Basic Information

Insect: Lasioglossum vierecki
Gene Symbol: -
Assembly: GCA_028455595.1
Location: CM052339.1:5013318-5017981[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 4.8 8.9e+03 -3.3 0.1 28 40 116 128 116 131 0.64

2 5 6.4e-13 1.2e-09 37.9 0.0 1 39 349 388 349 392 0.90

3 5 2.3e-12 4.2e-09 36.2 0.1 2 39 404 441 403 444 0.94

4 5 8.2e-19 1.5e-15 56.8 0.0 2 45 459 503 458 503 0.97

5 5 9.4e-19 1.8e-15 56.6 0.1 1 42 510 552 510 553 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	4.8	8.9e+03	-3.3	0.1	28	40	116	128	116	131	0.64
2	5	6.4e-13	1.2e-09	37.9	0.0	1	39	349	388	349	392	0.90
3	5	2.3e-12	4.2e-09	36.2	0.1	2	39	404	441	403	444	0.94
4	5	8.2e-19	1.5e-15	56.8	0.0	2	45	459	503	458	503	0.97
5	5	9.4e-19	1.8e-15	56.6	0.1	1	42	510	552	510	553	0.97

Sequence Information

Coding Sequence: ATGTCCGAGGACATTTTCCGATACAACGTTCTTCCGAGATACTTGTGCAAGTTGTCTCGTTCCGCGGAGAACTTCGATTTCCGCGAAACTGTTCAAGTTTCATTATCTGCTTGCCATTTGTCGCGTTGGTTTCGTTTCCGAAAATATTCAGAGTCTGAACTCCAAGAAAAATGTAAGCCATCCTCGTTCAAGAGCGGATCTTCCAGCAGGAAGTCTTCCATCGACTCGTTATTGAAAACGGCAGATCAGCTGAAGATCAAGGGGTTGTGCGAAGTGCCGGAGAGCAGGGACGGTCCGCCATCGGTGAGTCTGAGCTCGCCGCCACGGGAACCAGGCACTCCCAGGATAAATTTCAGCAAGTTAAAGAGGCGGTACAAACGAGCGAGGACCACGTTCGAGCCTCGCGCAACGGATTCGAGGCACTACGACAGATACAAAGAGGAGGAATCGAACGGGAATTACAATCCGGAGAACAAAGAAAATCACAGAGACTGGCAGACCGAAGATGAAGATTGCACGGAGGCCACAACAGCAACAGTAGTCTTGGAAACGTGCCAACGGACCAATAACAATAACAACAATAATAACAACGGTAACGGTGCGAACAACAATAATAACGGTGACATGTTCTGTCATACAGGTCTCGGACACTATGGACACCATCCGGATCCTGGGGAAGTCGATCTACCCCCAGAGACCCAACCCACTCCACCTAGCGCCACGTTGGTCGGCACTACGATCACTCACCTCAGGGATCCGGATCACCATTCCACAGAGATTCAGAACTGTGACAGTGTGAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCGGACACAATCGACATCGACAGCCACATGTCGGACCGGGCGAGTGTCAGTTCGAAGAACGCAGCGGACAGCGACAACATGATGATGATCACGCCGGAGCTGCTTGGTTTAATGCCCTCTGGAAGTTCCGTCCACTCGGATTCCGGTGAAAACAACTCGAGAGGCCATTCGGGACAGTCGAGCTCTCATCATCACGGCTCGAAGTCGTGGACCCAGGACGACATGGACGCAGCTTTGGAAGCTTTGAGGAACCATGACATGAGCTTGACCAAAGCCTCCGCAACCTTCGGCATACCATCGACGACATTATGGCAAAGAGCGCACCGGTTAGGCATTGACACACCAAAAAAGGATGGACCAACGAAATCGTGGAGCGACGAAAGTCTGAACAACGCCCTCGAAGCGCTGAGAACAGGCACGATCTCGGCTAACAAGGCATCGAAAGCGTTTGGAATACCTTCGAGCACGTTGTACAAAATCGCGAGGAGGGAAGGCATCAGATTGGCTGCGCCGTTTAACGCCAGTCCTACCACATGGTCGCCCGCTGATTTGGACCGCGCTTTAGAAGCAATAAGGTCTGGTCAAACGTCTGTGCAGAGAGCTTCCACCGAATTCGGTATTCCAACAGGGACCTTGTACGGTAGATGTAAGAGGGAAGGAATCGAATTGAGCAGAAGTAATCCTACGCCATGGAGCGAGGATGCTATGACAGAAGCACTCGAAGCCGTCAGACTGGGACACATGAGCATCAATCAAGCAGCCATTCACTACAATCTACCCTATTCGTCGCTGTACGGTCGGTTTAAGAGGGGGAAGTACGAAGAACCTGCAGTCGGTGATCTATCGCAAGACGGGAGCAATCCACATTTTCATCAAAGTCCGAATCAGAATCATTCGTCCGCCGTTCCCGATCAAATGCCCTACCAAGGCAGCTGA
Protein Sequence: MSEDIFRYNVLPRYLCKLSRSAENFDFRETVQVSLSACHLSRWFRFRKYSESELQEKCKPSSFKSGSSSRKSSIDSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFSKLKRRYKRARTTFEPRATDSRHYDRYKEEESNGNYNPENKENHRDWQTEDEDCTEATTATVVLETCQRTNNNNNNNNNGNGANNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQDDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDLSQDGSNPHFHQSPNQNHSSAVPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_00306165;
80% Identity: -