Basic Information

Insect: Lasius niger
Gene Symbol: ZNF236
Assembly: GCA_001045655.1
Location: LBMM01000586.1:27037-45168[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.00014 0.015 15.7 2.3 2 23 197 218 196 218 0.96

2 27 0.0001 0.011 16.2 0.6 1 23 224 246 224 246 0.98

3 27 2.5e-05 0.0027 18.1 0.3 2 23 252 273 252 273 0.97

4 27 0.0058 0.63 10.6 0.2 3 23 281 301 279 301 0.96

5 27 0.00015 0.016 15.6 1.0 2 23 314 335 314 335 0.98

6 27 2.2e-06 0.00024 21.4 1.1 1 23 356 378 356 378 0.99

7 27 1.6e-05 0.0017 18.7 0.3 1 19 384 402 384 403 0.97

8 27 1.1e-05 0.0011 19.3 1.2 1 23 412 435 412 435 0.96

9 27 0.0031 0.33 11.5 1.9 1 23 444 467 444 467 0.97

10 27 3.4e-07 3.6e-05 24.0 0.4 1 23 590 612 590 612 0.98

11 27 0.00048 0.052 14.0 0.8 1 23 618 640 618 640 0.99

12 27 0.061 6.5 7.4 4.5 1 23 646 668 646 668 0.97

13 27 0.029 3.2 8.4 4.1 1 21 672 692 672 694 0.94

14 27 0.0016 0.17 12.4 5.8 1 23 749 771 749 771 0.98

15 27 2.8e-05 0.003 17.9 4.9 1 23 777 799 777 799 0.99

16 27 8.2e-06 0.00088 19.6 2.1 1 23 805 827 805 827 0.98

17 27 0.00062 0.067 13.7 8.1 1 23 833 855 833 855 0.98

18 27 0.058 6.2 7.5 1.4 2 23 1213 1234 1212 1234 0.97

19 27 4.2e-06 0.00045 20.5 0.6 1 23 1240 1263 1240 1263 0.98

20 27 0.0014 0.16 12.5 2.6 2 23 1268 1289 1267 1289 0.96

21 27 2.5e-08 2.7e-06 27.5 1.4 2 23 1360 1381 1359 1381 0.98

22 27 7.8e-05 0.0084 16.5 5.0 1 23 1387 1409 1387 1409 0.99

23 27 9.9e-05 0.011 16.2 4.1 1 23 1415 1437 1415 1437 0.97

24 27 3.7e-05 0.0039 17.6 3.5 1 23 1443 1465 1443 1465 0.99

25 27 2.2e-06 0.00024 21.4 0.8 2 23 1717 1738 1716 1738 0.97

26 27 5.6e-06 0.0006 20.1 4.2 1 23 1744 1766 1744 1766 0.98

27 27 5.3e-05 0.0057 17.1 7.6 1 23 1772 1795 1772 1795 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.00014	0.015	15.7	2.3	2	23	197	218	196	218	0.96
2	27	0.0001	0.011	16.2	0.6	1	23	224	246	224	246	0.98
3	27	2.5e-05	0.0027	18.1	0.3	2	23	252	273	252	273	0.97
4	27	0.0058	0.63	10.6	0.2	3	23	281	301	279	301	0.96
5	27	0.00015	0.016	15.6	1.0	2	23	314	335	314	335	0.98
6	27	2.2e-06	0.00024	21.4	1.1	1	23	356	378	356	378	0.99
7	27	1.6e-05	0.0017	18.7	0.3	1	19	384	402	384	403	0.97
8	27	1.1e-05	0.0011	19.3	1.2	1	23	412	435	412	435	0.96
9	27	0.0031	0.33	11.5	1.9	1	23	444	467	444	467	0.97
10	27	3.4e-07	3.6e-05	24.0	0.4	1	23	590	612	590	612	0.98
11	27	0.00048	0.052	14.0	0.8	1	23	618	640	618	640	0.99
12	27	0.061	6.5	7.4	4.5	1	23	646	668	646	668	0.97
13	27	0.029	3.2	8.4	4.1	1	21	672	692	672	694	0.94
14	27	0.0016	0.17	12.4	5.8	1	23	749	771	749	771	0.98
15	27	2.8e-05	0.003	17.9	4.9	1	23	777	799	777	799	0.99
16	27	8.2e-06	0.00088	19.6	2.1	1	23	805	827	805	827	0.98
17	27	0.00062	0.067	13.7	8.1	1	23	833	855	833	855	0.98
18	27	0.058	6.2	7.5	1.4	2	23	1213	1234	1212	1234	0.97
19	27	4.2e-06	0.00045	20.5	0.6	1	23	1240	1263	1240	1263	0.98
20	27	0.0014	0.16	12.5	2.6	2	23	1268	1289	1267	1289	0.96
21	27	2.5e-08	2.7e-06	27.5	1.4	2	23	1360	1381	1359	1381	0.98
22	27	7.8e-05	0.0084	16.5	5.0	1	23	1387	1409	1387	1409	0.99
23	27	9.9e-05	0.011	16.2	4.1	1	23	1415	1437	1415	1437	0.97
24	27	3.7e-05	0.0039	17.6	3.5	1	23	1443	1465	1443	1465	0.99
25	27	2.2e-06	0.00024	21.4	0.8	2	23	1717	1738	1716	1738	0.97
26	27	5.6e-06	0.0006	20.1	4.2	1	23	1744	1766	1744	1766	0.98
27	27	5.3e-05	0.0057	17.1	7.6	1	23	1772	1795	1772	1795	0.97

Sequence Information

Coding Sequence: ATGTCCGCCAACATGTTGACAGAACAGAACGTAATTATGGAATTCACTGACTCTAGCAATACAGTACCGATTGGTTTTATAACTACGGATGATGGTCATACGCTTTTTGCAGTGGGTGaacatGAGGATGGCACGTTGGAAATCATGGCGACCCCTATTACGTTAATGCCACAAAATAACATAGTGTCTTCAGCGTTGATAAAAACTGTggatggaaattttattttgcatcctttttatataataaacatttttctgtttcagcctatttttcaattaaatgtgGAAGGTCCACCAGGAACTGTGATGCAACAAGCAAACCTACTTCCAATACAACAAAATGGATCTGCGATTATGGAGCAACTAAAAATAGTacagaatataaatgaatgtGCAATTACAGAATCCTTGTTATCTGTTAGAGACGATagcaatgtattattaaataaagaagaaaattgtaGAAGGCAGACAGAAAAACAGGCAACAATTGACAatcatgttaaaaataaatctatgtCTGTATCTACATCTGTACATAAAAAGTCTCCAGGCAGACCGAAAAAGACTGAGACTACACAATCTTTGAAGTGTGACATATGTGGGCAAGAATTTACTAAACATACATTATATCGCAGACATATGGAAAACCATGCCGAAGAAAAACCACACAGATGTCCAAAATGCCCAGCATCTTTTAATATTCCAACAAATTTCACGCTTCATATGGCAACGCATAACATCGGCGACCCGAAATGCCCCGAATGTGGTAGGAAATACGCCAGAATGGCGAGTCTCAAATCTCATATGCTGCTGCACGAGAAGGAGGAGAATCTCTTCTGCACGGAGTGCGAGGACGCCTTTTCAACGAAGgcCCAACTGGACGCGCATTTGAAGCTTCACGGAGAAAAGTGGGCGAATGAGGATGTTGGCGTACGAAAGTGTAAATTATGCAGCAAGCAATTCACGCAACCCGCACTCTACAGAATGCACATACGCGAACATTATAGGCTACAGACGAAGATAGTAAAGCAAACTAAGAGGGGAACGAAACATAAAACAATGTACAAATGTACCATATGCTTGAAGAATTTTCAAAAGCCGAGCCAGCTAATGCGACATATCAGAGTGCACACCGGAGAGAAACCCTTTAAATGTACCGTTTGCAACAGGGCATTCACGCAAAAGAGTTCGCTACAAATCCACGCGTGGCAACACAACGGTATCCGGCCGCACACCTGCAGCCTCTGCAACGCCAAGTTTAGTCAGAAAGGAAATCTAAAGGCGCATATACTCAGAGTACACAATGCGCCGGAAGGTGAGCCGACGTACGCCTGTTCTTATTGCTCCTGCATCTTCAAGAAGCTGGGCAGCTTAAACGGCCACATAAAACGAATGCATTCTAATCCGGAGGAGGAATCCGCCGAGAAATCCTCGGCAGTTAATTCCAGTATCTCCTCGGAAGCTGACATGCGCGCGACAGTCGATAGCGTTATATCGCAGTTGGCGTCTTTGGAAGCCGTTGTAAATAATACTGCAGATTCTACGGGGACCGCAACGTTGAATGCAGAGCAGAACGATATCCTGCAACAGGCGTTGAAAAATAGCGGTCTGCCGAACAAAAACGAAGTCCCTTCGAAAGAAATCGCAGAACCGAAAAAGACGGATTCGCCAACGACGTATGTCACATTGTTGGACAAGACTGCTGGCAGTACTTCGAGCAAGTATCACGCCATAAAGCAACGCTGCATAGGGAACGTACGGTGGTACGTATGCTCGTTCTGCCCGAAAGAATTCAAAAAGCCGTCGGACTTGATACGTCACTTGCGTGTACACACGCAGGAAAAGCCCTTCAAGTGTATGTATTGCGTACGTTCTTTCGCGTTAAAGTCAACAATGATAGCGCACGAGCGGACTCACACCGGAGTGAAGAAATACGCTTGCGCCTCCTGCAACAAAACTTTCGCGTGCCATAGTAGTCTTACCTCTCACACAAGATTACACATGAAACCGCACAAATGCAATATATGCGGCAAGTTATTCAATTCGAACATCATCCTGAAAAATCATATGAAGTGTCACATGCGGGAGAAACCCAAGATATCGCCGGAAGCAGAGAGCCTGGTGCCACAAGTGGTACTGCAGGAGCCACTTGTCATAAGTGATGCCGGTAACAAGATCAGTGTTGCTCAAGTGCAATCGAAACAAAAGCAATTATACGAAAACTCCGGCGTGACCAGGCCGCACGAGTGTTGGGTCTGTCACGCGGCATTCAGGAAAGTCAGCCATTTGAAGCAACATTATCGCAGACATACGGGCGAGCGTCCTTACAAGTGCTCCAAATGCGATAgGAGATTTACATCGAATAGTGTCTTAAAATCTCACCTGCACACGCACGACGACGCGAGACCGTACAGTTGCTCCGTATGCAACACAAAATTCTCCACGCAAAGCAGCATGAAGAGGCATTTGGTCACGCATAGCAATAAAAGGCCATATATGTGTCCATATTGTCACAAGACGTTTAAGACGTACGTCAATTGTCggaaacatataaaaagacACAAGCACGAACTGGTGCAACggCAATTGGAGGAACAAAAGACGCAAGAGCAGAAAGAACAACAGCCTTTGAGAGAGAACAAAGAAGCTGGCTCGGCAGCCTTACCGGCAAGCATCACTCTTGGCGAAGATATGGAAGTGTCGTTTCAACCCCAAATGGCGCCAGATTTCACGCAGGCCTTTTCCGATCAGTTTCAAAATATCAGTGCAGAGAAGGAAAAGTCCTTATTGACGAACAGCGCGACGACGTCAGTAGCAAACCgaaATTTACCTGTTGACACAGCTAATTTAGGAACTTCGCAAACTTTACACGCCGATGAAACTGGTACCATCACGTTATCTCATTACTCTGGAGATCAAACCCTCACAGCGGAAAGCATACGAGAGATCGAGGAGACATTGAATCAACAACTGTTTAATATCGGCATGAATCTCGGGCTGGCGAGCAATCTACCGAGGCAGATGGACGAGACGAATACGAATTCCCTCGACAATTCCAGGGAACAGCCGGTGctcaatataatttacgagCATAACAAAAATCTGGATTCGTCCGGCAATGCCATATTCACGTCGCAATTCGATTCATTTGACATGAGCCAGATTACGTTACAGACGGATAGCGAGATGGACATCGGTTTGAATCCGAGCAACACGGCGAGCATGTCCGGTATTTTACCCAGATCTGTGGAAGGGAACAACAGACAGCAAGAAGAACAACGAGCTATTCCAGTTACTACAATTGATAATATAGACACCTCTGCAATTACGAAGAACGCTCATCTGATGGTAATAAATCCTAAGGATAATTGTTCGGAATTGGTGAGGCTTTCGCAAGTATGCCCGTCGAAGTACTCGAAGGCCATCGCGAAACCGGACACCGCAAACGGATTGATCGAGGTGCAAGGCGCGACTGAACATGAAAAAGCGCCAcagaaaagtaatattatatcatgcgagagcgagagaaattcTTTATTCATGAAGAACTTTCAAAGTACAATACAACCGGAGACGTTCGTTTCTTCCGGAACGAATAATTCGGCCAAAATATCGGAGTACAATAATCTGTTGGAGTGCCACATATGCCGTCGTAATGGTTTCACGGCAGAGAGATTGaagGAACATTTGAGATCTCATTGCGGTGCCAAAACGTACGAATGTCCGGAGTGTTCCCAGCGATTCTATACGAATGGCGGTCTCAGCAGGCACATGAAGAGATTGCATACGGAGCTGTTGAAATGTACGACTTGTAAGAAGGTGCTGGACAACAAgtcgcaattaaaatatcataacaAGATGCATAGCGGGGTTTGGAAAGTTATGCGCGTGGGATCGAACGAGAAGGATGTGATCTCCAGTTCTCGCCTTTCGTCGATAACGACGCTAGACATCCGAGCGAATCCGGACTCGTCGGTATCTGAGAAGGTATTGATGGACGCAGTTGCCGAGAAGAAGAGCATGGATCGCGTGAACGAAAACGCGGAGAGGAAAGAGACGAAAGAATATACGAACAAATGCAAGTACTGTCCGAAAACTTTCCGCAAGCCGAGCGACCTTATTAGACACATTCGCACGCATACAGGCGAGCGGCCGTACAAGTGCGACCACTGCAACAAGAGCTTCGCGGTTAAGTGCACCTTGGACTCGCACATGAAGGTTCACACGGGCAAGAAAACGTTCTGCTGTCATGTCTGCAACAGCATGTTCGCCACGAAGGGCAGTTTGAAGGTCCACATGCGACTGCACACGGGTTCGAAGCCGTTCAAGTGTCCCATGTGCGACCTGCGATTTCGCACTTCGGGTCATAAGAAGGTGCACATGCAGAAACATGCGAGGGAACATAAAGGCGGCGCGAAGCGCAAGCCTAAACACCAAAAGATCGCGGTAGTTGCGCAAGCGGCGGCCAGCCTCGAAAAGATCGGCAACAGTTCTCTGGACCACGCATCGACAacaacgacgatgacgacaacaacaacaacggcggcggcggcggccgaGGTCGCGCCATCGCAGAATCTCGATTATTCCGCGTTGGAGCACGCCGAAATGAACCTTAGCGGTGCGGTTCACCTGCCGGGTCAAATCGCGTTCAATCATACCGacgcgacgacaacgacgattCTCAACAACAATTCCATGCTGTCTTTAAACGACAGCAACGAGCTGGTGGCGAATCTGCAATTCCTGCTAGCGAACGGTCTCGTCACTATCCAAACAGACGATACCATGCTGACGACGCAGCCAGCAACGAACAGCGCCGCCGAAGTGCCGACCAACGTGATCGAGTTGGTCGGTACGAATCCTTTCCAGGAAGCCTGCAATCTGGGTAACGCCAATCATCAGATAGTGATAACCAGCCAGGTGCCAAGTGAGACGACGACCGCGAATGCGAGCGACGCGGCGATTATTCAGATGAACGATTGCTTGCCACCTGTTTCCATAGTACAGATGCAGAATCACGGTACGAACATCGGTGGCGACGCATCCAAAGCAAAGACGAGCGGTCAGTCGACGACGGCAGCATGTGACAATCAAGCGGCGACGACGGGGACAGCTAAAACCTCGACGCAGTCGTCGCGGAAGGAGTGCGACGTATGCGGCAAGACGTTCACGAAGCCATACCAGATGGAACGACACAAGCGCATCCACACGGGCGAACGGCCATACAAGTGCGAACAATGCGGCAAGTCATTCGCGCAGAAATTTACGCTGCAGCTGCACCAGAAGCATCATACCGGCGACCGGCCGTATCCCTGTCCGCACTGCAAGCACTCGTTCACGCAGAAGTGCAATTTGCAGACGCATCTGAAGCGCGTCCATCAGGTGGTCATGCTCGACGTCAAGAAACTGAGAAGCGGCCAGCAAATGTTGGGCGCGCTACTGCAGGAGAATCAAGGAACGGACACCAAGTTGGTAAATCTGGATGATATACTTGTGGTAGATTTTCTCAAGTGA
