Lfig004370.1
Basic Information
- Insect
- Lasioglossum figueresi
- Gene Symbol
- Zfy1
- Assembly
- GCA_028455805.1
- Location
- CM052191.1:1700367-1707177[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.011 0.98 10.2 0.8 1 23 114 136 114 137 0.96 2 16 3.1 2.9e+02 2.4 4.7 1 23 143 165 143 165 0.97 3 16 0.03 2.8 8.7 0.5 2 23 171 192 170 192 0.97 4 16 0.0024 0.22 12.2 3.1 2 21 445 464 444 464 0.95 5 16 2 1.9e+02 3.0 1.0 1 23 532 554 532 554 0.82 6 16 2.5 2.3e+02 2.7 0.1 3 23 762 782 760 782 0.93 7 16 0.0046 0.43 11.3 0.3 1 23 790 812 790 812 0.98 8 16 0.051 4.8 8.0 1.0 2 23 908 929 907 929 0.95 9 16 1.3 1.2e+02 3.6 3.8 1 23 1010 1032 1010 1032 0.96 10 16 0.0087 0.82 10.5 0.3 1 23 1038 1060 1038 1060 0.98 11 16 0.032 2.9 8.7 0.3 1 23 1130 1152 1130 1152 0.97 12 16 4.6e-05 0.0042 17.6 0.6 1 23 1158 1180 1158 1180 0.97 13 16 0.0047 0.44 11.3 2.6 1 23 1228 1250 1228 1250 0.97 14 16 0.00077 0.071 13.8 1.7 1 23 1256 1278 1256 1278 0.99 15 16 0.083 7.8 7.4 0.9 2 23 1370 1391 1369 1391 0.97 16 16 6.1 5.7e+02 1.5 0.5 2 23 1399 1420 1399 1420 0.81
Sequence Information
- Coding Sequence
- ATGTCAGGAAGGCTGCCTCGTCTTCGTGCACTTCGTCCGCGACCTCAGCAATCCAAGGAAAAAGAAGGTAACCTTAAAGAAGATCTTAAGGAAACCGCGATGAAGGAGCAACAGTCGCGAACCTCCGCCGAGGAGCTTTCGTTTGAAGACAAAGACGATGATTCCGCGAAGGACAGTTTAAAGGGCGATCAAGACGACCTCGTTGATTGCACCGGATCCTCGCAGGGCTACGAATGTAAAACCTGCAAACCTCCAAAGCCTCTTCCGATTCTAAAGGCTTACCTCGACCATTTAAAAAAGGAGCACAAACCGAAGGGGAAATTTGCACGCGACGCTGGATACAGATGTTCAATGTGTCCGTATGTTGCATTAAATTCGAGAGACCTCGAAACCCACCAAAGAGTGCACCATTTGAAAAGGAGATTCTTTCGATGTTCCAAATGCTCCTATGTAACGCATGTACGTGCTCGTTACACGAAACACGTGAAGTATCATTCCATGCCAATGATCAAGTGCGACGCCTGTGATTTTCGTACGCCGTACAAGTGGAATTTGGACAGACACACTAGGAACCATGGAGGGGGGGGGGAGCTTTTCAGACAGACAAATCGCAAGTCTAATGCACCTTTTGAGCGTAAGCCGAGAAATAGTCCTAAGCGTTACAATCAGGTGGGTGCGAGCGATTTCCGGGATACGCTTCACATATCCGGGAGCACGACGGTGTCCCTTAGTCTCGGCGACTCGTTCATGTCCGATCAATCAATGAATTCTATGGAAGATAAAAGAAGTGCAATAGCGAATGCAGAATGCATAGCGTTGAAATGCGAAGAGAAGGGCTGTCAGTTCATTACCGCCTGGGATTCGGAAATGCAGAGACACCTGGCAGAGTGTCATGCACCGGTTACACCGAATAAGTCTCGAAAACCATTGCCAATGTTGATTCCCTTGAGTCCTGCTAAATCCAATAATACTGCCAGTGGATCCTCCACAACACTGTTAAAAGTTCCACGCGTAAGAGTACGGCCGGAACTCGCTCAAATTGCCAGAGATACTGAACTGGCTAGGTTGTATGGGAATAAAGAAGTCAACAACTTAAAGAAGGATGCGAATAACGCGGCAGATTTGTTTGAAAAAAAAAATGCGTCCTTCTTTGATAAGCTAAAGGAAAAGCTTACTACGTCGGCGTCGATAAATAATGGAGTGGCGGAGGTAGCAGTAAGTACCACGAACGATTTGAAATGCTGGTGTACATTTAAAGCTAGTAGCATGGAGGAGCTGGCTTGTCACAAACAAACACACCACACTGCTCTCAGCGTATCTGTGGGCACGACGCGTTGCCCAAAGTGCAGAAGACGTTGCAAAAACTCGACTGATCTACAAACGCATATGCAGTGTTGTCGCTTGGCGAGCAACGATTCGTCCATAGACAGTAGCTTAGAAAAATTATCGAATTGTTCAGAACTACGTGTGACCTCGTATCGCGGTGAATATGCATTCCCAGCGCAAACGGATTGGGACGTAAATCTCAGTGGACTCAATTCTTCTGGATCATCGGTTGAAGGCACCTCAGCGCATCCAAGTGGCCGACGGGTATTCAAATGCCCGCATTGTCCATTTTGGGCATCCACCGCAAGTCGCTTTCACGTTCATATAGTCGGTCATTTAAATCGGAAGCCATTCGAGTGTTCCCTGTGCGCGTACCGCTCTAACTGGCGGTGGGACATCACAAAACATATTAAACTTAAAGCAGCTAAAGATCCAGTTCATATGACTGCCAGGGTACTTATGACGGATGAAACCGGTCGACGGAATTATTCCAAGTATAACAAGTATCTTGCACAGGTGGAGCAACAATCATGGGACGAGCAAAATATGGAAGAGCGTAGCGTGGAAGAGACTAATTCCAATGAGCCACCGACTAAGTTGTTAATTATGAACAGTAACGAGTATTTGCAAACTCCGGAATATAGTTCCACTCCGGTCTCGATTATGTCCACAAGCGAAGGGAGTAATGTTAACACTATCAATATTGGCCTAAGACCACCGCCTCCGCTAAAAGCTGCCGCTCGAAATCGTGGTCAATCCTTGCTAAAAAATAACTTGATCTCACCACATGGACAGAGTGGATCCCCTTCCGCTACGCTCTCCGCAGACAATAAACGTACCATGTGGAAATGTAAACGTTGCAACTTTAGACATTCGAACAAAGAGACTGTATCTTTGCATGTCAAGTCCCATAATGAATCGGAGCAACGCAACGAAGAGGAAAAAAATCCATTCGGTTGCGGAGATTGCCCATTTTCCGCGCCAGACGCTGCAACTTTGTCCATACATAGAGTCCATCATCGCCCCAACTTGGAAGCCATTTTCAAATGCTATCTGTGCCCCTATTACGTCAGCACAAAAGCGGAACTTTTGGATCATGTTAGGCTCCACGGTGAGGAGCTCGCGGTCGTGCACCAACAGAGTACGGACTATAATTTTTCTTCGTCTAAATATAAAGGGCAACAGACTAATTCTGATAACAGTAATAGTCGCATGAAACAGGAGAGGTCTATGGAACAGGTGATCCACATAACCACGCAGAACAACGTAACCTGCATATCGAACGCCTCGAAGAACGCCAATGCACCGCCGCCATTGCTGTTAGATACGCGATCACTGCCAGACGCGCCGTTGGTCTGGGTGTCTAGACTTGATGGAACCCTCGCGAAGATGTTGAAATGTCGTCATTGTCCGTACGTGTCTTCTAGACGCGCGGAGGTCCGTGATCACGAGACAATGCACCTCGACACTCCCAGTCAAGGGCCCGTCATCGCTTGCACGGACTGTAGCTTTACCTGTACCTGTCGAGAAATCATGGTCGCCCACACGGAAATGCATTCCGGGTCGTTGGGTACCGTTCACTGTTTGGTGGACGACACCAGACCTGACTCTCAGCAACTGAGCGACTTGACCACGCTTCTTGGATTTACGCATACTCCCGCATTAGGTTCGGAGCCCGATCTGCGCGACTCCAGGTTGGTGCATTGTTGCAGCAAATGCCCGGCACGGTTCCTCTACGAGAAAGAACTGAGTATCCACTTGCGGTACCATTCCACGGAGTTGGCGTACTCGTGCCAATGGTGTTCGTACGCCGCTCGCCAGCTGGCTCATCTATTGGCCCATCAGAAGGCGCACTCGACGGAGTATCAGGAGCGTACGAAGTACTTATTGTCTCTGTACGGTCACTCACAACGATATCCACCTCCCAACACGGCTTGCGTCGAAGCAGGCGACCAGGAATCGAGTCAGAGTTGCACGGTCGCGTGGATTGTCGTCGAGGTCTCCGAGACCTCGGGCAACGGCTTTAACAATCCGAACCAACCGAGGACCGGGAACCAAGTGTTCACCTGTGCCAAATGTCCTGCCCGTTACTTTAAGTTAGATGCTCTGGAGTACCACATGACGCTACACGGATCGAACAACAGATTCAAATGCACCGAGTGCGACTACTCCTCGAAGACTGCTCAGAATCTGGTAAAACACCAAGTGGTTCACCGACGACAGAACGAGACTAGCGAGATTGCCGCGAATCTATCGCCGCCGCCCTCCGACCCTCAGTTTGGACTGTTCATGCGAGGCAACCCGAACTTCGTCTATCCTGGTTACCTGAGAAACGGCAGACTGAAAGAGAAACGGTACAAATGCCACAAGTGTCCCTCCGCGTTCGAGAAGCGGGAACAGTATAGGGTTCATCTGACGTTGCATGGCGCGAAACAGAGATACCGTTGCGACACCTGCGACTATTCCGTCAAATACTACGCGAATTACATTCAGCATCTGAAGAAACATCAAGCGAACGCGGAGGCTCAAGCCTCGCGCCGGCAATTCGAGGACGACACGATCACCATCGACAGCGACACCGTCTCCGAAAACGTGGCGTCCGTGTCCCGATCGGGGAAGACTCTCAAGTCGTCCTGCAGCTCATCGGCCGCGGTGTCCTTGAACGGAACCACGATGCTAAACTACGGCGGCATGCAAGCCTCCAACCAGGACAAACAGTCGTTGATACTGATGCAGAAAAAGGGTATGCTCGTGTCGCATAACGAGGAGACTGAGACGTTACGCTGCCAGAGCTGTCCTTTCTCGACCAGCGACAAAGATGCCATGGACTCCCATAAACGCCGTCACGGTATCGAACGAGTGACACCGTCCTGTCCCCATTGCGATTACAGACCGAGAAAAGATGAGAATATTGGCGAACATATCAGGCTGCACTTCACTAGACTTTACAAGCCTGAGTCCTATCTAATCATAGAGTTCTTAACGTTAACTATGAAGAAACCATCCAACAATGGAAAGGAGGAGAAACAGAAGTCGACAGAACTATTGTTTAAAGAATATCAAGACGGAAGATTCTTCCCCCTTAACGATACTAATTCGTTCGGCAACAGTCCGAACGGAAATAGCTGTAAGGAGAAAGTTTTAGTGGATCCCAATACCGGAGAGACGAAACATTTGACAGTTTAA
- Protein Sequence
- MSGRLPRLRALRPRPQQSKEKEGNLKEDLKETAMKEQQSRTSAEELSFEDKDDDSAKDSLKGDQDDLVDCTGSSQGYECKTCKPPKPLPILKAYLDHLKKEHKPKGKFARDAGYRCSMCPYVALNSRDLETHQRVHHLKRRFFRCSKCSYVTHVRARYTKHVKYHSMPMIKCDACDFRTPYKWNLDRHTRNHGGGGELFRQTNRKSNAPFERKPRNSPKRYNQVGASDFRDTLHISGSTTVSLSLGDSFMSDQSMNSMEDKRSAIANAECIALKCEEKGCQFITAWDSEMQRHLAECHAPVTPNKSRKPLPMLIPLSPAKSNNTASGSSTTLLKVPRVRVRPELAQIARDTELARLYGNKEVNNLKKDANNAADLFEKKNASFFDKLKEKLTTSASINNGVAEVAVSTTNDLKCWCTFKASSMEELACHKQTHHTALSVSVGTTRCPKCRRRCKNSTDLQTHMQCCRLASNDSSIDSSLEKLSNCSELRVTSYRGEYAFPAQTDWDVNLSGLNSSGSSVEGTSAHPSGRRVFKCPHCPFWASTASRFHVHIVGHLNRKPFECSLCAYRSNWRWDITKHIKLKAAKDPVHMTARVLMTDETGRRNYSKYNKYLAQVEQQSWDEQNMEERSVEETNSNEPPTKLLIMNSNEYLQTPEYSSTPVSIMSTSEGSNVNTINIGLRPPPPLKAAARNRGQSLLKNNLISPHGQSGSPSATLSADNKRTMWKCKRCNFRHSNKETVSLHVKSHNESEQRNEEEKNPFGCGDCPFSAPDAATLSIHRVHHRPNLEAIFKCYLCPYYVSTKAELLDHVRLHGEELAVVHQQSTDYNFSSSKYKGQQTNSDNSNSRMKQERSMEQVIHITTQNNVTCISNASKNANAPPPLLLDTRSLPDAPLVWVSRLDGTLAKMLKCRHCPYVSSRRAEVRDHETMHLDTPSQGPVIACTDCSFTCTCREIMVAHTEMHSGSLGTVHCLVDDTRPDSQQLSDLTTLLGFTHTPALGSEPDLRDSRLVHCCSKCPARFLYEKELSIHLRYHSTELAYSCQWCSYAARQLAHLLAHQKAHSTEYQERTKYLLSLYGHSQRYPPPNTACVEAGDQESSQSCTVAWIVVEVSETSGNGFNNPNQPRTGNQVFTCAKCPARYFKLDALEYHMTLHGSNNRFKCTECDYSSKTAQNLVKHQVVHRRQNETSEIAANLSPPPSDPQFGLFMRGNPNFVYPGYLRNGRLKEKRYKCHKCPSAFEKREQYRVHLTLHGAKQRYRCDTCDYSVKYYANYIQHLKKHQANAEAQASRRQFEDDTITIDSDTVSENVASVSRSGKTLKSSCSSSAAVSLNGTTMLNYGGMQASNQDKQSLILMQKKGMLVSHNEETETLRCQSCPFSTSDKDAMDSHKRRHGIERVTPSCPHCDYRPRKDENIGEHIRLHFTRLYKPESYLIIEFLTLTMKKPSNNGKEEKQKSTELLFKEYQDGRFFPLNDTNSFGNSPNGNSCKEKVLVDPNTGETKHLTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00762862;
- 90% Identity
- iTF_00861512;
- 80% Identity
- -