Loen004679.1
Basic Information
- Insect
- Lasioglossum oenotherae
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_028455765.1
- Location
- CM052295.1:15100346-15102651[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.6e-114 7e-110 367.1 37.1 1 300 29 327 29 327 0.97 2 3 0.0028 55 3.0 3.2 122 172 327 377 325 384 0.91 3 3 0.04 7.9e+02 -0.8 5.6 194 238 358 401 339 402 0.57
Sequence Information
- Coding Sequence
- ATGGAGGCTGCTATAGCTGGACGTAGGCGGACCGCCGCGAGACATTCGGCGGAGGATCAAGCTCTTGATCAGATAGCCAAGGAGGCAGAAGCTAGATTAGCCGCAAAGAGACAGGCAAGAGCTGAAGCGAGAGAAATACGAATGCGTGAACTAGAAAGACTACAAAAAGAGGCAGAAGAGAATGCGGATAGGGTTTACGACATGTGTTCCGCTGACGTAAATAGAACGATGAGAGTAACTCCAGATTCCGTAAGGACGTCGCGACTTCTTACGAATTCGAACAATTTTCAATCGAGTCGTAGGTCTTCCGAAGACTCTCTAGAAGATGCTGGCCTAAGTAGAGATCTGAGGTTAGAGCTAAAAGAGTTTGAAGAGAAATTTAGGAAAGCTATGATAGCTAATGCTCAGTTAGACAATGAAAAGTCTTCTTACGCCTACCAAGTTGATTTGTTAAAAGACAAGTTGGAAGAATTAGAAGAAACGGTTGCACAACTTCGTAGGGAACTTCGTGAGAAGAATCGGGAATCGGAACAATTGAAAAGAATCAGTCAGAGATTGAAAGAAGAGTTAGATATATGCCATGCACAATTAATAGATAGAGATACGCTTATACAAGAGAATGGTTTAGTTATTCTTGACGACGAGGAGAGTGAAAACGAAGAAAACGATATCGAAAATGACCCGCGTCCGAGACGAAGAGTACTAGTCAGTACAGAAGCAGCAGAATTGTTGCAAAATGCTGGGAAAGGTTCATTAGATGTCCGGCTGCGAAAATTTGCTTCGGAAAAGAAGGAATTACAGGACGAGATACGGCATTTAAGATTGGAATTGGAAGAGACCAGGAATCGCACCAGGTCCGAGAAATCACCTGGTTCGGTGTTAGGTTGTTTGTCAGATTCCGAGGACGTGCAGCGAGAAGCGAATAAATTGTTAGCCGATTACAAGTTCAAGTTGCAGAAAGCAGAGCAGGATATGTCTACTTTACAAGCGACCGTAGCCAGGCTAGAGAGCCAAGTGATACGTTACAAGTCAGCCGCGGAAGCATCGGAGAAAGCGGAAGACGAATTGAAAGTTGAAAAACGAAAACTTCAGAGAGAAGTCAGAGAGACGCAAGGTCGCGTCGAGGAATTAGAGACTGCGAATTCTCATTTACAGAGGCGACTAGACAAACTTAAAAACGCGAAATCGGCTCTGTTGAAGGAGCTTTGA
- Protein Sequence
- MEAAIAGRRRTAARHSAEDQALDQIAKEAEARLAAKRQARAEAREIRMRELERLQKEAEENADRVYDMCSADVNRTMRVTPDSVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETVAQLRRELREKNRESEQLKRISQRLKEELDICHAQLIDRDTLIQENGLVILDDEESENEENDIENDPRPRRRVLVSTEAAELLQNAGKGSLDVRLRKFASEKKELQDEIRHLRLELEETRNRTRSEKSPGSVLGCLSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00966027;
- 80% Identity
- iTF_00865317;