Basic Information

Insect: Laupala kohalensis
Gene Symbol: -
Assembly: GCA_002313205.1
Location: NNCF01126382.1:79200-112995[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00022 0.01 15.8 0.1 1 23 92 114 92 114 0.96

2 20 0.0078 0.37 10.9 6.3 2 23 121 142 120 142 0.96

3 20 0.00022 0.01 15.8 0.1 1 23 194 216 194 216 0.96

4 20 0.0078 0.37 10.9 6.3 2 23 223 244 222 244 0.96

5 20 0.43 20 5.5 0.1 9 21 258 270 256 271 0.92

6 20 0.08 3.8 7.7 6.6 1 23 278 300 278 300 0.97

7 20 5.8e-06 0.00027 20.8 0.7 1 23 306 328 306 328 0.98

8 20 8.8e-05 0.0041 17.1 1.5 1 23 334 356 334 356 0.98

9 20 1.4e-07 6.5e-06 25.9 0.2 1 23 362 384 362 384 0.98

10 20 6.9e-06 0.00033 20.5 3.3 1 23 390 412 390 412 0.95

11 20 0.0011 0.053 13.6 5.8 1 23 418 440 418 440 0.98

12 20 1.2e-05 0.00054 19.8 3.4 1 23 446 468 446 468 0.98

13 20 0.00013 0.0062 16.5 5.4 1 23 474 496 474 496 0.98

14 20 0.012 0.58 10.3 0.4 5 23 506 524 505 524 0.95

15 20 9.8e-06 0.00046 20.1 0.9 1 23 530 552 530 552 0.98

16 20 3.1e-05 0.0014 18.5 3.8 1 23 558 580 558 580 0.98

17 20 0.00068 0.032 14.3 3.0 1 23 586 608 586 608 0.95

18 20 2.9e-05 0.0014 18.6 2.2 1 23 614 636 614 636 0.96

19 20 1.3e-05 0.00063 19.6 1.7 1 23 642 664 642 664 0.98

20 20 0.0021 0.1 12.7 2.4 1 23 670 692 670 692 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00022	0.01	15.8	0.1	1	23	92	114	92	114	0.96
2	20	0.0078	0.37	10.9	6.3	2	23	121	142	120	142	0.96
3	20	0.00022	0.01	15.8	0.1	1	23	194	216	194	216	0.96
4	20	0.0078	0.37	10.9	6.3	2	23	223	244	222	244	0.96
5	20	0.43	20	5.5	0.1	9	21	258	270	256	271	0.92
6	20	0.08	3.8	7.7	6.6	1	23	278	300	278	300	0.97
7	20	5.8e-06	0.00027	20.8	0.7	1	23	306	328	306	328	0.98
8	20	8.8e-05	0.0041	17.1	1.5	1	23	334	356	334	356	0.98
9	20	1.4e-07	6.5e-06	25.9	0.2	1	23	362	384	362	384	0.98
10	20	6.9e-06	0.00033	20.5	3.3	1	23	390	412	390	412	0.95
11	20	0.0011	0.053	13.6	5.8	1	23	418	440	418	440	0.98
12	20	1.2e-05	0.00054	19.8	3.4	1	23	446	468	446	468	0.98
13	20	0.00013	0.0062	16.5	5.4	1	23	474	496	474	496	0.98
14	20	0.012	0.58	10.3	0.4	5	23	506	524	505	524	0.95
15	20	9.8e-06	0.00046	20.1	0.9	1	23	530	552	530	552	0.98
16	20	3.1e-05	0.0014	18.5	3.8	1	23	558	580	558	580	0.98
17	20	0.00068	0.032	14.3	3.0	1	23	586	608	586	608	0.95
18	20	2.9e-05	0.0014	18.6	2.2	1	23	614	636	614	636	0.96
19	20	1.3e-05	0.00063	19.6	1.7	1	23	642	664	642	664	0.98
20	20	0.0021	0.1	12.7	2.4	1	23	670	692	670	692	0.98

