Basic Information

Insect: Lasioglossum oenotherae
Gene Symbol: -
Assembly: GCA_028455765.1
Location: CM052282.1:3060717-3066283[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.9 7.6e+03 -3.1 0.1 28 40 62 74 62 77 0.64

2 5 5.9e-13 1.2e-09 37.9 0.0 1 39 295 334 295 338 0.90

3 5 1.8e-12 3.6e-09 36.3 0.1 2 39 350 387 349 390 0.94

4 5 6.6e-19 1.3e-15 56.9 0.0 2 45 405 449 404 449 0.97

5 5 7.5e-19 1.5e-15 56.8 0.1 1 42 456 498 456 499 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.9	7.6e+03	-3.1	0.1	28	40	62	74	62	77	0.64
2	5	5.9e-13	1.2e-09	37.9	0.0	1	39	295	334	295	338	0.90
3	5	1.8e-12	3.6e-09	36.3	0.1	2	39	350	387	349	390	0.94
4	5	6.6e-19	1.3e-15	56.9	0.0	2	45	405	449	404	449	0.97
5	5	7.5e-19	1.5e-15	56.8	0.1	1	42	456	498	456	499	0.97

Sequence Information

Coding Sequence: ATGCCCGAGGACATTTTCCGCTACAACATTCTTCCGGAATATTTCTGCAAGCTCCGCTGTCCATCTTTATTGAAAACGGCAGATCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAGCAGGGACGGTCCGCCATCGGTGAGTCTGAGCTCGCCACCACGGGAACCAGGCACTCCCAGGATAAATTTCAGCAAGTTAAAGAGGCGGTACAAACGAGCGAGGACCACGTTCGAGCCTCGCGCAACGGATTCGAGGCACTACGACAGATACAAAGAGGAGGAATCGAACGGGAATTACAATCCGGAGAACAAAGAAAATCACAGAGACTGGCAGACCGAAGATGAAGATTGCACGGAGGCCACAACAGCAACAGTAGTCTTGGAAACGTGCCAACGGACCAATAACAATAACAACAATAATAACAACGGTAACGGTGCAAACAACAATAACAACGGTGACATGTTCTGTCATACAGGTCTCGGACACTATGGACACCATCCGGATCCTGGGGAAGTCGATCTACCCCCAGAGACCCAGCCCACTCCACCTAGCGCCACATTGGTCGGCACTACGATTACCCACCTGAGGGACCCGGATCACCATTCCACAGAGATTCAGAACTGTGACAGTGTAAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCGGACACAATCGACATCGACAGCCACATGTCGGACCGGGCGAGTGTCAGTTCGAAGAACGCAGCAGACAGCGACAACATGATGATGATCACGCCGGAGCTGCTTGGTTTAATGCCCTCTGGAAGTTCCGTGCACTCGGATTCCGGTGAAAACAACTCGAGAGGCCATTCGGGACAGTCGAGCTCTCATCATCACGGTTCGAAATCGTGGACCCAGGAAGATATGGACGCCGCTTTAGAAGCTTTAAGGAACCATGACATGAGCTTGACCAAAGCCTCCGCAACCTTCGGTATACCATCGACGACATTATGGCAAAGAGCGCACCGGTTAGGCATAGACACACCAAAAAAGGATGGACCAACGAAATCGTGGAGCGACGAAAGTCTGAACAACGCCCTCGAAGCGCTGAGAACAGGCACGATCTCGGCTAACAAGGCGTCGAAAGCGTTCGGAATACCTTCGAGCACGTTGTACAAAATCGCGAGGAGGGAAGGCATCAGATTGGCTGCGCCGTTTAACGCCAGTCCTACCACATGGTCGCCCGCTGATCTGGACCGCGCTTTAGAAGCAATAAGGTCTGGTCAAACGTCTGTGCAGAGAGCTTCCACCGAATTCGGTATTCCAACAGGGACCTTGTACGGTAGATGTAAGAGGGAAGGAATCGAATTGAGCAGAAGTAATCCTACGCCATGGAGCGAGGATGCTATGACAGAAGCACTCGAAGCCGTCAGACTGGGACACATGAGCATCAATCAAGCAGCCATTCACTACAATCTACCCTATTCGTCGCTGTACGGTCGGTTTAAGAGGGGGAAGTACGAAGAACCTACAGTCGGTGATCTATCGCAAGACGGGAGCAATCCACATTTTCATCAAAGTCCGAATCAGAATCATTCGTCCGCCGTTCCCGATCAAATGCCCTACCAAGGCAGCTGA
Protein Sequence: MPEDIFRYNILPEYFCKLRCPSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFSKLKRRYKRARTTFEPRATDSRHYDRYKEEESNGNYNPENKENHRDWQTEDEDCTEATTATVVLETCQRTNNNNNNNNNGNGANNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPTVGDLSQDGSNPHFHQSPNQNHSSAVPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_00306165;
80% Identity: -