Protein Sequence: MSANMLTEQNVIMEFTDSSNTVPIGFITTDDGHTLFAVGEHEDGTLEIMATPITLMPQNNIVSSALIKTVDGNFILHPFYIINIFLFQPIFQLNVEGPPGTVMQQANLLPIQQNGSAIMEQLKIVQNINECAITESLLSVRDDSNVLLNKEENCRRQTEKQATIDNHVKNKSMSVSTSVHKKSPGRPKKTETTQSLKCDICGQEFTKHTLYRRHMENHAEEKPHRCPKCPASFNIPTNFTLHMATHNIGDPKCPECGRKYARMASLKSHMLLHEKEENLFCTECEDAFSTKAQLDAHLKLHGEKWANEDVGVRKCKLCSKQFTQPALYRMHIREHYRLQTKIVKQTKRGTKHKTMYKCTICLKNFQKPSQLMRHIRVHTGEKPFKCTVCNRAFTQKSSLQIHAWQHNGIRPHTCSLCNAKFSQKGNLKAHILRVHNAPEGEPTYACSYCSCIFKKLGSLNGHIKRMHSNPEEESAEKSSAVNSSISSEADMRATVDSVISQLASLEAVVNNTADSTGTATLNAEQNDILQQALKNSGLPNKNEVPSKEIAEPKKTDSPTTYVTLLDKTAGSTSSKYHAIKQRCIGNVRWYVCSFCPKEFKKPSDLIRHLRVHTQEKPFKCMYCVRSFALKSTMIAHERTHTGVKKYACASCNKTFACHSSLTSHTRLHMKPHKCNICGKLFNSNIILKNHMKCHMREKPKISPEAESLVPQVVLQEPLVISDAGNKISVAQVQSKQKQLYENSGVTRPHECWVCHAAFRKVSHLKQHYRRHTGERPYKCSKCDRRFTSNSVLKSHLHTHDDARPYSCSVCNTKFSTQSSMKRHLVTHSNKRPYMCPYCHKTFKTYVNCRKHIKRHKHELVQRQLEEQKTQEQKEQQPLRENKEAGSAALPASITLGEDMEVSFQPQMAPDFTQAFSDQFQNISAEKEKSLLTNSATTSVANRNLPVDTANLGTSQTLHADETGTITLSHYSGDQTLTAESIREIEETLNQQLFNIGMNLGLASNLPRQMDETNTNSLDNSREQPVLNIIYEHNKNLDSSGNAIFTSQFDSFDMSQITLQTDSEMDIGLNPSNTASMSGILPRSVEGNNRQQEEQRAIPVTTIDNIDTSAITKNAHLMVINPKDNCSELVRLSQVCPSKYSKAIAKPDTANGLIEVQGATEHEKAPQKSNIISCESERNSLFMKNFQSTIQPETFVSSGTNNSAKISEYNNLLECHICRRNGFTAERLKEHLRSHCGAKTYECPECSQRFYTNGGLSRHMKRLHTELLKCTTCKKVLDNKSQLKYHNKMHSGVWKVMRVGSNEKDVISSSRLSSITTLDIRANPDSSVSEKVLMDAVAEKKSMDRVNENAERKETKEYTNKCKYCPKTFRKPSDLIRHIRTHTGERPYKCDHCNKSFAVKCTLDSHMKVHTGKKTFCCHVCNSMFATKGSLKVHMRLHTGSKPFKCPMCDLRFRTSGHKKVHMQKHAREHKGGAKRKPKHQKIAVVAQAAASLEKIGNSSLDHASTTTTMTTTTTTAAAAAEVAPSQNLDYSALEHAEMNLSGAVHLPGQIAFNHTDATTTTILNNNSMLSLNDSNELVANLQFLLANGLVTIQTDDTMLTTQPATNSAAEVPTNVIELVGTNPFQEACNLGNANHQIVITSQVPSETTTANASDAAIIQMNDCLPPVSIVQMQNHGTNIGGDASKAKTSGQSTTAACDNQAATTGTAKTSTQSSRKECDVCGKTFTKPYQMERHKRIHTGERPYKCEQCGKSFAQKFTLQLHQKHHTGDRPYPCPHCKHSFTQKCNLQTHLKRVHQVVMLDVKKLRSGQQMLGALLQENQGTDTKLVNLDDILVVDFLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00280100;
90% Identity: iTF_00729502;
80% Identity: -