Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421927.1:8253129-8254679[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1e-05 0.00088 20.9 1.0 2 23 65 87 64 87 0.94

2 14 0.00073 0.064 15.0 2.8 2 23 95 117 94 117 0.95

3 14 2.1e-05 0.0019 19.8 2.3 2 23 124 146 123 146 0.92

4 14 1e-07 9.1e-06 27.1 1.2 3 23 155 176 153 176 0.95

5 14 4.3e-05 0.0038 18.9 1.2 2 23 184 206 183 206 0.96

6 14 0.00013 0.011 17.4 0.8 1 23 213 236 213 236 0.97

7 14 0.00012 0.01 17.5 1.1 3 23 244 265 243 265 0.95

8 14 0.00014 0.012 17.3 1.9 2 23 281 302 280 303 0.93

9 14 7.7e-05 0.0068 18.1 0.3 2 23 311 333 311 333 0.96

10 14 6.9e-07 6.1e-05 24.5 1.8 3 23 340 361 338 361 0.96

11 14 0.0012 0.1 14.3 3.2 2 23 369 391 368 391 0.95

12 14 2.5e-05 0.0022 19.6 3.7 1 23 397 419 397 419 0.99

13 14 0.088 7.7 8.5 1.6 1 23 425 448 425 448 0.93

14 14 0.012 1.1 11.2 0.2 2 20 479 497 478 499 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1e-05	0.00088	20.9	1.0	2	23	65	87	64	87	0.94
2	14	0.00073	0.064	15.0	2.8	2	23	95	117	94	117	0.95
3	14	2.1e-05	0.0019	19.8	2.3	2	23	124	146	123	146	0.92
4	14	1e-07	9.1e-06	27.1	1.2	3	23	155	176	153	176	0.95
5	14	4.3e-05	0.0038	18.9	1.2	2	23	184	206	183	206	0.96
6	14	0.00013	0.011	17.4	0.8	1	23	213	236	213	236	0.97
7	14	0.00012	0.01	17.5	1.1	3	23	244	265	243	265	0.95
8	14	0.00014	0.012	17.3	1.9	2	23	281	302	280	303	0.93
9	14	7.7e-05	0.0068	18.1	0.3	2	23	311	333	311	333	0.96
10	14	6.9e-07	6.1e-05	24.5	1.8	3	23	340	361	338	361	0.96
11	14	0.0012	0.1	14.3	3.2	2	23	369	391	368	391	0.95
12	14	2.5e-05	0.0022	19.6	3.7	1	23	397	419	397	419	0.99
13	14	0.088	7.7	8.5	1.6	1	23	425	448	425	448	0.93
14	14	0.012	1.1	11.2	0.2	2	20	479	497	478	499	0.93

Sequence Information

Coding Sequence: ATGAAAGTGGAAGTTAATTGTGAACAGGATATCAGTGGTAACCCATACCAGCCTCCTGAACATGTGTTCAATATCAAGAATGAAGATGGAAACATAAATTTACCATATGAAGAATCAAACAATGAAGAAAATCCTAAAGGATCTCTTGAGATTGTCGGTAAAGTATATGAGAATGGCAAGATTAACAGGCTGCAATGCCCACAATGTgataatacttttaaaaatagagCTAACTTGAAGCAACACCTTAAATTTGTGCATTCGTCAGAAGATGATATAGTTGAATGTGACAAGTGTTACAGGACTTTCAAGTCCATCGGTCATTTACGTTCGCATATTCATTCCGTTCATGCTGAGGAAAAAGAGGTCAGTTGTGAACACTGTGGAAAAGTGTTTTCTAACAAAAAACGCCTTAAcaatcatatattttattcgCATCCAGAACCAGAGGAGAGTGTCAATTGTAATGTTTGCAACAAATCTTTTAAGCGTAGATATAACTTGAAAATACATATGAGGCTTGTCCATCCAGCAGAAGACAGATCCGTTCAGTGCCCACATTGTGACAAGAAGTTTAAAGTGGACATGCTGCTGCAGAGGCATATAAAATGGAGTCACCCGCAAGACGGAATGATGTACCGCTGCCCAGAATGTGGGAGGACCTTACCATCTATTGCTTGCTTCAGAAAACACATGCAGAATGTACATTCAGGCTCCCAGGATGCCATCTGCAAAATCTGCTCTAAAGTTTTCAAAACAGTCAAAACATTAAACAGACATGAGAAAAACATCCACGGTGGAGAGAAAGTTGAAGTGAAACCGCACAAAGTAGGAGACATACCGTGTTCACAGTGCGATAAAAAATTTACTACCAATACAGCCTTGTTTTGGCATTTCGAGAGACACCATTCCGAGAATAAAAGAAGCAACACTTGCCAAATCTGCAACAAAGAGCTGTCTGATCAAGGAAGCTTGAAGAGACATTTAGAGATGGTGCATTCGTTTGATCCTGTCAACTGTCCGATCTGCTCCAAGACTTTTAAAAGCCACATGAATTTACAAAGGCATATTAGAGTCACCCACGCTCCGCCCGAAGCGGCTCAAAAATGTGACATTTGTGACAAAACATTCAAATGTTCAATGCATTTACGGATACACATAAACGCTGTGCATTCTACAGATGGCATCTTCACCTGTGACATTTGCAATAAAGAATTTtcctcaaaaaaatatatgttgaaACATAAGAAGACACACGTTGATGTCAAACTGTTTCCATGTGCCATTTGCAATAAGATGTTCAAATGTGTTAATGATGTTAAGAAACACGCTAAACGGGTGCATATGAAGACTCCAGTGAAGACTGAAAATGAAGCTATGGCTCAAACAGACTCTCAAACTTCAGAAGATGTGGAAGCTAACAATTCAGGTCTGAGTTGTTCTAAATGTGGCAATGAGTTTGTGAATGAAACTGACCTACATTCTCATATTGAGAATTGTGGTGAGCTCCCAGCGCTGGCTTTTGTTAAAGTTGAAATTCAGGACGAGTAG
Protein Sequence: MKVEVNCEQDISGNPYQPPEHVFNIKNEDGNINLPYEESNNEENPKGSLEIVGKVYENGKINRLQCPQCDNTFKNRANLKQHLKFVHSSEDDIVECDKCYRTFKSIGHLRSHIHSVHAEEKEVSCEHCGKVFSNKKRLNNHIFYSHPEPEESVNCNVCNKSFKRRYNLKIHMRLVHPAEDRSVQCPHCDKKFKVDMLLQRHIKWSHPQDGMMYRCPECGRTLPSIACFRKHMQNVHSGSQDAICKICSKVFKTVKTLNRHEKNIHGGEKVEVKPHKVGDIPCSQCDKKFTTNTALFWHFERHHSENKRSNTCQICNKELSDQGSLKRHLEMVHSFDPVNCPICSKTFKSHMNLQRHIRVTHAPPEAAQKCDICDKTFKCSMHLRIHINAVHSTDGIFTCDICNKEFSSKKYMLKHKKTHVDVKLFPCAICNKMFKCVNDVKKHAKRVHMKTPVKTENEAMAQTDSQTSEDVEANNSGLSCSKCGNEFVNETDLHSHIENCGELPALAFVKVEIQDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00148678;
90% Identity: iTF_00871529; iTF_00872018;
80% Identity: iTF_00871529; iTF_00872018;