Basic Information

Insect: Lasioglossum calceatum
Gene Symbol: -
Assembly: GCA_963966675.1
Location: OZ016542.1:16314086-16320212[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00013 0.014 16.4 2.1 1 23 506 529 506 529 0.97

2 17 0.0031 0.34 12.0 0.7 2 23 562 583 561 583 0.94

3 17 8.4 9.1e+02 1.3 2.3 1 22 720 741 720 741 0.94

4 17 0.018 2 9.6 1.4 1 23 748 771 748 771 0.90

5 17 8.4 9.2e+02 1.3 3.9 1 22 781 802 781 804 0.89

6 17 0.96 1e+02 4.2 0.1 2 19 827 844 826 847 0.90

7 17 0.61 66 4.9 5.3 1 23 854 877 854 877 0.93

8 17 0.0059 0.64 11.2 2.5 1 23 888 911 888 911 0.94

9 17 0.17 18 6.6 0.1 1 21 944 964 944 965 0.95

10 17 0.0042 0.45 11.7 0.1 1 21 1057 1077 1057 1078 0.95

11 17 0.0036 0.39 11.9 3.1 1 23 1085 1107 1085 1107 0.98

12 17 0.016 1.7 9.8 1.7 1 23 1117 1140 1117 1140 0.94

13 17 0.065 7.1 7.9 0.1 2 21 1177 1196 1176 1197 0.93

14 17 0.0044 0.49 11.6 3.1 1 23 1204 1226 1204 1226 0.96

15 17 3.5 3.8e+02 2.4 0.2 1 23 1235 1258 1235 1258 0.86

16 17 0.15 16 6.8 0.3 1 23 1394 1417 1394 1417 0.96

17 17 0.00096 0.1 13.7 0.0 3 23 1440 1461 1440 1461 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00013	0.014	16.4	2.1	1	23	506	529	506	529	0.97
2	17	0.0031	0.34	12.0	0.7	2	23	562	583	561	583	0.94
3	17	8.4	9.1e+02	1.3	2.3	1	22	720	741	720	741	0.94
4	17	0.018	2	9.6	1.4	1	23	748	771	748	771	0.90
5	17	8.4	9.2e+02	1.3	3.9	1	22	781	802	781	804	0.89
6	17	0.96	1e+02	4.2	0.1	2	19	827	844	826	847	0.90
7	17	0.61	66	4.9	5.3	1	23	854	877	854	877	0.93
8	17	0.0059	0.64	11.2	2.5	1	23	888	911	888	911	0.94
9	17	0.17	18	6.6	0.1	1	21	944	964	944	965	0.95
10	17	0.0042	0.45	11.7	0.1	1	21	1057	1077	1057	1078	0.95
11	17	0.0036	0.39	11.9	3.1	1	23	1085	1107	1085	1107	0.98
12	17	0.016	1.7	9.8	1.7	1	23	1117	1140	1117	1140	0.94
13	17	0.065	7.1	7.9	0.1	2	21	1177	1196	1176	1197	0.93
14	17	0.0044	0.49	11.6	3.1	1	23	1204	1226	1204	1226	0.96
15	17	3.5	3.8e+02	2.4	0.2	1	23	1235	1258	1235	1258	0.86
16	17	0.15	16	6.8	0.3	1	23	1394	1417	1394	1417	0.96
17	17	0.00096	0.1	13.7	0.0	3	23	1440	1461	1440	1461	0.96

