Lpau002947.1
Basic Information
- Insect
- Lasioglossum pauxillum
- Gene Symbol
- -
- Assembly
- GCA_028455745.1
- Location
- CM052307.1:27949907-27957767[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 4.6 1e+04 -3.1 0.1 28 40 60 72 60 75 0.64 2 5 7e-13 1.5e-09 37.9 0.0 1 39 293 332 293 336 0.90 3 5 2.2e-12 4.7e-09 36.3 0.1 2 39 348 385 347 388 0.94 4 5 7.9e-19 1.7e-15 56.9 0.0 2 45 403 447 402 447 0.97 5 5 9e-19 1.9e-15 56.8 0.1 1 42 454 496 454 497 0.97
Sequence Information
- Coding Sequence
- ATGTCCGAGGACATTTTCCGCTACGACATTCTTCCGAAATATTTCCGCAAGCTCGCTTCGTTATTGAAAACGGCAGATCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAGCAGGGACGGTCCGCCATCGGTGAGTCTGAGCTCGCCACCGCGGGAACCAGGCACTCCCAGGATAAACTTCAGCAAGTTAAAGAGGCGGTACAAACGAGCGAGGACCACGTTCGAGCCTCGCGCAACGGATTCGAGGCACTACGACAGATACAAAGAGGAGGAATCGAACGGGAATTACAATCCGGAGAACAAAGAAAATCACAGAGACTGGCAGACCGAAGATGAAGATTGCACGGAGGCCACAACAGCAACAGTAGTCTTGGAAACGTGCCAACGGACCAATAACAATAACAACAATAATAACAACGGTAACGGTGCAAACAACAATAATAACGGTGACATGTTCTGTCATACAGGTCTCGGACACTATGGACACCATCCGGATCCTGGGGAGGTCGATCTACCCCCAGAGACACAGCCCACCCCACCTAGCGCCACATTGGTTGGCACTACGATTACCCACCTGAGGGACCCGGATCACCATTCCACAGAGATTCAGAACTGTGACAGTGTGAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCGGACACAATCGACATCGACAGCCACATGTCGGACCGGGCGAGTGTCAGTTCGAAGAACGCAGCAGACAGCGACAACATGATGATGATCACGCCGGAGCTGCTTGGTTTAATGCCCTCTGGAAGTTCCGTCCACTCGGATTCCGGTGAGAACAACTCGAGAGGCCATTCGGGACAGTCGAGCTCTCATCATCACGGTTCGAAATCGTGGACCCAGGAAGATATGGACGCCGCTTTAGAAGCTTTAAGGAACCATGACATGAGCTTGACCAAAGCCTCCGCAACGTTCGGCATACCATCGACGACATTATGGCAAAGAGCGCACCGGTTAGGCATAGACACACCAAAAAAGGATGGACCAACGAAATCGTGGAGCGACGAAAGTCTGAACAACGCCCTCGAAGCGCTGAGAACAGGCACGATCTCGGCTAACAAGGCGTCGAAAGCGTTTGGAATACCTTCGAGCACGTTGTACAAAATCGCGAGGAGGGAAGGCATCAGATTGGCTGCGCCGTTTAACGCCAGTCCTACCACATGGTCGCCCGCTGATCTGGACCGCGCTTTAGAAGCAATAAGGTCTGGTCAAACGTCTGTGCAGAGAGCTTCCACCGAATTCGGTATTCCAACAGGGACCTTGTACGGTAGATGTAAGAGGGAAGGAATCGAATTGAGCAGAAGTAATCCTACGCCATGGAGCGAGGATGCTATGACAGAAGCACTCGAAGCCGTCAGACTGGGACACATGAGCATCAATCAAGCAGCCATTCACTACAATCTACCCTATTCGTCGCTGTACGGTCGGTTTAAGAGGGGGAAGTACGAAGAACCTGCAGTCGGTGATCTATCGCAAGACGGGAGCAATCCACATTTTCATCAAAGTCCGAATCAGAATCATTCGTCCGCCGTTCCCGATCAAATGCCCTACCAAGGCAGCTGA
- Protein Sequence
- MSEDIFRYDILPKYFRKLASLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFSKLKRRYKRARTTFEPRATDSRHYDRYKEEESNGNYNPENKENHRDWQTEDEDCTEATTATVVLETCQRTNNNNNNNNNGNGANNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDLSQDGSNPHFHQSPNQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00306165;
- 80% Identity
- -