Lcon025833.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lapara coniferarum
Gene Symbol
-
Assembly
GCA_949316025.1
Location
OX438931.1:18997728-19005999[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 2.8e-05 0.0023 19.1 1.9 1 23 192 214 192 214 0.99
2 29 0.0012 0.1 13.9 2.0 1 23 303 325 303 325 0.98
3 29 0.031 2.6 9.5 0.4 3 21 355 373 353 374 0.89
4 29 0.0001 0.0087 17.3 0.3 2 23 450 472 449 472 0.96
5 29 4.4 3.7e+02 2.8 0.5 1 23 520 543 520 543 0.94
6 29 0.07 5.9 8.4 0.3 2 23 560 581 559 581 0.94
7 29 0.02 1.7 10.2 1.4 2 20 613 631 612 633 0.91
8 29 0.00056 0.047 15.0 3.0 2 23 663 685 663 685 0.97
9 29 3e-05 0.0025 19.0 0.2 1 23 735 758 735 758 0.96
10 29 1.6 1.3e+02 4.2 2.4 1 20 817 836 817 839 0.90
11 29 0.00056 0.047 15.0 2.8 2 23 851 872 850 872 0.97
12 29 0.17 15 7.2 0.5 2 23 884 905 883 905 0.93
13 29 0.0072 0.61 11.5 1.8 1 23 915 937 915 937 0.98
14 29 0.0011 0.091 14.1 0.9 2 23 963 984 962 984 0.95
15 29 7.1e-05 0.006 17.9 4.7 1 23 995 1017 995 1017 0.98
16 29 4.6e-05 0.0039 18.4 3.8 1 23 1025 1047 1025 1047 0.99
17 29 0.0019 0.16 13.3 0.2 2 23 1067 1089 1066 1089 0.97
18 29 5 4.2e+02 2.6 0.3 1 19 1107 1125 1107 1129 0.80
19 29 0.7 59 5.3 3.8 1 23 1136 1158 1136 1158 0.95
20 29 0.017 1.5 10.3 3.4 2 23 1169 1191 1168 1191 0.95
21 29 0.0009 0.076 14.4 1.1 2 23 1214 1235 1213 1235 0.95
22 29 0.72 61 5.2 0.7 2 20 1239 1257 1238 1259 0.92
23 29 0.0031 0.26 12.7 0.2 2 23 1316 1337 1315 1337 0.95
24 29 0.014 1.2 10.6 3.5 3 23 1345 1365 1343 1365 0.97
25 29 0.032 2.7 9.5 1.1 2 23 1376 1398 1375 1398 0.95
26 29 1.1 92 4.7 4.4 2 23 1415 1433 1415 1433 0.90
27 29 0.55 46 5.6 0.9 2 20 1437 1455 1436 1457 0.92
28 29 0.51 43 5.7 0.9 2 23 1506 1527 1505 1527 0.95
29 29 0.0024 0.2 13.1 0.4 2 23 1538 1560 1537 1560 0.96

Sequence Information

Coding Sequence
ATGGCTCTTGAACTCGGGAAATGCAGACTATGCCTCAAATTGGGCGATTTCTACTCCATCTTCACGGTGGACAATGGGGTCCAACTGGCAGAGATGGTTATGGAATGCTCTCGGGTGAAGATATACGAAGGGGATGGACTACCAGACAAAGTGTGCTCAGAATGCATACAGAAACTCAGCGGCGCGTATATTTTCAAACAGCAATGCGAAAGAGCAGACCAAGACCTGCGTCGAAACTATGTTCCACCACCAGGTTTCGAGTTGTCACCAAATCGTCAGAGCAGCGATTCTGCCTTCTCCACTCACACGGAATATTCTAACGTGAACAAATCCATATCCACTGAAGGGAAAGTGACAACGGCGAGTACCGACCGCAAACGAAGAACCGGCAGCGATGTCAACGACGACCGCCATGACTACCGCACCAATACTAAGCGCGAAAGCCTTACGACGCCAAGCAAGAAACCAAAATATATGAACACTTCCATGGACACTGATGACGATGACAATGGCGGCAGTCTAACAGCTGAGAGTGTCTGCACCGAACCTAACGAAATAACCCCAAAAAACGAGTTCAAATGCACCAAATGTGCAAAAGAATTTAAGACGATTTATGGTTTGAACAACCATATGAGATCCCACCGTATGGACAAATTGGAGGGGACGACGACACCGACCAGTACGGCGCGGGGGCGCAGCATCGAAAGCGACAATGCTTCATCAAGCAGCAGGCAAGACTATCCAAGCAGCACCAAACGTGTCAATGAGCTTAGAAGATTAGGTAAAACAGCAATGCGTAACTTGAAGGATTCATCAATCGACTCGGACGATGACGACAATGGCGATTCCAGTTTCAAAAGTGAAACCGCCGGCACTGATTCTGATGATTCAGCCGCGAAAAAATTGTACAAATGCCAAAAGTGTCCTAATGAGTACACTTCGTACCGGGCGTTAAATTCGCACATGAGGTTTCACAAACGGGATAGTTTAAAAGATGAACCACCGGCAAATACAGCGTCGACATCGACCGTGCCAGAGGTACTTGACGAAGACAGCCTTAGTTGTATAAAGTGCGGCAAAACTTATAAATTGAAGATAATGCTGAAGCGTCACCAGCAGATCTGCAAGGTGACGCCGCAAAAGCAGCAGCCACCAGAAAAGCAGCCAACGCCTCTAAAACAACAAACGCCACAAAAACAGCCAACACCACAAAAGCAACAAACACAGAAGGTGACGCCCCTGAAGCTACAGAATCTACCGCAGAAGCAATCAACGCCGCCGGAGTCGCCGCAAAAACAGTTGCTCGTGTGCCTCGAGCCCGTTGACGGCAAGCACAACGTGAAAGTGGAGTGTGACATCTGTTCCTCAAAGTTCAAAACTTTGGAAAACTTAAACAAGCATTTGAGGGTTGTTCACGCAGCCGCGCCTAAAAGGTACTCTGCTCGCGCAGCCGGCTCTGTCTCCGTCACTTGCATCTACTGCCGCGAGTCTTTCGACGACTATTACGTACACAATGCCCACTTTAACATGTGCCCTAAAAAGGACAGTCGGGAAACGTTCAAGTGCCCTCTTTGCTTGGTGGTGTCGTTTAAGAAGTTGGCGTACTTCGCGCACATAAAGAATAATCACTTCGAGCCGGAGACACGTTCACAGCTGAACTCTAAGGAGGAGGATCTCAAGTGCCGGTTCTGTAACAAGCAACTCGCGACTCAGCAGCTGCTGATCACGCATTTGGCGGCGCATATGTCCAACATCGACGAGGCAGTTGTCAGCGATGAAAACAGAACCGTAGTGACGCCTAACACATCTACACCTGAGACATCGAAAACCACACTAAACTGCGTTCACTGcaaaaaagaatttaaatataaacgttCATTGCTGAACCACGAACTGTCGTGCACGAAACGAGAGGACGAACCGGAGGGGAAAGACGAAGAGGATGCGAACGAAGCGGATTCCAGTCAGGATGAGGTGGACGACAACACGTGCGATATCTGTGAGAAGCAGTTTTCTTATAAGGCGTTGTTGTTGCACCATAAGCGGACCAAACACACCATGTgcgctggggttaagagagccAGTATCACACTCAAAGATTGTGCGGTGAAGTGCATGATTTGCGACATTGATATGAAGGTCAAGGACATACACGCGCACAATAAGGGGCATATATCGATGAACATGAAGCCGCGCAATATCTACACGTGCGGCGAATGCGGAGAATTCTTCAAGAATTTAAGCGCGCTCGCCACTCACATCAAATTTGTACACAGATTAAAAAAGGAGACACCTAATGCAAAAAAGTACCAAGGTATTGACCCTTCGGCGTTCTGCGAAGTAGTGGTGGCAAAGACGGAGCCCCAAGAGTGGCCGCAAGGCGACTTCAGTTCTGTGCCAGATGGTGTGGTGAAGATCGAAGGCATGGCCAATGCCGAGCCCACTGCGTTTGTATGCCCCACTTGCGGCAAAAAAATGCCTTCAGCCACATCTCTGAGGTGTCATATGGCCTGCCATGTGCGTTACGCTGGAGCAGCCACTGGGAAACTCGAATGCTTCGTCTGCAAAGAGACATTCAGATTTCAAGTGCACTATAAGATGCACATGCGCGTGCACTACAACGACACCAACCTGGACCCGAAGTTCCTCACGTGCTCCATCTGCAACCGCAAGAGCAAGAACCTCCGCGCCGCCCGCGCACACATGGTCTTCCACAAGCAAACTCGTTTCCAGATCAAAGACTATCAGTGCTCATTGTGTAAAAAAGTATTTCAAAACAGGAGAGTGTACCTCTACCATATGTCTGTACATCAAAGAAGGGGAGATAGTGCGGGACTAGGACCGGGAATACCTAAAGAGGGCGATAAGACCCTGGTCGACACTCTTACTTGTGAGCTGTGCGGGAAGGTGTGCGACTCGGAGGTGTCGCTCAAGCACCACATCATCTGGCACAAGTCGAAAGGGTCGCTGTACGGCGCGCGACACGAGTGCCATATCTGCAACGTGCAGTTTACCAACAAGCGCACGCTCACCCTACACATACGCACGCACTACGAGAACGACAACGGCCCGTACAAATGCCACCTCTGCGAAAAGGGTTTCACAGACGAAGATTACTACCGTAGACATTTGAAATCGCACAATTTTGACCACACGTCCCATAAGAAGCGTATAGAAAGACTACGAAAAGATCAAGTTAAATGTCCGATTTGCTCGCGGTATTATCCAGATTTGGTGAAGCTTATTCGACATCTAAAACGAACTCATCCTGAGAGCAAAATGATCAAAGCGGATCCGGATGCACCACCGCAACGCTTCTATCCATGCCAGCTGTGTGCTAAAGTATTTATGGATGAACGACGACTACAGTTCCATAAGGAGGCTCATCTGAGAAAACCAGTATTGTTCAAATGTAAGTTTTGCGGTAAAAAGACAATATCGCTGAAGTCACATAGACTTCATATAAAAGCTCATTTGGCCTCAAAGCACATCGACGAGCCGTTAAAGTGTCCACACTGTAGTGAAACCTTCGTGAAAGGTTACGGGTTGCATCACCACCTGCGTGACGTGCATGGCATCAACGAGACGTGGATTGCTGATAGAACGGAAGAGGATCTCAATGGACCACTCAAAGACCTTCAATGTTCCGTGTGCCATAAAATATTAGCTAGTAAAGGCAACTTCCAGCGACATATCGACTACCATAACTCATTGAGATGTAATTATTGTTTCCAATACTTTAGTTCGCTCCGATTTCTTGAGGGTCATCTATCTTTCATGTGTGAAAAAAAGAAATTGGTGGGCGAAACAGAAGTTTACCCAAAGCGAGTAAAATGTCACGTTTGCTACAAAGCTTTCCACTTACAAGTGAAACTGGATTGCCATTTGCGGACACAGCACGGCATCGCCGTGACAAAGGAGGCGTCGGCCGGTAAGCAGGAGATCGTTTGCGACTATTGTTTCAAAGTGTTCGAAAATGAATACGCGTTGAGCACACACAAGATTTACCACAGAACCATAGGCTACTATGGATGTAGGTACTGCTCCAAAAAATTCAACACATTGACACTTTATAGGAGACACAAAACTACTCATCTATATCTCTTGAATGTTGACAATCCCACAAAATGTGACCATTGCGACGAAAGGTTCGTGGCGTTCAGAGACATGATCACGCACATGAAAGACGAACACGGCGACGACAGCGAGTGGATCGTGATGCCTAAAGACTCTATAGAGGAAAAGTGCGATATCTGTAACAAAACATTCTTCAATTTGCACAAACATTTGTCCTACCATGAAGAGaataaatgtaagaaatgtGGGGAATATTTCTATTCTGTGGTCGATTTTGATAACCACCTTTGCGCTATAGAGAGCGACGACGAAGGAAactcaaattataataatggtGATAAGGCCAAATACGAGGAATGTAACTTCTGCTTTAAACCTATCACAAGCACTAACTCGAAGCTAAAACACGATAAAATACACAGGGGTTCCGGGTCGATATCGTGTCGCTTCTGCCGTCTCAAATTTAAAACCATAGACGCTTTTAACATACATGCTTTCACCCACCGAAGTAGTAAGTATAATAAGAAGCCGATTAAGTGTCGTCAGTGCGGCGAGAAGTTCGTCAAATACGGACCTTTCATAAAGCACATGCGTAACGTGCACAAGTCCGccttaaaaatacattatcgaGCGACCGTGAAGCCTGAGCGGTGTGTTGTGTGCGGCGACGATTTCCCCAACCTGCACAATCACTATCGGGCACACCTTCTGAACCAGTGTCAACAATGCCGGAAATATTTTacctcatacaaaatatttactaaGCACGAATGCGACAAAGAGGACAGTGATCCGTCAAAAGTATTCACTTGTGATGAGGATTTAGTAACTCTCATAAACTCCTACGTGCCGAAAGATGAGAAGAATAATGAGAAGTTGTATGGAGAGAGCTGTGACGAGGACGATGGTCCAGAGGAAAATGGCACTAATGATGACAATGAAGTGTATTCTCAAGATGAAGAAGCTGATGTAAAGAAGTTCGACACATTCAAATCCCCCATTATATCTGATGTCCTTTCTCTGTATCAGAAGGAGGAAGTGGCCAGCCAGGAAAGTGACAGTAACAGTCAAACAGAGGATAAAGACGTGTATGTTATCAGCAGTGATGAAGAATCGGCGGATGTCGATCACCGCTCCCCAATCGTGCTTGACGACTGA
Protein Sequence
MALELGKCRLCLKLGDFYSIFTVDNGVQLAEMVMECSRVKIYEGDGLPDKVCSECIQKLSGAYIFKQQCERADQDLRRNYVPPPGFELSPNRQSSDSAFSTHTEYSNVNKSISTEGKVTTASTDRKRRTGSDVNDDRHDYRTNTKRESLTTPSKKPKYMNTSMDTDDDDNGGSLTAESVCTEPNEITPKNEFKCTKCAKEFKTIYGLNNHMRSHRMDKLEGTTTPTSTARGRSIESDNASSSSRQDYPSSTKRVNELRRLGKTAMRNLKDSSIDSDDDDNGDSSFKSETAGTDSDDSAAKKLYKCQKCPNEYTSYRALNSHMRFHKRDSLKDEPPANTASTSTVPEVLDEDSLSCIKCGKTYKLKIMLKRHQQICKVTPQKQQPPEKQPTPLKQQTPQKQPTPQKQQTQKVTPLKLQNLPQKQSTPPESPQKQLLVCLEPVDGKHNVKVECDICSSKFKTLENLNKHLRVVHAAAPKRYSARAAGSVSVTCIYCRESFDDYYVHNAHFNMCPKKDSRETFKCPLCLVVSFKKLAYFAHIKNNHFEPETRSQLNSKEEDLKCRFCNKQLATQQLLITHLAAHMSNIDEAVVSDENRTVVTPNTSTPETSKTTLNCVHCKKEFKYKRSLLNHELSCTKREDEPEGKDEEDANEADSSQDEVDDNTCDICEKQFSYKALLLHHKRTKHTMCAGVKRASITLKDCAVKCMICDIDMKVKDIHAHNKGHISMNMKPRNIYTCGECGEFFKNLSALATHIKFVHRLKKETPNAKKYQGIDPSAFCEVVVAKTEPQEWPQGDFSSVPDGVVKIEGMANAEPTAFVCPTCGKKMPSATSLRCHMACHVRYAGAATGKLECFVCKETFRFQVHYKMHMRVHYNDTNLDPKFLTCSICNRKSKNLRAARAHMVFHKQTRFQIKDYQCSLCKKVFQNRRVYLYHMSVHQRRGDSAGLGPGIPKEGDKTLVDTLTCELCGKVCDSEVSLKHHIIWHKSKGSLYGARHECHICNVQFTNKRTLTLHIRTHYENDNGPYKCHLCEKGFTDEDYYRRHLKSHNFDHTSHKKRIERLRKDQVKCPICSRYYPDLVKLIRHLKRTHPESKMIKADPDAPPQRFYPCQLCAKVFMDERRLQFHKEAHLRKPVLFKCKFCGKKTISLKSHRLHIKAHLASKHIDEPLKCPHCSETFVKGYGLHHHLRDVHGINETWIADRTEEDLNGPLKDLQCSVCHKILASKGNFQRHIDYHNSLRCNYCFQYFSSLRFLEGHLSFMCEKKKLVGETEVYPKRVKCHVCYKAFHLQVKLDCHLRTQHGIAVTKEASAGKQEIVCDYCFKVFENEYALSTHKIYHRTIGYYGCRYCSKKFNTLTLYRRHKTTHLYLLNVDNPTKCDHCDERFVAFRDMITHMKDEHGDDSEWIVMPKDSIEEKCDICNKTFFNLHKHLSYHEENKCKKCGEYFYSVVDFDNHLCAIESDDEGNSNYNNGDKAKYEECNFCFKPITSTNSKLKHDKIHRGSGSISCRFCRLKFKTIDAFNIHAFTHRSSKYNKKPIKCRQCGEKFVKYGPFIKHMRNVHKSALKIHYRATVKPERCVVCGDDFPNLHNHYRAHLLNQCQQCRKYFTSYKIFTKHECDKEDSDPSKVFTCDEDLVTLINSYVPKDEKNNEKLYGESCDEDDGPEENGTNDDNEVYSQDEEADVKKFDTFKSPIISDVLSLYQKEEVASQESDSNSQTEDKDVYVISSDEESADVDHRSPIVLDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00858785;
90% Identity
iTF_01359082;
80% Identity
-