Lstr040255.1
Basic Information
- Insect
- Lathronympha strigana
- Gene Symbol
- -
- Assembly
- GCA_949128165.1
- Location
- OX421927.1:8253129-8254679[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.016 27 6.2 0.3 16 44 63 88 59 88 0.87 2 14 0.059 99 4.4 2.3 7 43 86 117 83 118 0.85 3 14 0.00049 0.83 11.0 5.4 6 43 112 146 109 147 0.82 4 14 3.2e-05 0.053 14.8 1.9 7 44 143 177 140 177 0.92 5 14 0.0075 13 7.2 0.4 11 42 177 205 175 207 0.72 6 14 0.0021 3.6 9.0 0.5 11 44 207 237 204 237 0.84 7 14 0.012 20 6.6 0.7 15 38 240 260 238 265 0.84 8 14 7.7 1.3e+04 -2.4 0.1 17 28 280 291 275 293 0.80 9 14 6.6e-06 0.011 17.0 2.7 3 44 296 334 294 334 0.89 10 14 0.011 18 6.8 2.1 17 43 338 361 337 362 0.91 11 14 0.72 1.2e+03 0.9 3.1 16 43 367 391 361 392 0.72 12 14 0.0082 14 7.1 2.3 10 29 390 409 382 420 0.79 13 14 6 1e+04 -2.1 3.2 18 28 426 436 409 449 0.66 14 14 0.69 1.2e+03 0.9 0.3 18 38 479 496 470 500 0.75
Sequence Information
- Coding Sequence
- ATGAAAGTGGAAGTTAATTGTGAACAGGATATCAGTGGTAACCCATACCAGCCTCCTGAACATGTGTTCAATATCAAGAATGAAGATGGAAACATAAATTTACCATATGAAGAATCAAACAATGAAGAAAATCCTAAAGGATCTCTTGAGATTGTCGGTAAAGTATATGAGAATGGCAAGATTAACAGGCTGCAATGCCCACAATGTgataatacttttaaaaatagagCTAACTTGAAGCAACACCTTAAATTTGTGCATTCGTCAGAAGATGATATAGTTGAATGTGACAAGTGTTACAGGACTTTCAAGTCCATCGGTCATTTACGTTCGCATATTCATTCCGTTCATGCTGAGGAAAAAGAGGTCAGTTGTGAACACTGTGGAAAAGTGTTTTCTAACAAAAAACGCCTTAAcaatcatatattttattcgCATCCAGAACCAGAGGAGAGTGTCAATTGTAATGTTTGCAACAAATCTTTTAAGCGTAGATATAACTTGAAAATACATATGAGGCTTGTCCATCCAGCAGAAGACAGATCCGTTCAGTGCCCACATTGTGACAAGAAGTTTAAAGTGGACATGCTGCTGCAGAGGCATATAAAATGGAGTCACCCGCAAGACGGAATGATGTACCGCTGCCCAGAATGTGGGAGGACCTTACCATCTATTGCTTGCTTCAGAAAACACATGCAGAATGTACATTCAGGCTCCCAGGATGCCATCTGCAAAATCTGCTCTAAAGTTTTCAAAACAGTCAAAACATTAAACAGACATGAGAAAAACATCCACGGTGGAGAGAAAGTTGAAGTGAAACCGCACAAAGTAGGAGACATACCGTGTTCACAGTGCGATAAAAAATTTACTACCAATACAGCCTTGTTTTGGCATTTCGAGAGACACCATTCCGAGAATAAAAGAAGCAACACTTGCCAAATCTGCAACAAAGAGCTGTCTGATCAAGGAAGCTTGAAGAGACATTTAGAGATGGTGCATTCGTTTGATCCTGTCAACTGTCCGATCTGCTCCAAGACTTTTAAAAGCCACATGAATTTACAAAGGCATATTAGAGTCACCCACGCTCCGCCCGAAGCGGCTCAAAAATGTGACATTTGTGACAAAACATTCAAATGTTCAATGCATTTACGGATACACATAAACGCTGTGCATTCTACAGATGGCATCTTCACCTGTGACATTTGCAATAAAGAATTTtcctcaaaaaaatatatgttgaaACATAAGAAGACACACGTTGATGTCAAACTGTTTCCATGTGCCATTTGCAATAAGATGTTCAAATGTGTTAATGATGTTAAGAAACACGCTAAACGGGTGCATATGAAGACTCCAGTGAAGACTGAAAATGAAGCTATGGCTCAAACAGACTCTCAAACTTCAGAAGATGTGGAAGCTAACAATTCAGGTCTGAGTTGTTCTAAATGTGGCAATGAGTTTGTGAATGAAACTGACCTACATTCTCATATTGAGAATTGTGGTGAGCTCCCAGCGCTGGCTTTTGTTAAAGTTGAAATTCAGGACGAGTAG
- Protein Sequence
- MKVEVNCEQDISGNPYQPPEHVFNIKNEDGNINLPYEESNNEENPKGSLEIVGKVYENGKINRLQCPQCDNTFKNRANLKQHLKFVHSSEDDIVECDKCYRTFKSIGHLRSHIHSVHAEEKEVSCEHCGKVFSNKKRLNNHIFYSHPEPEESVNCNVCNKSFKRRYNLKIHMRLVHPAEDRSVQCPHCDKKFKVDMLLQRHIKWSHPQDGMMYRCPECGRTLPSIACFRKHMQNVHSGSQDAICKICSKVFKTVKTLNRHEKNIHGGEKVEVKPHKVGDIPCSQCDKKFTTNTALFWHFERHHSENKRSNTCQICNKELSDQGSLKRHLEMVHSFDPVNCPICSKTFKSHMNLQRHIRVTHAPPEAAQKCDICDKTFKCSMHLRIHINAVHSTDGIFTCDICNKEFSSKKYMLKHKKTHVDVKLFPCAICNKMFKCVNDVKKHAKRVHMKTPVKTENEAMAQTDSQTSEDVEANNSGLSCSKCGNEFVNETDLHSHIENCGELPALAFVKVEIQDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148678;
- 90% Identity
- iTF_00871553;
- 80% Identity
- iTF_00871553;