Basic Information

Gene Symbol
ARID5B_1
Assembly
GCA_028455765.1
Location
CM052284.1:1093997-1104655[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.9e-24 1.1e-20 74.0 0.0 1 89 239 325 239 325 0.95

Sequence Information

Coding Sequence
ATGTCGAAGATCTCGCAGATGAAACGCTATTACCTGCAGGACGAGGTGCTGACGATATCAGAGAAGGTGGTGGTTCGGGTTCACGATCTTGTCACGTGGCTGTCGCCGGCGTTGGAGTGGTCATGGGGACGGGAAGTCTCTTACCCGCCGACCCCTACCTCATCCCCGGAGAGCAGTCCGTTGAGGTACGAGATACCACAGCCCCAGGTGCTCACCGACCCCGGCATCGATTTTTCCGACGTCGATAAGCAGCAGAAGGAGTACGAGTCCTACCACAACACCAGGAGGACCGAGTACGGCGCGCAGACCAAGGTAGTCGTCCTCTCGTACCCAAGGTACTGTCGGTACCGGGCCCTGTTGCGAAGGCTCGAAGGGGCTGAACCTGCTTGGCTATGCTCCTCCGTCGCTGCAGCCTTGGGAGGGTTCATGGCCACACCGGGCACCAGGGTACTCTTCTGCAGGGACACCTTCGACTATCCGGACCTTGAAACGCACGAGCTGCTCTGCAACCATTTAGCGCCAAAATTGAAAGGACGACCTAGGAGGAAGCGTAAAAAACGCAGCGCATCGCCAGGGGAGTCGAGCAATGAAAGCGAAGCGTCTGTGGCGTCGACGTCGAAGAGTGCGACGTCGACGAGCGCCGGGAGCCTGATTTCGAACGTCGGGAGGCCTCCGTCGTCGGTGGTACGTCGGAGCGAGAGGAACACTAGCGCGGAAGAGAAGAAGTTTCTCCAAGACGTGCAGAATTTCATGAACTCGAGGGGTACGCCTGTCGGAAAGATGCCACTGCTGGGCTACAGGCAGATCGATCTTTTCCCGTTTTATACGAAAGTTCAAATGCTCGGCGGCTACGACAACGTCAGCGCCGGACGATTGTGGAAAACGATCTACGACGACATCGGGGGCAACACAGGGTCCACCAGTGCCGCCACCATTACTCGTCGACATTACGAAAGGTTACTGTTACCTTACGAGAGGTACCAAAGGGGCGAGGAAGCAAAAGTGAGACTGAACCATGGAAGACGAACCAAATCTAGTAGCGTCTCCGACGAGTCTGAAGAAATCAAGCAAGAAACCAATGATCCGTACCCTTCGGAAACGCCGCCGCCTGTAGAAACGAGTCTTACCACTACTACTCCCCCGTTACAGCCAATTATAACGACAGCGCCGTTCCTGCCAGGCGAGAAGCCGAAGACGGAGACGGGGAAAACGTCGTCGTTGCGTAGCGTGCGGGTGAAGCCTGAGCGGCTGAAGTCGTTGAACACGATGATCGCGAATAGCACGCCGTCTCCTAGCCAGCAAGCCAGCCAACTGCCAAGTCCGCCGCCTTCGTCGAACACGTCGATCTCGACGCCGAGCAGTACGCCATCGACGACACCGACGAACGTTGCGACGAATGGGAACAGCCAGAGCGTGTTGGAGAGGCAGTTGAATAGCCCGTTGATATCTCAACAGGTTCCACCGTCGTGTTCGCCGCCGGGGCTTCCAGTGACCACGGTGGCAACGAACGCCACCACGGTGGTCACGTTGACGCCACCGCCGGAGAAAGACATGAAGGAGATCAAGTTAGATCCGAAGCAGACGTCCCTGCTGGCCCAGGGCAAGGAGAACATACCTCTGTTCGGGGAGAAGCCAATATTCGGGGAGAAGGCGATCGTGCCGCCCCGATCGCCAGAAGTGATCGACCTTGAGTCGGAGAGCGACACCAGCAGGGACAAGATCATCATTCCCAGCTTCAAGAAGCGCAAGCTCGAGATCCTTCGCGAGGGAGGTCTCGAGGTCACTGCCGTGGATCTGGACACCCGGCCGAGCGTGATCCAAAGCAATCCGCCAGCGCCTGCCACCATGAAGACCGAGGAGAAACCGCCGATCTCGTACCCGTTGCCGGTCACGCCGAACTCCATTCCGAAGCTGATCTCCGTAACCGTCACGCCGGACATCGGCCACATGCTGTCGTCGCCGCAAGACCACCAGCATCCTCATCACCAGGCGAGGCTCCAGGTGCCTACCAAGCAACCACCTGCTCACCATAACAATAACAACAACACCACCACTGTCAACAACAACAACATGGTGAACAGTCGTGTGATCAACCTCGGCACGTCCAACAACGCTGCGTTGTTGCAACTGTACGCGAATGCCAATGTACCACCACCAGCCTCGGCCATCCATCATCAAGCAAACCAGCGGTTCGTCCCACCGTCGGTTCCCAATGGCAGGATATATCCGCCAAAGGTGATGCAGTCGAGGTCGATATTCGCGCACAACGAAAAGACCGTTTACGGGGACCCGAAAGACATTCTCGTCCCTCCAAAGTATCGGCCCACGCATCACCGTTTGCAACCGCCGCCGCACCATCATTACCACAACCACCACCATCACAACCATAGCCACAATCACCACCATCATCACCACGGCCCGGTGAACAACAACAACGAGATGGTGGCGCACGGCGGCGTTCTCGATCTGACGCAAAAGTCCTCCCCCGAGAAGCCAGTGTTCTCGCGGCCGAGCCTAGAAATAGTTAAAGTACCTGTAGTGCCGAGGCCTAATCCACTGAACCTGGAGATGAGGAACTCGTCCACGATCAAAGAGAAGCCGACGGACTGCTCGAAACGCGGTCCGCCCGGCGGCGGCGGCGGTTATGCTGGCTACCAGAACGTTCTGGACAGCCGAACGATGGCGTCGAACAACCTGGAGATCACGATTGTCAATCCGAAACACAAGAGCAATCACCTGAGTCCGCCCGTGCGGGTGCCAAGTCCACCGAATCGGAATCATACTGTACCAGGACAGAGAAGGCACCAGGCGAACGGGAAATATACGACGAGGAGCGAACCGGTTTCACCGTATACACCTAGGAAGCCAAGTAGTCACCCTGTGATACCGAACGTACCTAACCTGAACCATTTGAACAGCGGGAACTACCCTAGAATGCAGGCAGCGATGCACCAGCAGATTAGTATAGACAGGAGAAAaaacgtggagactggaggtaaagatatgcaccagcagctgcagcaacaacaacaacagcagtatcatcaacagcgtcggatcagcgaaggcgataagtcgttaatcgctcagcagcagcagcagcaacaacaacaacagcagcaacagcaacaagaagccaggcaaaaCGAAGCTGGGAGGCGGCACAGCGTACCCAGCATACCCTCAGGATTCGTGCCCCAGGTGCCGCAAAGCAATCCAGCCTTCCTCCCTCAACTGCCAACGAACACGCCCGGCAAGTTCCTACCAATTTTGGACCCGATGTACTATTCCGCGTTCTACAACGGTCTGTTCCCGCCGCCGATTCCGCCCACGGCCCCCGCGTCCTTTCTGCCGCCGGAGTTCAGCGCGTATTACAAAGAATTACTTGCTTCCTCGCAACCAAGACTGGGGATGGCGGGGCAGCACCAGCCGGCTGCCCCAACGTCTAAATAG
Protein Sequence
MSKISQMKRYYLQDEVLTISEKVVVRVHDLVTWLSPALEWSWGREVSYPPTPTSSPESSPLRYEIPQPQVLTDPGIDFSDVDKQQKEYESYHNTRRTEYGAQTKVVVLSYPRYCRYRALLRRLEGAEPAWLCSSVAAALGGFMATPGTRVLFCRDTFDYPDLETHELLCNHLAPKLKGRPRRKRKKRSASPGESSNESEASVASTSKSATSTSAGSLISNVGRPPSSVVRRSERNTSAEEKKFLQDVQNFMNSRGTPVGKMPLLGYRQIDLFPFYTKVQMLGGYDNVSAGRLWKTIYDDIGGNTGSTSAATITRRHYERLLLPYERYQRGEEAKVRLNHGRRTKSSSVSDESEEIKQETNDPYPSETPPPVETSLTTTTPPLQPIITTAPFLPGEKPKTETGKTSSLRSVRVKPERLKSLNTMIANSTPSPSQQASQLPSPPPSSNTSISTPSSTPSTTPTNVATNGNSQSVLERQLNSPLISQQVPPSCSPPGLPVTTVATNATTVVTLTPPPEKDMKEIKLDPKQTSLLAQGKENIPLFGEKPIFGEKAIVPPRSPEVIDLESESDTSRDKIIIPSFKKRKLEILREGGLEVTAVDLDTRPSVIQSNPPAPATMKTEEKPPISYPLPVTPNSIPKLISVTVTPDIGHMLSSPQDHQHPHHQARLQVPTKQPPAHHNNNNNTTTVNNNNMVNSRVINLGTSNNAALLQLYANANVPPPASAIHHQANQRFVPPSVPNGRIYPPKVMQSRSIFAHNEKTVYGDPKDILVPPKYRPTHHRLQPPPHHHYHNHHHHNHSHNHHHHHHGPVNNNNEMVAHGGVLDLTQKSSPEKPVFSRPSLEIVKVPVVPRPNPLNLEMRNSSTIKEKPTDCSKRGPPGGGGGYAGYQNVLDSRTMASNNLEITIVNPKHKSNHLSPPVRVPSPPNRNHTVPGQRRHQANGKYTTRSEPVSPYTPRKPSSHPVIPNVPNLNHLNSGNYPRMQAAMHQQISIDRRKNVETGGKDMHQQLQQQQQQQYHQQRRISEGDKSLIAQQQQQQQQQQQQQQQEARQNEAGRRHSVPSIPSGFVPQVPQSNPAFLPQLPTNTPGKFLPILDPMYYSAFYNGLFPPPIPPTAPASFLPPEFSAYYKELLASSQPRLGMAGQHQPAAPTSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00862355;
90% Identity
iTF_00863748;
80% Identity
-