Basic Information

Insect: Latheticus oryzae
Gene Symbol: Clamp
Assembly: GCA_030157265.1
Location: CM058057.1:6080453-6085125[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.5e-05 0.0011 19.3 2.9 1 23 103 125 103 125 0.98

2 8 8e-06 0.00059 20.1 0.4 1 23 162 185 162 185 0.93

3 8 7.1e-05 0.0052 17.1 3.0 1 23 325 347 325 347 0.97

4 8 4.2e-06 0.00031 21.0 0.2 1 23 353 375 353 375 0.98

5 8 1.2e-06 8.7e-05 22.7 1.5 1 23 381 403 381 403 0.99

6 8 4.7e-07 3.4e-05 24.0 1.2 1 23 409 431 409 431 0.98

7 8 1.2e-05 0.00087 19.6 3.3 1 23 437 459 437 459 0.98

8 8 9.8e-06 0.00072 19.8 0.6 1 23 465 487 465 487 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.5e-05	0.0011	19.3	2.9	1	23	103	125	103	125	0.98
2	8	8e-06	0.00059	20.1	0.4	1	23	162	185	162	185	0.93
3	8	7.1e-05	0.0052	17.1	3.0	1	23	325	347	325	347	0.97
4	8	4.2e-06	0.00031	21.0	0.2	1	23	353	375	353	375	0.98
5	8	1.2e-06	8.7e-05	22.7	1.5	1	23	381	403	381	403	0.99
6	8	4.7e-07	3.4e-05	24.0	1.2	1	23	409	431	409	431	0.98
7	8	1.2e-05	0.00087	19.6	3.3	1	23	437	459	437	459	0.98
8	8	9.8e-06	0.00072	19.8	0.6	1	23	465	487	465	487	0.98

Sequence Information

Coding Sequence: ATGTTCGACCCTAACGCTATAACGACTCAACAGTCGCAAATTCAATaccaacaacaacaacaacaacaaccaACTGATAAAGATAAGAATCAAGATGGTACTCAAAAGGATACTTTCCCATCGTTCTGTTATGCCAATGTTAACATGATCCATAAAATAACCCCGAATACAACTCAAACTCACAATTCTACTGTTAATATGTCACAATTATCCGACGATAAATGTTACATAACCCAACCATTTAGTTACAACTACGCTTTAGTCAACCAGATGTCGCTGACTCAAAACACCATATCCAATATCACATTCAAATGTGATGTCTGTGGACTAATGTTCGCTCATTTATCTCTTCTGAATCACCATAAGCGCTTGCATCAAGGGCAAGGTGATCAAAATCAACCGCAACAACAACAAATCACAGTCCAAGTACAACAACCACAACAGCCAACACAGATTCAAATTGTTTCGGCAGATCGAATAAGATATCCTTGTGAAGAATGTGGTTTGACTTTTAACACTCAAACTGATCTTAAATCGCACAAGATACAATCACATCAGCCACAACAACAACAGCAACAGCAACAAGTTACAACACAATCGCAACCACAACAAAATACtcttaaaatcaaaaattgcgAGTCTTGTGGAGCTCCTCTACCGCAAGATAATAACAAGAAGAGAGCTGTTATGAAAGTTAAATGCGAAAATTGTCTTTCAGCTGAGGCTATACAGCCGCAGATTTTTGTTGTAGCAACTGCTTCCGACTCGACTGCTGTTAAGTTCGAAGAATCGACGGGAACGCAAACGCAGACTAATTTAGGTACTCAAAATTCAATCCCAATAGGTGTGAAAAACAACCATCCTGTGAAACGCCGAGGTGTCGCTAGTGTCACCAAATGTACCAAATGTAACGGCAGCGGAATAATCTTCATCGGTGgttcaaaaaatcaacaaaacaaCGTCGATAAACCATTCCATTGTAACATTTGCAATGGTTCCTTCAGTCGCTACTCTTCCTTATGGTCACACAAACGTCTCCACACTGgcgaaaaaaatttcaaatgtaatATATGCGGTTTAGCTTTTGCTAAAGCtgcatatttaaaaaatcattctcGAATTCATACTGGCGAAAAACCATACAGATGCAATGTATGTGGAATGCAATTTTCACAATCTccacatttgaaaaatcatgAACGGATTCATTCCGGTGAAAGGCCATATGTTTGTGAAGTTTGTGAAAAATCGTTTGCTAGACATTCGACTTTATGGAATCATCGACGAATTCATACTGGGGAAAAACCATACAGATGCGATATTTGTGGATCGTGCTTTAATCAAGCCACACATCTTAAGAATCATGCGAAAGTGCATTCAGGCGAAAAACCATTCAAGTGTGATATTTGTTCCGTCGGCTTCTCAGATagatttgcGTTAAAAAGACACAGAAACATCCACGAAAAGTACGGCCGAACTAAACCGAATCCTCCTCCAGCTTCCACGACTGAGGAGACTCAAACCAATAATACAACAACTGATTCAACAAACAACACGACGACAGTAACAACAGTAGCTACAACGACTCAAGAATCAAATGATCATGAAGAACttttagaaacaaaatatgaagaaaaatttgttcCAAGTGATGAAATAACGGAAGAAATGACAGATATTTCCGAACTCCAAGTACAGTTATCTTAA
Protein Sequence: MFDPNAITTQQSQIQYQQQQQQQPTDKDKNQDGTQKDTFPSFCYANVNMIHKITPNTTQTHNSTVNMSQLSDDKCYITQPFSYNYALVNQMSLTQNTISNITFKCDVCGLMFAHLSLLNHHKRLHQGQGDQNQPQQQQITVQVQQPQQPTQIQIVSADRIRYPCEECGLTFNTQTDLKSHKIQSHQPQQQQQQQQVTTQSQPQQNTLKIKNCESCGAPLPQDNNKKRAVMKVKCENCLSAEAIQPQIFVVATASDSTAVKFEESTGTQTQTNLGTQNSIPIGVKNNHPVKRRGVASVTKCTKCNGSGIIFIGGSKNQQNNVDKPFHCNICNGSFSRYSSLWSHKRLHTGEKNFKCNICGLAFAKAAYLKNHSRIHTGEKPYRCNVCGMQFSQSPHLKNHERIHSGERPYVCEVCEKSFARHSTLWNHRRIHTGEKPYRCDICGSCFNQATHLKNHAKVHSGEKPFKCDICSVGFSDRFALKRHRNIHEKYGRTKPNPPPASTTEETQTNNTTTDSTNNTTTVTTVATTTQESNDHEELLETKYEEKFVPSDEITEEMTDISELQVQLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310805;
90% Identity: iTF_01410213; iTF_01480345; iTF_01311754; iTF_01366540; iTF_00987334; iTF_00842103; iTF_01566463; iTF_00639757; iTF_01278413; iTF_00753230; iTF_01481140; iTF_00415349; iTF_01568283; iTF_01330044; iTF_01283667;
80% Identity: -