Basic Information

Insect: Eledona agricola
Gene Symbol: Clamp
Assembly: GCA_964023215.1
Location: OZ026863.1:17469562-17471409[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6.1e-06 0.00055 20.6 2.6 1 23 100 122 100 122 0.99

2 8 8.6e-06 0.00078 20.1 0.4 1 23 162 185 162 185 0.93

3 8 7.5e-05 0.0068 17.1 3.0 1 23 324 346 324 346 0.97

4 8 4.4e-06 0.0004 21.0 0.2 1 23 352 374 352 374 0.98

5 8 1.3e-06 0.00011 22.7 1.5 1 23 380 402 380 402 0.99

6 8 4.9e-07 4.5e-05 24.0 1.2 1 23 408 430 408 430 0.98

7 8 1.2e-05 0.0011 19.6 3.3 1 23 436 458 436 458 0.98

8 8 1e-05 0.00094 19.8 0.6 1 23 464 486 464 486 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6.1e-06	0.00055	20.6	2.6	1	23	100	122	100	122	0.99
2	8	8.6e-06	0.00078	20.1	0.4	1	23	162	185	162	185	0.93
3	8	7.5e-05	0.0068	17.1	3.0	1	23	324	346	324	346	0.97
4	8	4.4e-06	0.0004	21.0	0.2	1	23	352	374	352	374	0.98
5	8	1.3e-06	0.00011	22.7	1.5	1	23	380	402	380	402	0.99
6	8	4.9e-07	4.5e-05	24.0	1.2	1	23	408	430	408	430	0.98
7	8	1.2e-05	0.0011	19.6	3.3	1	23	436	458	436	458	0.98
8	8	1e-05	0.00094	19.8	0.6	1	23	464	486	464	486	0.98

Sequence Information

Coding Sequence: ATGTTCGATCCAAACGCCATAACGACTCAACAGTCGCAGATCCAATACCAGCAGCAGCAACCGACCGACAAGGACAAGAACCAGGACGGCACCCAGAAGGACACATTCCCGTCCTTCTGCTACGCCAACGTCAACATGATCCACAAGATCGCCCCCAACACCACTCAGACCCACAACTCCACCGTCAACATGTCCCAACTCTCCGACGACAAATGCTACATAACGCAGCCCTTCAGCTACAACTACGCCCTCGTCAACCAGATGTCCCTCACCCAGAACACCATCTCTAACATTAGCTTCAAATGCGACGTCTGCGGCCTCATGTTCGCCCATCTCAGCCTCCTCAATCACCACAAGCGCGTCCATCAAGGTCCGGGTGACCAAAACCAGCCACAACAGCAACAACAGCAGCAGATCACCGTGCAAGTCCAGCAACCCCAACAACCCACCCAAATCCAGATCGTGTCCGCCGACAGAATAAGGTATCCGTGCGAGGAGTGCGGCCTCACTTTCAACACCCAAACCGATCTCAAGTCGCACAAGATCCAGACGCACCAGCCCCAGCAGCAGGTCGCCGCCCAACCTCAACCCCAACAGCAGCAGCAGAACACCCTGAAGATTAAGAATTGCGAGTCGTGCGGCGCCCCCCTGCCCCAGGACAACAACAAGAAGAGGGCTGTGATGAAGGTGAAGTGCGAGAACTGTCTGTCGGCGGAGGCGATCCAGCCGCAGATCTTCGTCGTGGCCACGGCGTCCGACTCCACCTCCGTCAAGTTCGAGGAGTCCACCACCGGGACCCAGACTCCGTCCACCTTAGGAACCCAAAACTCGATTCCGATCGGAGTGAAAAACAATCACCCGGTGAAGCGACGCGGCATCGCCAGCGTCACCAAGTGCACGAAATGCAACGGCAGCGGCATCATCTTCATAGGCGGCTCCAAGAACCAGCAGAACAACGTCGACAAACCCTTCCACTGCAACATCTGCAACGGCTCCTTCAGCAGGTACTCGTCGCTTTGGTCGCACAAGCGCCTCCACACCGGCGAGAAGAACTTCAAGTGCAACATCTGCGGCCTGGCGTTCGCCAAAGCCGCCTATTTGAAGAACCACTCGCGAATCCACACCGGGGAAAAGCCCTACAGATGCAACGTTTGCGGGATGCAGTTCTCGCAGTCGCCCCACTTGAAAAACCACGAACGAATCCACTCGGGGGAGCGGCCCTACGTGTGCGAGGTGTGCGAGAAGTCGTTCGCGCGCCACTCCACCTTGTGGAACCACCGGAGGATCCACACCGGAGAAAAACCGTACAGATGCGACATCTGCGGGTCGTGCTTCAACCAAGCCACGCACCTCAAGAACCACGCCAAGGTGCATTCGGGAGAGAAGCCGTTCAAGTGCGACATTTGCTCCGTGGGATTCTCCGATAGGTTTGCGTTGAAGCGGCACAGAAATATCCACGAGAAGTACGGGCGAACCAAGCCGAATCCGCCCCCGGCGTCCACCACCGACGACACCCAAACTAATAACACCATCGCTGATTCGGCGGCCTCGACAACGATAGTGGCCCAGGAGGCGACCGATCACGAAGAGCTGCTCGAAGCAAAATACGAAGAGAAATACGTCCCCACTGATGAGATTACCGAGGAGATGACCGACATTTCAGAGCTGCAAGTCCAGCTGTCCTAA
Protein Sequence: MFDPNAITTQQSQIQYQQQQPTDKDKNQDGTQKDTFPSFCYANVNMIHKIAPNTTQTHNSTVNMSQLSDDKCYITQPFSYNYALVNQMSLTQNTISNISFKCDVCGLMFAHLSLLNHHKRVHQGPGDQNQPQQQQQQQITVQVQQPQQPTQIQIVSADRIRYPCEECGLTFNTQTDLKSHKIQTHQPQQQVAAQPQPQQQQQNTLKIKNCESCGAPLPQDNNKKRAVMKVKCENCLSAEAIQPQIFVVATASDSTSVKFEESTTGTQTPSTLGTQNSIPIGVKNNHPVKRRGIASVTKCTKCNGSGIIFIGGSKNQQNNVDKPFHCNICNGSFSRYSSLWSHKRLHTGEKNFKCNICGLAFAKAAYLKNHSRIHTGEKPYRCNVCGMQFSQSPHLKNHERIHSGERPYVCEVCEKSFARHSTLWNHRRIHTGEKPYRCDICGSCFNQATHLKNHAKVHSGEKPFKCDICSVGFSDRFALKRHRNIHEKYGRTKPNPPPASTTDDTQTNNTIADSAASTTIVAQEATDHEELLEAKYEEKYVPTDEITEEMTDISELQVQLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310805;
90% Identity: iTF_00870801;
80% Identity: -