Basic Information

Insect: Laupala kohalensis
Gene Symbol: -
Assembly: GCA_002313205.1
Location: NNCF01126382.1:79200-112995[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0036 3.2 7.5 0.0 26 43 93 110 84 118 0.87

2 11 0.004 3.5 7.4 0.0 26 43 195 212 185 218 0.86

3 11 1.4 1.2e+03 -0.7 0.2 25 48 278 301 267 306 0.80

4 11 3 2.6e+03 -1.8 0.0 23 44 304 325 299 335 0.82

5 11 0.8 7e+02 0.0 0.0 21 43 330 352 324 357 0.79

6 11 0.004 3.5 7.4 0.0 22 44 359 381 355 389 0.89

7 11 0.32 2.8e+02 1.3 0.1 21 43 470 492 443 497 0.85

8 11 0.67 5.8e+02 0.3 0.0 26 43 559 576 553 581 0.88

9 11 1.6 1.4e+03 -1.0 0.1 22 45 611 634 607 637 0.85

10 11 0.0085 7.4 6.3 0.0 21 44 638 661 634 670 0.90

11 11 2.2 2e+03 -1.4 0.0 19 44 663 689 661 692 0.75

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0036	3.2	7.5	0.0	26	43	93	110	84	118	0.87
2	11	0.004	3.5	7.4	0.0	26	43	195	212	185	218	0.86
3	11	1.4	1.2e+03	-0.7	0.2	25	48	278	301	267	306	0.80
4	11	3	2.6e+03	-1.8	0.0	23	44	304	325	299	335	0.82
5	11	0.8	7e+02	0.0	0.0	21	43	330	352	324	357	0.79
6	11	0.004	3.5	7.4	0.0	22	44	359	381	355	389	0.89
7	11	0.32	2.8e+02	1.3	0.1	21	43	470	492	443	497	0.85
8	11	0.67	5.8e+02	0.3	0.0	26	43	559	576	553	581	0.88
9	11	1.6	1.4e+03	-1.0	0.1	22	45	611	634	607	637	0.85
10	11	0.0085	7.4	6.3	0.0	21	44	638	661	634	670	0.90
11	11	2.2	2e+03	-1.4	0.0	19	44	663	689	661	692	0.75

