Basic Information

Insect: Lasioglossum marginatum
Gene Symbol: stc_1
Assembly: GCA_028455795.1
Location: CM052258.1:4817254-4821860[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2 2.1e+04 -4.4 1.6 15 19 552 556 551 556 0.81

2 13 0.085 8.8e+02 0.3 0.4 4 10 585 591 584 591 0.95

3 13 2.1e-05 0.22 11.8 13.9 4 18 602 616 600 617 0.94

4 13 3e-07 0.0031 17.7 18.3 1 18 653 670 653 671 0.97

5 13 1.4 1.5e+04 -3.6 0.8 6 10 699 703 698 703 0.88

6 13 4.4e-09 4.6e-05 23.5 11.2 1 19 709 727 709 727 0.98

7 13 1.3e-05 0.13 12.5 11.1 4 18 774 788 767 789 0.86

8 13 2 2.1e+04 -4.7 1.6 5 10 818 823 818 823 0.90

9 13 0.00059 6.1 7.2 8.4 1 11 829 839 829 840 0.97

10 13 1.2e-10 1.3e-06 28.5 14.3 1 19 856 874 856 874 0.98

11 13 2 2.1e+04 -6.7 8.9 10 19 921 931 910 931 0.77

12 13 6.3e-07 0.0066 16.7 12.6 1 16 967 982 967 993 0.85

13 13 2.5e-05 0.26 11.6 11.2 1 19 999 1018 999 1018 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2	2.1e+04	-4.4	1.6	15	19	552	556	551	556	0.81
2	13	0.085	8.8e+02	0.3	0.4	4	10	585	591	584	591	0.95
3	13	2.1e-05	0.22	11.8	13.9	4	18	602	616	600	617	0.94
4	13	3e-07	0.0031	17.7	18.3	1	18	653	670	653	671	0.97
5	13	1.4	1.5e+04	-3.6	0.8	6	10	699	703	698	703	0.88
6	13	4.4e-09	4.6e-05	23.5	11.2	1	19	709	727	709	727	0.98
7	13	1.3e-05	0.13	12.5	11.1	4	18	774	788	767	789	0.86
8	13	2	2.1e+04	-4.7	1.6	5	10	818	823	818	823	0.90
9	13	0.00059	6.1	7.2	8.4	1	11	829	839	829	840	0.97
10	13	1.2e-10	1.3e-06	28.5	14.3	1	19	856	874	856	874	0.98
11	13	2	2.1e+04	-6.7	8.9	10	19	921	931	910	931	0.77
12	13	6.3e-07	0.0066	16.7	12.6	1	16	967	982	967	993	0.85
13	13	2.5e-05	0.26	11.6	11.2	1	19	999	1018	999	1018	0.95