Sequence Information

Coding Sequence: ATGGCTCGAGTTTATGTATATGAACGTCCAGTCGATGCTGTCCTAGCAGATGTGTCCTTCTACGAGAAGCATCACcttgttACTGGGGTACGGGTGAAACAAGAGCCACGTGACACGGATGATAAAAGTCAGGACAGTACTTTGCCATTTGCAAATATTAATGTAAAGAGTGCCACATCGGCTGAAACGACTGTTCAAGGGACGCAACTGGTGGACGTTGTAAATAACAAGGAGAATGAGCTTGTATCATCTACGAACCGTGCCGGTAAAGGCAAATCGGATACGGACGAGGTGAATACGAAGAAGCGTAAACGTTTAACATTTAAGAATTTGAAAAAGCCGAAAACGTTGTCCGAGCAAGTGTGGCGACAACATAAAAGGGCCTGCCGTAGTAGCCTTGAACGTAAACCTCCGGAACCAGTCGGCAAAGAATTAGAAATTACGGACGTAGAATGCGATAATATTACAAGTGATGCCAGTGAAACTGATGAAAACAGTGAAACGGATACGACCAAGGAGACCGATAAAATCAGTGAACCGCCATTGACAGAGCGCACTAACGGTCACGTAGAACATCCTTTTGtacagaagaaagaaaagagtcCAGCCGATAGTCCTACCAAAAGAATGAGACAGACAACTATGACAGAGTTTCTTTCAGGATTCAAGAGAAAAGAATACGGTTCTCCAAAAAAGGTTGATCCTACAAAAGAAACCCCGAAAAAAGTAAGTGCTGGACAATCAGGAAGAATAACGGAGAAAGTAGGGGAGACACCGAAAAAAGCCACGCCTAAACAAAATGGAAGAATAACAGAGAAATTCAATTTCTCGGCAGAAACTCCGAAAAAGGTTAGACAAAACGGAGCAGTAGCAGAATTCGTTTCCACTCCCCGTAATAAGAAAGCGCCGACTATTGGTGAAAGTTCTGGGTTAAGTAGCAAAACTGGCAAGGAGAAAAAACCATTTGTCGAGATACACATGGGTTCTGATGAGATGGTGGCCTTATtgcatacaaaaattaaaatcgaACCAGAAGATGAATGTATCAATCCTACGCCACAGAATGGATCCTACAACCTTAGACGCGTGACAAGAAATAGTCTTGATCGACCGCCGAGTGACGTGAATACACGGCTTCGTGTTCATAGAAAACGTAATTGTAAAGGGAAGTTCCTTGCCCTGCCTAATGAGATATCGAAGGCTCGGTCGAAGGAGCAGCTGCTGATGGCCAAGTTCAAATGTAAAGACTGCAAAGTTAATCTAGTTAAATGCGACATGGTTGTCAAAACAGAAATTGTCGATTATGTCCCGTCGACTCCGGTAAACGTAGATGATGATATCGAGGAGGTTTGGAGAAAGAAGGTTAACTTAAAGAGAATCCACGTTCCATTGGTTAGACTGAACAAGCTGATAAAAGTAGAAGTTAACGATACGTTTCAATCATCAAATCGAGAGAACAATCCAGAGAAGCCCAATGCATCTCAGCCTAATGTCAAAGCTAAATTGCGTAAGATATTCCGGTGTAAAGTCTGCTGGAAATACTTCTCCACGAAGGAGAAGTTATACGAGCATTTGAAAGTTACTCATGTGTTCTACATATCGAGCGTGTGCAGCGCTTGGTACAAGTCCCGAGCCAGATTGCTGAGACACTATTTGCACCAGCACTGCGTTATGAAACGCATGGAGTGCTGCGTGTGCTTCGAGAAATTCGTGTCGCCTGTGTTGTTGAAGCGGCACATGGGTCTGCACTGCGTCAAGGTGTTGCAATCGAAGAGCGATAAGGTGTTCAACAAAGAGGCGGTCAGGTGTAATGTGAACTCCAGGACGAACTCGTGCGGGGCGTGCGGTAAGCAATTTTGGTTGGGGGCTTGCTTGAGCGAACATCAACAAGTGTGTCATAAGATAAAGGCGCAATTGCAGAAATCACAGAAAGCGCCGTGTCCCGTGAAAACGTCCCCAACGAAAAAAACGCTTGAGTCACCGTTGGCTGTTACAAGCGGTACAGTGACCGAGCAGCATCCCATCAAGTTATCCCCTGTCAAAAATCATCCTCGTGAAACTGAATCACTGTCGGTAGTACAGCCGAAAAGATTGCTGAAAGGCGTCGCGCTCGCGAAGGGGTACAACATCGACAATACCAGCACGAGCAAGGAGAAGTTCTCCTGCACCACTTGCAGTGCGCAGTTCCTGACTTTCCAGAATTTATGCTTGCACGAACGAACTTTCACTCAAGCCGCTAAGTACGTCTGTGGGTGCTGCAATACCGCCTTCACCACACAGAAATTATTGCAGAACCACGTCACAGCCACCCACATGCTCGATACTCTAACGAAGTACAAGTACTTTTGTACGTTCTGCACACAGGGCTTCCTAAAGAAGATTAATCTTCAGACCCACACAGGACACTTCCACAATGGTCAAACGCCCATCATTCCCAAACCGTGGTTGGATACTACTTCCGACTGGGAGGTGAACACGGTGTGCAACGTTTGCAATCTGATATTCGAGTCCAGCGAACGGTTCATCGAGCACAACATGTACTACTACAAGGGACAGATGTTTACCTGCACGTTCTGCAACCAAACCTTCCATGGAATGTACATGCTGAACCATCACAACAAGTTGGTGCACTACACGGAGGACATGGCGAAACAGTACCCGTACATGTGCAACATCTGCAACGAGGGTTTCACCCAGGACTCCCAGTATCACGCGCATAAATTGCACGTTCATTCGGCAGCGCCCGAAACCAGCACACAGTCTCTGCAAGATCACACTTACGCCATCACGGTTGGGATCGGAGGATTGACGAATGGACCGACGATGAAATACAACTGTGAGGTTTGCTACATGAACTTCATGGTCGAGGAGGACCTACGGCAGCACCAGTTGGAGTACTCCAATAATGGTGACTACCTATGCAGCTACTGCGCCAGAAGATGTCCTACGGACAGTATCCTCAGCAAGCACGAGAGTTTGTCGCACACTTGTGGCAATTTCACCGACTGCTACAAGTGTCGCTACTGCGAGGAGGTGCTTTCCACGTGTACAGCGTTGAAATGCCACGAAATACACTTCCACCAAAAGATCTCTAATCCCCAGACGAGCAACGATAATCAGCCAATCGCGAATCAGAGTGCAAAATCACCTGGAAACGTTGGGGACCCATTCGTCTGCGCGATTTGCAGCATGAAGTTCGTTACTTTGGAGAAATTGAACCATCATATCTTAGAATATTCGAACGTTGGTATGTACAGTTGTCACATCTGCAGCCGGAGGTTCTCCGAGCTGTATCGCCTAGAAGTCCACAAGCTAAAGCACTCGAACTTGAACTTCATATTGTCTAAGCATCACTGCCCCATATGTCGTGAGGGATTCGCAAATCCAGTCAACGTCCAAATGCACGTGATGCACTTCCACAAAAGCACAACGACCGATCAGTTGGTATCAAAGGATGCGCAGACCTTGCAGGCAGGCGACCTAAACGTCGAGTCGGCCTCAAACAGTCCGTCTAAGACCAAGTCGACAACGTGTCTTGACTGTTTGGTGTCGTACGATTCCGAGAGTGCTTTGAAAAGGCACCAAGCACGCTTCGCAAACGAAGGGCTACATGCCTGCGAGCACTGTGGCAGGAGGTTCCAAGCCGTGAAACTGCTGAAGGAACATTTGAGGAGGCATGCTGCAGGCATTGAACGCCTGAGGTACGCGTGTTCCGAATGCGACGATAGATTTGGTAATCCGGTGGCCAGATATCAGCATATCGTTCATCTTCATGGAAAGAGTAAGTGGAAAGGCGACGTACCTAATGCCATAGCGGCTCGCCAGGATGCTGAAGTTGCTGCTAAAAAATTAGAGGGTGCGGATTTCGGTGTATCATTGCTTCGATCAGACACCCCAACGTATTACACTGGTGAACCTATTGCTACAGCCAGCCCGGTGGACGGATTAAGCGATGGTCAGGGGAGATCATCATCATCAACTGATCAGCTGATTTACGCTGGTGAACCTCGAGCGAACCCCACACTATCAAAAATTGAATCTATGCCTGCTGCCAGTCACGTGCACGCATTAAGCGATCCTCAGGGAAGATCCTCATCATCAACTGATCAGCAGGCGGATATGACTACAGCGGCAGCTAAGCAAGAGACACTTGAAAATTTAAAGGGGACGACTACGTGCTACGTCTGCCCCCTCTGCGACTCCAAGGTCCAAACGCTGGAAAAATTTACGTCACATTTGAAACTGGTACATGATGGGAAGATAATCCAGGGGACCATATGCGACAAGTCGCAGTCTTTGACTGGAGGCGTCATCGGCTGCTTGATCTGCGGAGTCATCTTCACCACGGAAGACGATCTCAAGATACACCTCAAGGAAGCGCATGTGAAGATTTGCCCTGCCAACATGGAAGACGCTGCCGATTCTGCGGAGAACACAGATGCCGTGGAAATCGTTTGGGAGAAGAAGCTGAACGCTGCCAAGCTGAGTGAGGACCAGAGCGACTCGGAAGTCCATGTTCTGTGCTCAAGTTACCGCGCCCCGATCATGAACTATGACAAAACTGTTGCGAATACGGAATCAATGGATTTAAGTGTTGATGATACATTTCTCAAGATCAAAGACTTTGCCAAATTGGTGTAA
Protein Sequence: MARVYVYERPVDAVLADVSFYEKHHLVTGVRVKQEPRDTDDKSQDSTLPFANINVKSATSAETTVQGTQLVDVVNNKENELVSSTNRAGKGKSDTDEVNTKKRKRLTFKNLKKPKTLSEQVWRQHKRACRSSLERKPPEPVGKELEITDVECDNITSDASETDENSETDTTKETDKISEPPLTERTNGHVEHPFVQKKEKSPADSPTKRMRQTTMTEFLSGFKRKEYGSPKKVDPTKETPKKVSAGQSGRITEKVGETPKKATPKQNGRITEKFNFSAETPKKVRQNGAVAEFVSTPRNKKAPTIGESSGLSSKTGKEKKPFVEIHMGSDEMVALLHTKIKIEPEDECINPTPQNGSYNLRRVTRNSLDRPPSDVNTRLRVHRKRNCKGKFLALPNEISKARSKEQLLMAKFKCKDCKVNLVKCDMVVKTEIVDYVPSTPVNVDDDIEEVWRKKVNLKRIHVPLVRLNKLIKVEVNDTFQSSNRENNPEKPNASQPNVKAKLRKIFRCKVCWKYFSTKEKLYEHLKVTHVFYISSVCSAWYKSRARLLRHYLHQHCVMKRMECCVCFEKFVSPVLLKRHMGLHCVKVLQSKSDKVFNKEAVRCNVNSRTNSCGACGKQFWLGACLSEHQQVCHKIKAQLQKSQKAPCPVKTSPTKKTLESPLAVTSGTVTEQHPIKLSPVKNHPRETESLSVVQPKRLLKGVALAKGYNIDNTSTSKEKFSCTTCSAQFLTFQNLCLHERTFTQAAKYVCGCCNTAFTTQKLLQNHVTATHMLDTLTKYKYFCTFCTQGFLKKINLQTHTGHFHNGQTPIIPKPWLDTTSDWEVNTVCNVCNLIFESSERFIEHNMYYYKGQMFTCTFCNQTFHGMYMLNHHNKLVHYTEDMAKQYPYMCNICNEGFTQDSQYHAHKLHVHSAAPETSTQSLQDHTYAITVGIGGLTNGPTMKYNCEVCYMNFMVEEDLRQHQLEYSNNGDYLCSYCARRCPTDSILSKHESLSHTCGNFTDCYKCRYCEEVLSTCTALKCHEIHFHQKISNPQTSNDNQPIANQSAKSPGNVGDPFVCAICSMKFVTLEKLNHHILEYSNVGMYSCHICSRRFSELYRLEVHKLKHSNLNFILSKHHCPICREGFANPVNVQMHVMHFHKSTTTDQLVSKDAQTLQAGDLNVESASNSPSKTKSTTCLDCLVSYDSESALKRHQARFANEGLHACEHCGRRFQAVKLLKEHLRRHAAGIERLRYACSECDDRFGNPVARYQHIVHLHGKSKWKGDVPNAIAARQDAEVAAKKLEGADFGVSLLRSDTPTYYTGEPIATASPVDGLSDGQGRSSSSTDQLIYAGEPRANPTLSKIESMPAASHVHALSDPQGRSSSSTDQQADMTTAAAKQETLENLKGTTTCYVCPLCDSKVQTLEKFTSHLKLVHDGKIIQGTICDKSQSLTGGVIGCLICGVIFTTEDDLKIHLKEAHVKICPANMEDAADSAENTDAVEIVWEKKLNAAKLSEDQSDSEVHVLCSSYRAPIMNYDKTVANTESMDLSVDDTFLKIKDFAKLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00865572;
90% Identity: iTF_00860708;
80% Identity: -