Sequence Information

Coding Sequence: ATGTGGGAACACACTCTTGAAAAACTCTTCCTgcgagaaaattgtaaaagatCTTTGCCTCCAAAGATTGTTCTGCAAATACATTACTTCTCACTCGTTGGTTTCAAAGAAAACCTCATCTCCTTGGGGACACAAAATTCTTGTGAGAAGGATAAGGAATTCAACAGCGTCTCAGAAGATCAGGAAACGTCAAGTTCTGGGGAATGTGTTGCAGTAAATAGCTCTGGAAACAACAACAGCGAAATTAAGTATAATACTTCAGGGCAAAGGGaattttcatgtaacatttgTGAAGAAGTATTTGATGAAAGTCGCAATCTAGAGCAACATTCACTCGTTCACAGTAACGTTCAACATATATCATGCTGTACTTGTGGTAAGTTCTttacaaagaaagaaagtttTGAGGAACACACTTGTTCTCACGGTACGAAGGAATCATATCAAGGTGGCGTCTCTAAATCATCTTTTGCTTCGAAGGGAAAAGATCAGGAAATATCAAGTTCTGGGAAATGTGTTGCAGTATTCAGACCGGAAATGAACAGCGAAATTAAGTTTCATAGTTCACGTGGGAAGCATTTTTCATGTAACATTTGTGAAGAAGTATTTGATGAAAGTCGCAATCTGGAGCAACATTCACTCGTTCACAGTAACGATCAACATATATCGTGTTGTACATGTGGAAAGTTCTTTACTAAGAAAGAAAGTTTTGAGGAACACACTTGTTCTCACGGTACGAAGGAATCGTATCAAGATGGCGTCTCTAAATCATCTTTTGCTTCGAAGGGAAGTCTGCAAAGCCATATGCGGAATCTCTCTGACGATAAACGTTTTTCGTGTGATGTGTGTCGTGCATGTTTCAAGTGGAAATGTCACTTGACTAAGCATATGGTAATTCATACTCTTCAGAGACCTTTTCCATGTGATTTCTGTAAAGCGTCTTTCAAGAGAGAAAGCGAATTGACTACTCATATGGTAACTCACTCTGATGAGAAACCTTATTCGTGTGTTTTGTGTAACGCATCTTTCAAGCTGAAGGGTCACCTGACCACTCATATGGTGACTCACTGTGACGAGAAACCTTTTTCGTGTGACGTCTGTGGTGCATCTTTCAAGCAGAAAGGGAACCTCACTGCGCATATGGTGACTCACTCAGCCGAGAAGCGTTTTCTATGTGATGTCTGCCCGACGGCTTTCAAGCACAAAAGTCACCTGACTACGCATATGGTGACTCACGGTGACGAGAAACAATTCTCATGTAATTTCTGTAAAGCATCTTTCTTTCACAAAAAGTATCTTAAAAGTCATATGGTGACTCATTCTGGTGAAAAATCTTTCTCGTGCGTTGTCTGTAGAAAATGTTTCAAGCGGAAAGTTGAACTGACGACGCATATGGTGACTCACTCTGAtgagaaacctttttcatgtgatGTCTGTCATACATCGTTTAAGCTGAAACAACACCTGACTACGCATATGGTAACTCACAGTGACAAGGAACAATTTTCATCTGATTTCTGTAAAGCATCTTTCTCTCACAAAGAGCCTCTTGAAACTCATATGGTGACTCATTCTGGTGCTAAACTTTTTTCATGCGTTGTCTGTAAAGCACGTTTTAATCGGAAAAGCGATCTGACTACGCATATGGTAACTCACACTGGTCAGAAATCTTTTCAGTGTAACTTCTGTGAAGCATCTTTCAAGCAGAAAGGTCACCTTACTCGGCACAAAgtaactcacactggagagaaaagttttttatgtgaTTTCTGTAAAGCATCTTTCTTTCACAAAGAGTCTCTTAAAACTCATATAATAACTCATTCCGGTGATAAACCGTATTTATGCGTTGTCTGTCAAAAACGTTTTAAGCGTAAACGCGTTCTGACTACGCATATGCAAACTCACACAGGTGAGAAACCATTCACGTGTGATGTCTGTAAAACTTCTTTCGCTTTGAAGAGATATTTACGAGACCATATGCGGAGTCATTCCGGAGAGAGACGTTTTTCATGTGATGTCTGTAGAGCATCTTTCACTTGGAAGAATTGTCTCCAAAAGCATATGATTACACACTCTCGAAAAAAAACCCTCGCGTGA
Protein Sequence: MWEHTLEKLFLRENCKRSLPPKIVLQIHYFSLVGFKENLISLGTQNSCEKDKEFNSVSEDQETSSSGECVAVNSSGNNNSEIKYNTSGQREFSCNICEEVFDESRNLEQHSLVHSNVQHISCCTCGKFFTKKESFEEHTCSHGTKESYQGGVSKSSFASKGKDQEISSSGKCVAVFRPEMNSEIKFHSSRGKHFSCNICEEVFDESRNLEQHSLVHSNDQHISCCTCGKFFTKKESFEEHTCSHGTKESYQDGVSKSSFASKGSLQSHMRNLSDDKRFSCDVCRACFKWKCHLTKHMVIHTLQRPFPCDFCKASFKRESELTTHMVTHSDEKPYSCVLCNASFKLKGHLTTHMVTHCDEKPFSCDVCGASFKQKGNLTAHMVTHSAEKRFLCDVCPTAFKHKSHLTTHMVTHGDEKQFSCNFCKASFFHKKYLKSHMVTHSGEKSFSCVVCRKCFKRKVELTTHMVTHSDEKPFSCDVCHTSFKLKQHLTTHMVTHSDKEQFSSDFCKASFSHKEPLETHMVTHSGAKLFSCVVCKARFNRKSDLTTHMVTHTGQKSFQCNFCEASFKQKGHLTRHKVTHTGEKSFLCDFCKASFFHKESLKTHIITHSGDKPYLCVVCQKRFKRKRVLTTHMQTHTGEKPFTCDVCKTSFALKRYLRDHMRSHSGERRFSCDVCRASFTWKNCLQKHMITHSRKKTLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00872457;
90% Identity: iTF_00872457;
80% Identity: iTF_00872457;