Basic Information

Insect: Stenodera caucasica
Gene Symbol: Clamp
Assembly: GCA_037414795.1
Location: JAZBGZ010000865.1:14312-16770[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6e-06 0.00036 20.5 2.6 1 23 123 145 123 145 0.99

2 8 3.1e-05 0.0018 18.3 0.2 1 23 184 207 184 207 0.93

3 8 7.7e-05 0.0046 17.0 3.0 1 23 346 368 346 368 0.97

4 8 4.6e-06 0.00027 20.9 0.2 1 23 374 396 374 396 0.98

5 8 1.3e-06 7.7e-05 22.6 1.5 1 23 402 424 402 424 0.99

6 8 5.1e-07 3e-05 23.9 1.2 1 23 430 452 430 452 0.98

7 8 1.3e-05 0.00077 19.5 3.3 1 23 458 480 458 480 0.98

8 8 1.1e-05 0.00063 19.8 0.6 1 23 486 508 486 508 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6e-06	0.00036	20.5	2.6	1	23	123	145	123	145	0.99
2	8	3.1e-05	0.0018	18.3	0.2	1	23	184	207	184	207	0.93
3	8	7.7e-05	0.0046	17.0	3.0	1	23	346	368	346	368	0.97
4	8	4.6e-06	0.00027	20.9	0.2	1	23	374	396	374	396	0.98
5	8	1.3e-06	7.7e-05	22.6	1.5	1	23	402	424	402	424	0.99
6	8	5.1e-07	3e-05	23.9	1.2	1	23	430	452	430	452	0.98
7	8	1.3e-05	0.00077	19.5	3.3	1	23	458	480	458	480	0.98
8	8	1.1e-05	0.00063	19.8	0.6	1	23	486	508	486	508	0.98

Sequence Information

Coding Sequence: atgtttgaTCCGAATGCtataacaacacaacaatcGCAGATACAATATCAGCaacctcaacaacaacaacaacaacagcagcagcaacaacagcagcaacaacagcaacaacagcagcagcaacaacaaaatgataaagATAAGAATCAAGATGGTACACAAAAAGATACATTTCCGTCATTTTGTTATGCCAATGTTAATATGATACATAAAATAACACcaaatacaacaacacaaacacaTAATTCAACTGTTAATATGTCACAATTATCAGATGATAAATGTTATATAACACAACCATTTAGTTATAATTATGCATTAGTTAATCAAATGTCATTAACACAAAAtacaatatcaaatataacattTAAATGTGAAGTATGTGGATTGATGTTTGcacatttatcattattaaatcatCATAAACGTGTACATCAAGGacaaaatgatcaaaatcaaccacaacaacaacaacaacaaatcaccGTACAGgtacaacaacaacaacaaccggcTCAAATTCAGATAGTATCAGCTGATCGGATACGTTATCCTTGTGATGAATGTGGTTTAGCTTTTAATACACAAAGTGATATGAAATCACATAAAATACAATCACAtcctcaacaacaacaacaacagcaacaagtaacaacacaacaacaacaacaacaaaatactttgaaaataaaaaattgtgaatcatGTGGTGCTCCATTACcacaagataataataaaaaacgtgCTGTTATGAAAGTtaaatgtgaaaattgtttATCAGCTGAAGCAATACAACcgcaaatatttgttgttgcaACAGCATCAGATGCTACTGGtgttaaatttgaagaatcaACAGGTACACAAACAACTTCTAATTTAGGTACTCAAAATTCGATACCTATTGgtgttaaaaataatcatccTGTTAAACGTCGTGGTGTTGCTAGTGTAACAAAATGTACAAAATGTAATGGTAGCGgtataatatttattggtggtgcaaaaaatcaacaaaacaacgtCGATAAACCATTCCATTGTAATATATGTAATGGTTCATTTAGTCGTTATTCATCATTATGGTCACATAAACGTTTACATACCGGTGAAAAGAATTTCAAATGTAATATATGCGGTTTAGCATTTGCTAAAGCGGcatatttaaaaaatcattcacgTATCCATACTGGTGAAAAACCATACCGTTGTAATGTTTGTGGTATGCAATTTTCACAATCACCACATTTAAAAAATCACGAACGTATACATAGCGGTGAACGTCCATATGTTTGTGAAGTATGTGAAAAATCATTTGCACGACATTCAACATTATGGAATCATCGACGTATACATACCGGTGAGAAACCATACCGTTGTGATATATGCGGATCATGTTTCAATCAAGCTACACATCTAAAAAATCATGCTAAAGTCCATTCTGGAGAAAAACCGTTCAAATGCGATATTTGTTCAGTTGGATTTTCAGACAGatttGCATTGAAACGACATCGGAATATCCATGAAAAATATGGACGTACTAAACCGAATCCACCACAAAATACCCAACCACAACAAGaagaacaacaaacaaatcaacaacaacaagatcaaacaaataatacaaatgtaACAACAGTTGCTACAACAACACAAGATTCAAATGATCATgaagatttaattgaaacgaaATATGAAGAGAAATTTGTACCAAGTGATGAAATAACAGAAGAAATGACCGATATATCTGAATTACAAGTACagttatcataa
Protein Sequence: MFDPNAITTQQSQIQYQQPQQQQQQQQQQQQQQQQQQQQQQQQNDKDKNQDGTQKDTFPSFCYANVNMIHKITPNTTTQTHNSTVNMSQLSDDKCYITQPFSYNYALVNQMSLTQNTISNITFKCEVCGLMFAHLSLLNHHKRVHQGQNDQNQPQQQQQQITVQVQQQQQPAQIQIVSADRIRYPCDECGLAFNTQSDMKSHKIQSHPQQQQQQQQVTTQQQQQQNTLKIKNCESCGAPLPQDNNKKRAVMKVKCENCLSAEAIQPQIFVVATASDATGVKFEESTGTQTTSNLGTQNSIPIGVKNNHPVKRRGVASVTKCTKCNGSGIIFIGGAKNQQNNVDKPFHCNICNGSFSRYSSLWSHKRLHTGEKNFKCNICGLAFAKAAYLKNHSRIHTGEKPYRCNVCGMQFSQSPHLKNHERIHSGERPYVCEVCEKSFARHSTLWNHRRIHTGEKPYRCDICGSCFNQATHLKNHAKVHSGEKPFKCDICSVGFSDRFALKRHRNIHEKYGRTKPNPPQNTQPQQEEQQTNQQQQDQTNNTNVTTVATTTQDSNDHEDLIETKYEEKFVPSDEITEEMTDISELQVQLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01310805;
90% Identity: iTF_00870801;
80% Identity: -