Basic Information

Insect: Lasioglossum calceatum
Gene Symbol: -
Assembly: GCA_963966675.1
Location: OZ016554.1:2183394-2188465[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 7.3 1.1e+04 -3.2 0.1 28 40 84 96 84 99 0.64

2 5 1.1e-12 1.7e-09 37.8 0.0 1 39 317 356 317 360 0.90

3 5 3.4e-12 5.3e-09 36.3 0.1 2 39 372 409 371 412 0.94

4 5 1.2e-18 1.9e-15 56.9 0.0 2 45 427 471 426 471 0.97

5 5 1.4e-18 2.2e-15 56.7 0.1 1 42 478 520 478 521 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	7.3	1.1e+04	-3.2	0.1	28	40	84	96	84	99	0.64
2	5	1.1e-12	1.7e-09	37.8	0.0	1	39	317	356	317	360	0.90
3	5	3.4e-12	5.3e-09	36.3	0.1	2	39	372	409	371	412	0.94
4	5	1.2e-18	1.9e-15	56.9	0.0	2	45	427	471	426	471	0.97
5	5	1.4e-18	2.2e-15	56.7	0.1	1	42	478	520	478	521	0.97

Sequence Information

Coding Sequence: ATGTCCGAGGACATTTCACGCTACAACATTCTTCCGAAATATTTCTGCAAGCTCGCTGTATCGTTCTGCACTGAACTTCAGTTTCTGCGAAACCGTCGCAGCCAATACAATTGGTCTAGAGAACGTCGGTCGTTATTGAAAACGGCAGATCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAGCAGGGACGGTCCACCATCGGTGAGTCTGAGCTCGCCACCACGGGAACCGGGCACTCCCAGGATAAATTTCAGCAAGTTAAAGAGGCGGTACAAACGAGCGAGGACCACGTTCGAGCCTCGCGCAACGGATTCGAGGCACTACGACAGATACAAAGAGGAGGAATCGAACGGGAATTACAATCCGGAGAACAAAGAAAATCACAGAGACTGGCAGACCGAAGATGAAGATTGCACGGAGGCCACAACAGCAACAGTAGTCTTGGAAACGTGCCAACGGACcaataacaataacaacaataataacaaCGGTAACGGTGCGAACAACAATAATAACGGTGACATGTTCTGTCATACAGGTCTCGGACACTATGGACACCATCCGGATCCTGGGGAAGTCGATCTACCCCCAGAGACCCAGCCCACCCCACCTAGCGCCACATTGGTCGGCACTACGATCACCCACCTGAGGGATCCGGATCACCATTCCACAGAGATTCAGAACTGTGACAGTGTGAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCGGACACAATCGACATCGACAGCCACATGTCGGACCGGGCGAGTGTCAGTTCGAAGAACGCAGCGGACAGCGACAACATGATGATGATCACGCCGGAGCTGCTTGGTTTAATGCCCTCTGGAAGTTCCGTCCACTCGGATTCCGGTGAAAACAACTCGAGAGGCCATTCGGGACAGTCGAGCTCTCATCATCACGGTTCGAAATCGTGGACCCAGGAAGATATGGACGCCGCTTTGGAAGCTTTAAGGAACCATGACATGAGCTTGACCAAAGCCTCCGCAACCTTCGGCATACCATCGACGACATTATGGCAAAGAGCGCACCGGTTAGGCATAGACACACCAAAAAAGGATGGACCAACGAAATCGTGGAGCGACGAAAGCCTGAACAACGCCCTCGAAGCGCTGAGAACAGGCACGATCTCGGCTAACAAGGCGTCGAAAGCGTTTGGAATACCTTCGAGCACGTTGTACAAAATCGCGAGGAGGGAAGGCATCAGATTGGCTGCGCCGTTTAACGCCAGTCCTACCACATGGTCGCCCGCTGATCTGGACCGCGCTTTAGAAGCAATAAGGTCTGGTCAAACGTCTGTGCAGAGAGCTTCCACCGAATTCGGTATTCCAACAGGGACCTTGTACGGTAGATGTAAGAGGGAAGGAATCGAATTGAGCAGAAGTAATCCTACGCCATGGAGCGAGGATGCTATGACAGAAGCACTCGAAGCCGTCAGACTGGGACACATGAGCATCAATCAAGCAGCCATTCACTACAATCTACCCTATTCGTCGCTGTACGGCCGGTTTAAGAGGGGGAAGTACGAAGAACCCGCAGTCGGTGATCTATCGCAAGACGGGAGCAATCAACATTTTCATCAAAGTCCGAATCAGAATCATTCGTCCGCCGTTCCCGATCAAATGCCCTACCAAGGCAGCTGA
Protein Sequence: MSEDISRYNILPKYFCKLAVSFCTELQFLRNRRSQYNWSRERRSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFSKLKRRYKRARTTFEPRATDSRHYDRYKEEESNGNYNPENKENHRDWQTEDEDCTEATTATVVLETCQRTNNNNNNNNNGNGANNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDLSQDGSNQHFHQSPNQNHSSAVPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_00306165;
80% Identity: -