.2 3 23 198 218 197 218 0.99 6 11 8.5e-07 4e-05 23.4 1.0 1 23 224 246 224 246 0.98 7 11 2.1e-06 0.0001 22.1 1.0 1 23 252 274 252 274 0.98 8 11 9.9e-05 0.0047 16.9 0.9 3 23 282 302 281 302 0.97 9 11 2.1e-06 0.0001 22.1 1.0 1 23 308 330 308 330 0.98 10 11 0.3 14 5.9 0.1 9 22 346 359 337 359 0.89 11 11 0.18 8.6 6.6 0.5 1 20 366 385 366 387 0.94
Sequence Information
- Coding Sequence
- atgccTGTTAGAAtcttcAGACGAAACTTGTGCTCGTTGAACACTAAAGAGGAAAGGGAATTCAACAAAActtttgaagaagctaaatcgatgagatctgagaaatgtggtccagtgtttagccctgagaagaACTACGAGAGTAAATGTTCACTAGAGAAGGGGTTTTCTAGAAACAATTCTCAaccgatttttgttgaaggtaaaagtcTGAATCCTTTATCACATTTTCACATAAGCAAAAACCCAATTTCGTGTTACGTTTGCAAAAAATACTTTCGAGAAAGgaaacatctcaaagaacacgttcgttgtcacattgctgagaaatcaatGTCATGCAAAGTCTGTAATACTGGTTTCACTTGTATTAGCAGTCTTAAAAGACATATGCGAAGTCACACCGgagagaagccttactgttgtaaTGTCTGCCCTGCATCATTCTTACGAAATTATCATTTACATAGTCATATGcaaactcacacaggcgagaagcctcactgttgtgatgtctgtcctgCATCTTTCTTAAGAAAGGAAGTACTTCGTATTCATAAGCGAACTCACACGGGCGAGAAGCCTCacggttgtgatgtctgtccagcatcattctcacaaaagggtagtctacgaaatcatatgttaactcacacaggcgagaagccttactgttgtgatgtctgtccagcatcattctctCTAAAGGGAAATCTACAAagacatatgttaactcacacaggcgagaagccttactgttgtgatgtctgtccagcatcattctcactaaagggaaATCTTCGAAATCacatgttaactcacacaggcgagaagcctaactgttgtgatgtctgtccagcattaTTCTCTCTAAAGGGAAATCTACAAagacatatgttaactcacacaggcgagaagccttactgttgtgatgtctgtccagcatcattctcactaaagggaaATCTTCGAAATCacatgttaactcacacaggcgagaagcctaactgtttgaaattttgtaATGCACAAGCTTCCTTCTGTCAAAAGGGTAGTCTGGAAGAACATTTGCGAACTCTCACAGTTAAGAAACTGTACTTTTGTTCCTTCTGTAATGCTTCTTCTTCAATAAATGGTTATTTGAAAACTCATATATATTACAAAATCTCACGGAATCTCACACAGACCCGAAATCATATACTTGTGACAacggagaaatattatttttatgtgacatCTGTCAAGTATGATTCAGGGAGAAAGGACATCTTAAAATACACATGTGTAGTCATACTGGCcaagaaacattttcatgtggCACCTGTGAAGAATCTTTCAGTAGAAATAGTGATCTTATAA
- Protein Sequence
- MPVRIFRRNLCSLNTKEEREFNKTFEEAKSMRSEKCGPVFSPEKNYESKCSLEKGFSRNNSQPIFVEGKSLNPLSHFHISKNPISCYVCKKYFRERKHLKEHVRCHIAEKSMSCKVCNTGFTCISSLKRHMRSHTGEKPYCCNVCPASFLRNYHLHSHMQTHTGEKPHCCDVCPASFLRKEVLRIHKRTHTGEKPHGCDVCPASFSQKGSLRNHMLTHTGEKPYCCDVCPASFSLKGNLQRHMLTHTGEKPYCCDVCPASFSLKGNLRNHMLTHTGEKPNCCDVCPALFSLKGNLQRHMLTHTGEKPYCCDVCPASFSLKGNLRNHMLTHTGEKPNCLKFCNAQASFCQKGSLEEHLRTLTVKKLYFCSFCNASSSINGYLKTHIYYKISRNLTQTRNHILVTTEKYYFYVTSVKYDSGRKDILKYTCVVILAKKHFHVAPVKNLSVEIVIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872742;
- 90% Identity
- iTF_00872742;
- 80% Identity
- iTF_00872742;