Lstr040255.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421927.1:8253129-8254679[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0021 47 5.5 0.0 26 48 65 87 62 93 0.90 2 9 0.093 2.1e+03 0.2 0.1 25 48 94 117 87 123 0.82 3 9 0.003 69 5.0 0.3 21 50 149 178 143 183 0.88 4 9 0.24 5.4e+03 -1.1 0.0 25 48 183 206 178 208 0.83 5 9 0.00049 11 7.5 0.0 22 44 239 261 227 267 0.88 6 9 1.4e-05 0.31 12.5 0.1 16 49 301 334 299 337 0.87 7 9 6.9e-06 0.16 13.4 0.4 22 48 335 361 333 367 0.91 8 9 0.016 3.6e+02 2.7 0.2 24 48 367 391 362 394 0.86 9 9 0.37 8.3e+03 -1.7 0.1 27 50 427 450 425 453 0.82
Sequence Information
- Coding Sequence
- ATGAAAGTGGAAGTTAATTGTGAACAGGATATCAGTGGTAACCCATACCAGCCTCCTGAACATGTGTTCAATATCAAGAATGAAGATGGAAACATAAATTTACCATATGAAGAATCAAACAATGAAGAAAATCCTAAAGGATCTCTTGAGATTGTCGGTAAAGTATATGAGAATGGCAAGATTAACAGGCTGCAATGCCCACAATGTgataatacttttaaaaatagagCTAACTTGAAGCAACACCTTAAATTTGTGCATTCGTCAGAAGATGATATAGTTGAATGTGACAAGTGTTACAGGACTTTCAAGTCCATCGGTCATTTACGTTCGCATATTCATTCCGTTCATGCTGAGGAAAAAGAGGTCAGTTGTGAACACTGTGGAAAAGTGTTTTCTAACAAAAAACGCCTTAAcaatcatatattttattcgCATCCAGAACCAGAGGAGAGTGTCAATTGTAATGTTTGCAACAAATCTTTTAAGCGTAGATATAACTTGAAAATACATATGAGGCTTGTCCATCCAGCAGAAGACAGATCCGTTCAGTGCCCACATTGTGACAAGAAGTTTAAAGTGGACATGCTGCTGCAGAGGCATATAAAATGGAGTCACCCGCAAGACGGAATGATGTACCGCTGCCCAGAATGTGGGAGGACCTTACCATCTATTGCTTGCTTCAGAAAACACATGCAGAATGTACATTCAGGCTCCCAGGATGCCATCTGCAAAATCTGCTCTAAAGTTTTCAAAACAGTCAAAACATTAAACAGACATGAGAAAAACATCCACGGTGGAGAGAAAGTTGAAGTGAAACCGCACAAAGTAGGAGACATACCGTGTTCACAGTGCGATAAAAAATTTACTACCAATACAGCCTTGTTTTGGCATTTCGAGAGACACCATTCCGAGAATAAAAGAAGCAACACTTGCCAAATCTGCAACAAAGAGCTGTCTGATCAAGGAAGCTTGAAGAGACATTTAGAGATGGTGCATTCGTTTGATCCTGTCAACTGTCCGATCTGCTCCAAGACTTTTAAAAGCCACATGAATTTACAAAGGCATATTAGAGTCACCCACGCTCCGCCCGAAGCGGCTCAAAAATGTGACATTTGTGACAAAACATTCAAATGTTCAATGCATTTACGGATACACATAAACGCTGTGCATTCTACAGATGGCATCTTCACCTGTGACATTTGCAATAAAGAATTTtcctcaaaaaaatatatgttgaaACATAAGAAGACACACGTTGATGTCAAACTGTTTCCATGTGCCATTTGCAATAAGATGTTCAAATGTGTTAATGATGTTAAGAAACACGCTAAACGGGTGCATATGAAGACTCCAGTGAAGACTGAAAATGAAGCTATGGCTCAAACAGACTCTCAAACTTCAGAAGATGTGGAAGCTAACAATTCAGGTCTGAGTTGTTCTAAATGTGGCAATGAGTTTGTGAATGAAACTGACCTACATTCTCATATTGAGAATTGTGGTGAGCTCCCAGCGCTGGCTTTTGTTAAAGTTGAAATTCAGGACGAGTAG
- Protein Sequence
- MKVEVNCEQDISGNPYQPPEHVFNIKNEDGNINLPYEESNNEENPKGSLEIVGKVYENGKINRLQCPQCDNTFKNRANLKQHLKFVHSSEDDIVECDKCYRTFKSIGHLRSHIHSVHAEEKEVSCEHCGKVFSNKKRLNNHIFYSHPEPEESVNCNVCNKSFKRRYNLKIHMRLVHPAEDRSVQCPHCDKKFKVDMLLQRHIKWSHPQDGMMYRCPECGRTLPSIACFRKHMQNVHSGSQDAICKICSKVFKTVKTLNRHEKNIHGGEKVEVKPHKVGDIPCSQCDKKFTTNTALFWHFERHHSENKRSNTCQICNKELSDQGSLKRHLEMVHSFDPVNCPICSKTFKSHMNLQRHIRVTHAPPEAAQKCDICDKTFKCSMHLRIHINAVHSTDGIFTCDICNKEFSSKKYMLKHKKTHVDVKLFPCAICNKMFKCVNDVKKHAKRVHMKTPVKTENEAMAQTDSQTSEDVEANNSGLSCSKCGNEFVNETDLHSHIENCGELPALAFVKVEIQDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148678;
- 90% Identity
- iTF_00871553;
- 80% Identity
- iTF_00871553;