Sequence Information

Coding Sequence: ATGGCTACATGGGATGGTTCGTATTCCGAGTCGGACGATCAACATTTTTATTTGTACTCTGATCAAAATGTTGCTGCTTCTACAACCGGAAGCTGGACATTTTTTCCTGACGATGTAAGTAACGATTATACACGAGAAAATCGAGAATTTTATGTGCAAAATGATTCTGTGTTCCATCAAAATTGTCCAAGTACTTTATATCATTCGAATACGGATGTAATGCCCAACATTGTGACAAGTGGTGGTAATTATCAGGAACATTTAAGAAATCCATCAGATAATTCGCAAACATTGTCTAATATGCAACACTTGCCAAAAAATGTGAAACCAGAAAATTGCTTTGTACCTGCTGTCGATTATTGGAGCAACGATTACGATGCGAACGAGACTAAGATTAAACATAGTTATGCAAAAGGAACGAAACAACTTGCAACCATTACGAAAAAAGAGTCAAACTTACATGCTTCAGCTAGAGAATTTGTACCGAATCTGAATTCCAAGTCTGCTAATAATAGACAGGAATCGCAGAATATGGAACTTCCTTGTTCCATCGACCGTGTCGGCTGTTATGCCAAAGATACAAAACTTACAGAAGAAGAAACAACCGTCGATAGATACTCTATTGACAATGTAAATAAATGCGAACGAAAACAATACGAGAACAAAAGAAATTATAAGCTCAAAGAAGGACAACAAGATCAATTTTATAAAAAAAACAGATATACCAACTCGTATCATCAGAGAGGCAGAAGTTCTTACAAGTTTCAAGGTAATAAATATTATACTAATAAACATTATTCAGATAGATTGCAAACAGATATACAAGACGTATCGAGCTTAAACAAGGAAGAACCATATTCTAGTATGGATACAAATCTATATAGGAATAGAAAGTTACCGATCGAAAACAAGGATAGAAGAAGCACTGTTACCAAAGACAATAACGTAGAGTCTAATGGCATAAAGCAGTCTAATAATCAAGACAGAGAATTTACATATTCTAGTTCAGGGTCGAAACAATCGAATACATACCATAAAAACGCAAGGAAATATCCATATAATGCTAGACATAATAGGGAAGAATACAATTACAAAGAAAGAAAACATAATTACGAAGGGCAGAATGGAACTTGGCAAGGCTGTACCATGGAAGACAAGCAATTGGATAGGAACGAACAAACATGCATTCGAAAAGATTCTAACGAAATTAAGCAAGATATTAGCGAAGAAACTAATAAAGCTGTTGTAAAAGAAACCAAAGAAAGAGGATACAATTATCAAGGACGCAACGGATTCAAAGAACACAGAAAAGGAGACAAAACTGAAGTGTACAAGGAGAGGGATAGAAGCAAGAATAGTATATTCGATAATAAAGAAAAGGAAAATGAAAATTGGAGGAATAAGGGAGAAATCAGTGAAAAGGGCAGTATTCAAAAACGAATACAAAATAGAAGATCTCCGCTCGACGACGACGCGAATCAAAGGGAAAGACTAGCCGATCAATTAAACAGAGGACAATTGGAATGTTTAGTGTGTTGCGAGTGGATTAGACAGAACGATTACATTTGGTCGTGTTCTAATTGCTATCATGTTTTACATCTGAAATGTGTGAAAAAATGGGCAAAATCTTCGCAAGCAGATAACGGTTGGAGATGTCCAGCATGTCAGAATGTAAGTATAACGATTCCCAATGAGTATTTCTGCTTCTGTGGTAAGACGAGAGCTCCAGAATGGAATCGTAGAGATGTTGCGCATTCTTGCGGAGAAGTTTGTGGTAGAACATTATCGAAAAATACTTGTCCCCACAAGTGTACTCTTCTCTGTCATCCTGGATCTTGTCCGCAATGCGTAGCAATGGTTACAAGGTATTGTGGCTGCGGTAAAACATCGCAAACGGTACAATGTAGCGCGCACAAGCTATTGTTGTGCGATGATACGTGCGATAAGGATTTAAATTGTGGCACGCATAAATGCGAGAAAAAGTGTCATCACGGAGAATGTCCAAATTGCGAAAAAACAGTTGAGCAAGTATGTTATTGCGGTAAAGACAAGAGAAAAATAACTTGTCAAAGTAATATTTTGCTTACGTACTCTTGCAAAAGCGTCTGTGGTAAATTATTAGATTGTGGTAATCATACGTGCGCGAAGCTATGCCATCCAGATGATTGCGATCCATGTAGTTTGACCCCAGAGAAAGTAACAACTTGCTGCTGCGGCCAAACACCGTTGACAGAGAAACGACAAACTTGTTTAGATCCAATCCCGGTTTGCGACAAAGTATGTTCGAAAAGTCTAAAATGTGGTCAGCCGAATAATCCTCACATATGCAAAGCAACGTGTCACGAAGGGGATTGTCCTATTTGCGATTTAACTACAGACGTTAAGTGTCGTTGCGGAAACATGGATAGAGAAATAGCTTGTAAGGATTTAATATCAAAAGCTGACGATGCTCGATGTGAAAAAAGATGCACAAAAAAACGATCCTGTGGCAAACATAAATGTAACCAGCTGTGTTGCATAGAGGTAGAGCACGTTTGTCCTTTGATGTGTTCTAAAACTTTGAGCTGCGGCAAACACAAATGCGAACAAACTTGTCATAAAGGAAGATGTCAACCTTGTTGGCGTAGCAGCTTCGAAGAATTATATTGCGAATGTGGAGCTGCCGTGATATATCCTCCAGTACCCTGTGGTACTAGAAGACCCGTTTGCGATAGGTCTTGTTCTCGTCAGCATTCCTGTGGGCACGAAGTGTTTCACAATTGTCATAACGAGCCTACGTGTCCTCCCTGCACCGTCCTTACGCAGAGGTGGTGTCACGGTAAACACGAGCTTCGTAAAGCTGTACCGTGTCACTTTAATGGAATTTCGTGCGGTTTACCGTGTAATAAGCCTATTTCTTGCGGTCGACACAAATGTCTCGCAATTTGTCATCCTGGTCAGTGCGAAAAACCTGGACAACAATGTTCTCAACCGTGTACTATTCCACGAGAAATGTGTGGACACATTTGCGCCGCTCCGTGTCACGACGGTAAATGCCTAGATACGCCGTGCAAAGAAATGGTGAAGgtaacatgccagtgcggacatagaactacatctcgtgcttgtgccgagaattcgaaagagtatcaaagaatagcgagcagcatattagctagtaaaatggctgatatgcaactaggtcattccgttgatttggaagaggtatttggtcaaggagcaaaaaaacagaatcagttgaaaacgctagaatgtaacgacgaatgcaagctgatagaacgaaatcgaagattagcactaggtttgcaaattgtaaacccagatttgagtggaaaattaatgcccagatatagtgaTTTCATGAAGCAGTGGGCTAAAAAAGATCCACTATTTTGTCAAATGGTCCATGAAAAATTGACAGAATTAGTTCAATTGGCAAAGACCTCGAAGCAAAAATCACGCAGTTATTCGTTCGATAGCATGAATAAAGATAGACGTCATTTCATTCACGAGTCCTGCGAGCATTTTGGGTGTGAAAGTCAAGCATACGATCAGGAGCCTAAAAGAAATGTTGTTGCCACTGCTGTAAAAGACAAGTGTTGGTTGCCAAGCTATAGTTTATTAGAAATTGTGCAACGAAAAAATGGTCAGAGAAAAGTTCCTGGTCCAATGTTGAATACTTCAAAAGCTAACGGATCTGTAAAGACGATATTGTCACTGCCTACGAAAAAGAACCAAAAAGTAGAAATACAGTCTAATACAAAAATGCCGGAACCAGAACCAGAACCAGAACTAGAAccagaaccagaaatagactactttgattacaaaggttaa
Protein Sequence: MATWDGSYSESDDQHFYLYSDQNVAASTTGSWTFFPDDVSNDYTRENREFYVQNDSVFHQNCPSTLYHSNTDVMPNIVTSGGNYQEHLRNPSDNSQTLSNMQHLPKNVKPENCFVPAVDYWSNDYDANETKIKHSYAKGTKQLATITKKESNLHASAREFVPNLNSKSANNRQESQNMELPCSIDRVGCYAKDTKLTEEETTVDRYSIDNVNKCERKQYENKRNYKLKEGQQDQFYKKNRYTNSYHQRGRSSYKFQGNKYYTNKHYSDRLQTDIQDVSSLNKEEPYSSMDTNLYRNRKLPIENKDRRSTVTKDNNVESNGIKQSNNQDREFTYSSSGSKQSNTYHKNARKYPYNARHNREEYNYKERKHNYEGQNGTWQGCTMEDKQLDRNEQTCIRKDSNEIKQDISEETNKAVVKETKERGYNYQGRNGFKEHRKGDKTEVYKERDRSKNSIFDNKEKENENWRNKGEISEKGSIQKRIQNRRSPLDDDANQRERLADQLNRGQLECLVCCEWIRQNDYIWSCSNCYHVLHLKCVKKWAKSSQADNGWRCPACQNVSITIPNEYFCFCGKTRAPEWNRRDVAHSCGEVCGRTLSKNTCPHKCTLLCHPGSCPQCVAMVTRYCGCGKTSQTVQCSAHKLLLCDDTCDKDLNCGTHKCEKKCHHGECPNCEKTVEQVCYCGKDKRKITCQSNILLTYSCKSVCGKLLDCGNHTCAKLCHPDDCDPCSLTPEKVTTCCCGQTPLTEKRQTCLDPIPVCDKVCSKSLKCGQPNNPHICKATCHEGDCPICDLTTDVKCRCGNMDREIACKDLISKADDARCEKRCTKKRSCGKHKCNQLCCIEVEHVCPLMCSKTLSCGKHKCEQTCHKGRCQPCWRSSFEELYCECGAAVIYPPVPCGTRRPVCDRSCSRQHSCGHEVFHNCHNEPTCPPCTVLTQRWCHGKHELRKAVPCHFNGISCGLPCNKPISCGRHKCLAICHPGQCEKPGQQCSQPCTIPREMCGHICAAPCHDGKCLDTPCKEMVKVTCQCGHRTTSRACAENSKEYQRIASSILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECKLIERNRRLALGLQIVNPDLSGKLMPRYSDFMKQWAKKDPLFCQMVHEKLTELVQLAKTSKQKSRSYSFDSMNKDRRHFIHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEIVQRKNGQRKVPGPMLNTSKANGSVKTILSLPTKKNQKVEIQSNTKMPEPEPEPELEPEPEIDYFDYKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00867078;
90% Identity: iTF_00863650;
80% Identity: -