Sequence Information

Coding Sequence: ATGTGGGAACACACTCTTGAAAAACTCTTCCTgcgagaaaattgtaaaagatCTTTGCCTCCAAAGATTGTTCTGCAAATACATTACTTCTCACTCGTTGGTTTCAAAGAAAACCTCATCTCCTTGGGGACACAAAATTCTTGTGAGAAGGATAAGGAATTCAACAGCGTCTCAGAAGATCAGGAAACGTCAAGTTCTGGGGAATGTGTTGCAGTAAATAGCTCTGGAAACAACAACAGCGAAATTAAGTATAATACTTCAGGGCAAAGGGaattttcatgtaacatttgTGAAGAAGTATTTGATGAAAGTCGCAATCTAGAGCAACATTCACTCGTTCACAGTAACGTTCAACATATATCATGCTGTACTTGTGGTAAGTTCTttacaaagaaagaaagtttTGAGGAACACACTTGTTCTCACGGTACGAAGGAATCATATCAAGGTGGCGTCTCTAAATCATCTTTTGCTTCGAAGGGAAAAGATCAGGAAATATCAAGTTCTGGGAAATGTGTTGCAGTATTCAGACCGGAAATGAACAGCGAAATTAAGTTTCATAGTTCACGTGGGAAGCATTTTTCATGTAACATTTGTGAAGAAGTATTTGATGAAAGTCGCAATCTGGAGCAACATTCACTCGTTCACAGTAACGATCAACATATATCGTGTTGTACATGTGGAAAGTTCTTTACTAAGAAAGAAAGTTTTGAGGAACACACTTGTTCTCACGGTACGAAGGAATCGTATCAAGATGGCGTCTCTAAATCATCTTTTGCTTCGAAGGGAAGTCTGCAAAGCCATATGCGGAATCTCTCTGACGATAAACGTTTTTCGTGTGATGTGTGTCGTGCATGTTTCAAGTGGAAATGTCACTTGACTAAGCATATGGTAATTCATACTCTTCAGAGACCTTTTCCATGTGATTTCTGTAAAGCGTCTTTCAAGAGAGAAAGCGAATTGACTACTCATATGGTAACTCACTCTGATGAGAAACCTTATTCGTGTGTTTTGTGTAACGCATCTTTCAAGCTGAAGGGTCACCTGACCACTCATATGGTGACTCACTGTGACGAGAAACCTTTTTCGTGTGACGTCTGTGGTGCATCTTTCAAGCAGAAAGGGAACCTCACTGCGCATATGGTGACTCACTCAGCCGAGAAGCGTTTTCTATGTGATGTCTGCCCGACGGCTTTCAAGCACAAAAGTCACCTGACTACGCATATGGTGACTCACGGTGACGAGAAACAATTCTCATGTAATTTCTGTAAAGCATCTTTCTTTCACAAAAAGTATCTTAAAAGTCATATGGTGACTCATTCTGGTGAAAAATCTTTCTCGTGCGTTGTCTGTAGAAAATGTTTCAAGCGGAAAGTTGAACTGACGACGCATATGGTGACTCACTCTGAtgagaaacctttttcatgtgatGTCTGTCATACATCGTTTAAGCTGAAACAACACCTGACTACGCATATGGTAACTCACAGTGACAAGGAACAATTTTCATCTGATTTCTGTAAAGCATCTTTCTCTCACAAAGAGCCTCTTGAAACTCATATGGTGACTCATTCTGGTGCTAAACTTTTTTCATGCGTTGTCTGTAAAGCACGTTTTAATCGGAAAAGCGATCTGACTACGCATATGGTAACTCACACTGGTCAGAAATCTTTTCAGTGTAACTTCTGTGAAGCATCTTTCAAGCAGAAAGGTCACCTTACTCGGCACAAAgtaactcacactggagagaaaagttttttatgtgaTTTCTGTAAAGCATCTTTCTTTCACAAAGAGTCTCTTAAAACTCATATAATAACTCATTCCGGTGATAAACCGTATTTATGCGTTGTCTGTCAAAAACGTTTTAAGCGTAAACGCGTTCTGACTACGCATATGCAAACTCACACAGGTGAGAAACCATTCACGTGTGATGTCTGTAAAACTTCTTTCGCTTTGAAGAGATATTTACGAGACCATATGCGGAGTCATTCCGGAGAGAGACGTTTTTCATGTGATGTCTGTAGAGCATCTTTCACTTGGAAGAATTGTCTCCAAAAGCATATGATTACACACTCTCGAAAAAAAACCCTCGCGTGA
Protein Sequence: MWEHTLEKLFLRENCKRSLPPKIVLQIHYFSLVGFKENLISLGTQNSCEKDKEFNSVSEDQETSSSGECVAVNSSGNNNSEIKYNTSGQREFSCNICEEVFDESRNLEQHSLVHSNVQHISCCTCGKFFTKKESFEEHTCSHGTKESYQGGVSKSSFASKGKDQEISSSGKCVAVFRPEMNSEIKFHSSRGKHFSCNICEEVFDESRNLEQHSLVHSNDQHISCCTCGKFFTKKESFEEHTCSHGTKESYQDGVSKSSFASKGSLQSHMRNLSDDKRFSCDVCRACFKWKCHLTKHMVIHTLQRPFPCDFCKASFKRESELTTHMVTHSDEKPYSCVLCNASFKLKGHLTTHMVTHCDEKPFSCDVCGASFKQKGNLTAHMVTHSAEKRFLCDVCPTAFKHKSHLTTHMVTHGDEKQFSCNFCKASFFHKKYLKSHMVTHSGEKSFSCVVCRKCFKRKVELTTHMVTHSDEKPFSCDVCHTSFKLKQHLTTHMVTHSDKEQFSSDFCKASFSHKEPLETHMVTHSGAKLFSCVVCKARFNRKSDLTTHMVTHTGQKSFQCNFCEASFKQKGHLTRHKVTHTGEKSFLCDFCKASFFHKESLKTHIITHSGDKPYLCVVCQKRFKRKRVLTTHMQTHTGEKPFTCDVCKTSFALKRYLRDHMRSHSGERRFSCDVCRASFTWKNCLQKHMITHSRKKTLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00872740;
90% Identity: iTF_00872740;
80% Identity: iTF_00872740;