Basic Information

Insect: Lasioglossum malachurum
Gene Symbol: -
Assembly: GCA_028455605.1
Location: CM052312.1:3313307-3319374[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 5.7 8.1e+03 -3.3 0.1 28 40 123 135 123 138 0.64

2 5 8.8e-13 1.2e-09 37.7 0.0 1 39 356 395 356 399 0.90

3 5 2.7e-12 3.8e-09 36.1 0.1 2 39 411 448 410 451 0.94

4 5 9.8e-19 1.4e-15 56.7 0.0 2 45 466 510 465 510 0.97

5 5 1.1e-18 1.6e-15 56.6 0.1 1 42 517 559 517 560 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	5.7	8.1e+03	-3.3	0.1	28	40	123	135	123	138	0.64
2	5	8.8e-13	1.2e-09	37.7	0.0	1	39	356	395	356	399	0.90
3	5	2.7e-12	3.8e-09	36.1	0.1	2	39	411	448	410	451	0.94
4	5	9.8e-19	1.4e-15	56.7	0.0	2	45	466	510	465	510	0.97
5	5	1.1e-18	1.6e-15	56.6	0.1	1	42	517	559	517	560	0.97

Sequence Information

Coding Sequence: ATGTCCGACGACATTTTCCGCTACAACATTCTTCCAAAATATTTCTGCAAGCTCGCTGTCTCGCTCTGCACTGAACTGCAGTCTCTGCGAAACCGCCGCAGCCGATACAATTGGACGATGTCCGAGGACATTTTGCGCAACAACATTCTTCCGAAATATTTCTGCAAGTTCGCTGTATCGTTCTGCACTGAACTGCAGTTTCTGCGAAACCTTCGCAGCCGATACAATTGGTCTAGAGAACGTCGGTCATTATTGAAAACGGCAGATCAGCTGAAGATCAAGGGGCTGTGCGAGGTGCCGGAGAGCAGGGACGGTCCGCCATCGGTGAGTCTGAGCTCGCCACCACGGGAACCGGGCACTCCCAGGATAAATTTCAGCAAGTTAAAGAGGCGGTACAAACGAGCGAGGACCACGTTCGAGCCTCGCGCCACGGATTCGAGGCACTACGACAGATACAAAGAGGAGGAATCGAACGGGAATTACAATCCGGAGAACAAAGAAAATCACAGAGACTGGCAGACCGAAGATGAAGATTGCACGGAGGCCACAACAGCAACAGTAGTCTTGGAAACGTGCCAACGGACCAATAATAATAACAACAATAATAACAACGGTAACGGTGCGAACAACAATAACAACGGTGACATGTTCTGTCATACAGGTCTCGGACACTATGGACACCATCCGGATCCTGGGGAAGTCGATCTACCCCCAGAGACCCAGCCCACCCCACCTAGCGCCACATTGGTCGGCACTACGATCACCCACCTGAGGGATCCGGATCACCATTCTACAGAGATTCAGAACTGTGACAGTGTGAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCGGACACAATCGACATCGACAGCCACATGTCGGACCGGGCGAGTGTCAGTTCGAAGAACGCAGCGGACAGCGACAACATGATGATGATCACGCCGGAGCTGCTTGGTTTAATGCCCTCTGGAAGTTCCGTCCACTCGGATTCCGGTGAAAACAACTCGAGAGGCCATTCGGGACAGTCGAGCTCTCATCATCACGGTTCGAAATCGTGGACCCAGGAAGATATGGACGCCGCTTTGGAAGCTTTAAGGAACCATGACATGAGCTTAACCAAAGCCTCCGCAACCTTCGGCATACCATCGACGACATTATGGCAAAGAGCGCACCGGTTAGGCATAGACACACCAAAAAAGGATGGACCAACGAAATCGTGGAGCGACGAAAGCCTGAACAACGCCCTCGAAGCGCTGAGAACAGGCACGATCTCGGCTAACAAGGCGTCGAAAGCGTTTGGAATACCTTCGAGCACGTTGTACAAAATCGCGAGGAGGGAAGGCATCAGATTGGCTGCGCCGTTTAACGCCAGTCCAACAACATGGTCGCCCGCTGATCTGGACCGCGCTTTAGAAGCAATAAGGTCTGGTCAAACGTCTGTGCAGAGAGCTTCCACCGAATTCGGTATTCCAACAGGGACCTTGTACGGTAGATGTAAGAGGGAAGGAATCGAATTGAGCAGAAGTAATCCTACGCCATGGAGCGAGGATGCTATGACAGAAGCACTCGAAGCCGTCAGACTGGGACACATGAGCATCAATCAAGCAGCCATTCACTACAATCTACCCTATTCGTCGCTGTACGGTCGGTTTAAGAGGGGGAAGTACGAAGAACCTGCAGTCGGTGATCTATCGCAAGACGGGAGCAATCCACATTTTCATCAAAGTCCGAATCAGAATCATTCGTCCGCCGTTCCCGATCAAATGCCCTACCAAGGCAGCTGA
Protein Sequence: MSDDIFRYNILPKYFCKLAVSLCTELQSLRNRRSRYNWTMSEDILRNNILPKYFCKFAVSFCTELQFLRNLRSRYNWSRERRSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFSKLKRRYKRARTTFEPRATDSRHYDRYKEEESNGNYNPENKENHRDWQTEDEDCTEATTATVVLETCQRTNNNNNNNNNGNGANNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDLSQDGSNPHFHQSPNQNHSSAVPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_00306165;
80% Identity: -