Lory007829.1
Basic Information
- Insect
- Latheticus oryzae
- Gene Symbol
- bab2
- Assembly
- GCA_030157265.1
- Location
- CM058052.1:8527261-8529056[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.7e-16 5e-13 48.5 0.1 2 45 360 403 359 403 0.96 2 2 0.24 1.8e+02 1.9 0.2 6 18 472 485 470 487 0.81
Sequence Information
- Coding Sequence
- ATGTGTGCAGCTCAACAATACTGTCTTCGGTGGAACAACCACCGTTCTAATTTATTGACAGTTTTTGACGAACTACTTCAAAATGAAGCTTTCACTGATGTAACTCTCGCTTGTGAAGGTGGTAATCCGATAAAATGCCATCGAATGGTTTTGGCCGCCTGTTCTCCATATTTTCAGAATCTTTTTACTGATTTACCATGTAAACACCCGGTGGTGGTGCTCAAAGATGTTAAATACAGCGAGATTAAAGCTATTTTGGAATATATGTATAGAGGTGAAGTTAATGTCGCTCAAGATCAACTTGCCGCATTGCTCAAAGTAGCAGAAGCTTTAAAAGTAAAAGGATTGGTTGAAGAAAACCGATCTAGCGGTTTTCCAAATAATCGAGAAGATGAACCTATGGACCACTCACCGAGTGGAAACAGCAATTCGAATTCTAGTGTCCAGAATGTTCACAGCAGTAGTAATAATTCACCACCTCATTCAACTAACAGTCATTATAAGAACCCGTACAGTATGTACGGTGGTAAATCTGGGAATTTAGACAGAAATTCTCGTATGAATTTGCCTATTTGGGCGGTTCATGGCTTGCCTATTCCGTCTCACTCCAATGCCGTTCCTAATCAAAACCATCCTCATGCTGCTGCCACTGCAGCTGCCGCTATGCTGAGTAGTTGCTACGAAACCGCCACTGATATGTCGCctttaagaagaaaaaaactgtcaaGTCTTCTAATGAATCGAGACACTCCTATTTTGAGAACAGTTCTGGGACAAGGTCAAGCCGATTCATCTCAACCTGTAAGCTTAGTGTGTCATCCGGATAGTCATGATCAACAATCGAACGGACCCGATCAAGAGCGAATGGAAAAGcacaTGAAAAATGAGCCTTCCGAAGATGCCCAGTCTCCATACACTGACTTCACAATGATGAACGATGAAGAAGAGAAGTCCAAATTAGCGGTTCCATCGTCTTCGCCCCAATCCTATACTAGTGAAACGCGTGCAGTATCATCAGGTATTGCCCCTTATGTCCCAGCACAAAGACCTGAATGGAAGCGCTACAAGCAGTACAGTCGAGAGGAGATCCTTTCAGCAATTGAAGCGGTAAGAAATGGCATGTCTGCTCTTCAAGCTGCTCGAAAATACGGAGTTCCTTCGAGGACTCTTTACGATAAAGTAAAGAAGTTAGGAATAACGACTAGTAGGCCCTTCAAAAGAGGTTCTAACGGGAGTCAGGCGTGTTTTCCTTACGGTTTAAGCGGCACTGGGTCCCCTTACGGGGGACATATGTCGGAAAATGATGATCTTCCGACTAACAACAACACTTCTTTGTTGGAGGCGACTTTTTTGCAGCATGCGTTCGAGGGACGTGGAGGAGAAGACCGAGAAGCATTGGCGGCAATGGCAGTAGCAGCTGCTGCCCACGCCGTAGTATCTGGTCACTCCACGAGTCCCTCCAATCCGGGCCACGCTACTAGCCCAAGTCCTAGCCCCACCTTGATGAAGTACATGCGTCAAAATAGCATGACTCCTTCGCCTGCTCCAGAAACTAATGGTAGCTCTGAAAGAGATCGCGATGAAGAAGATGATCAAGTAGAAGATCTTTCTGTTGGCCGGAAACAAGAATCCCGCGTAATAATGCCTCCTATGAATCAGGTGTCGACAATAATGAAGAAGGAGGAGTTGTTGAAAGACATCATCAAGGAGGAGGCGAGGAGGGAGATAAGCGTGGAGGAGGCGGAATAG
- Protein Sequence
- MCAAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACEGGNPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYSEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSSGFPNNREDEPMDHSPSGNSNSNSSVQNVHSSSNNSPPHSTNSHYKNPYSMYGGKSGNLDRNSRMNLPIWAVHGLPIPSHSNAVPNQNHPHAAATAAAAMLSSCYETATDMSPLRRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDSHDQQSNGPDQERMEKHMKNEPSEDAQSPYTDFTMMNDEEEKSKLAVPSSSPQSYTSETRAVSSGIAPYVPAQRPEWKRYKQYSREEILSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSQACFPYGLSGTGSPYGGHMSENDDLPTNNNTSLLEATFLQHAFEGRGGEDREALAAMAVAAAAHAVVSGHSTSPSNPGHATSPSPSPTLMKYMRQNSMTPSPAPETNGSSERDRDEEDDQVEDLSVGRKQESRVIMPPMNQVSTIMKKEELLKDIIKEEARREISVEEAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01277622;
- 90% Identity
- iTF_01409879;
- 80% Identity
- iTF_00870676;