Lcon024211.1
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- -
- Assembly
- GCA_949316025.1
- Location
- OX438930.1:24163661-24166317[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.75 64 5.2 0.1 2 23 11 33 10 33 0.91 2 23 0.00057 0.048 15.0 0.1 1 23 55 78 55 78 0.91 3 23 6.9e-07 5.8e-05 24.2 0.6 1 23 83 106 83 106 0.94 4 23 1.2e-05 0.001 20.3 1.4 1 23 112 135 112 135 0.94 5 23 2.8e-05 0.0024 19.1 0.5 2 23 141 163 140 163 0.95 6 23 6.8e-05 0.0058 17.9 1.8 1 23 167 190 167 190 0.97 7 23 0.21 17 7.0 0.2 2 23 197 218 196 218 0.96 8 23 0.084 7.1 8.2 2.6 1 23 224 246 224 246 0.96 9 23 0.0002 0.017 16.4 2.7 1 23 294 316 294 316 0.96 10 23 0.34 28 6.3 0.0 2 20 344 362 343 363 0.89 11 23 0.014 1.1 10.7 1.8 1 23 386 409 386 409 0.96 12 23 0.0001 0.0084 17.4 0.5 1 23 414 437 414 437 0.96 13 23 0.0077 0.65 11.5 2.1 1 23 442 465 442 465 0.96 14 23 4.9e-05 0.0041 18.4 0.2 2 23 468 490 468 490 0.97 15 23 0.29 24 6.5 2.2 1 20 496 515 496 517 0.93 16 23 0.39 33 6.1 0.8 1 23 571 594 571 594 0.93 17 23 6.6e-05 0.0056 18.0 0.2 2 23 667 689 666 689 0.94 18 23 2.4e-05 0.002 19.3 0.6 3 23 696 717 695 717 0.94 19 23 0.024 2.1 9.9 7.6 2 23 722 743 721 744 0.93 20 23 0.04 3.4 9.2 3.9 1 23 749 772 749 772 0.97 21 23 1.1e-05 0.00097 20.3 5.0 1 23 776 799 776 799 0.97 22 23 0.0004 0.033 15.5 0.3 2 23 806 827 805 827 0.96 23 23 5.7e-05 0.0048 18.2 0.6 1 23 833 855 833 855 0.97
Sequence Information
- Coding Sequence
- ATGCAAATAAAAGTTGACACATCTACACTGTCTTGCAAAGTTTGTTTAGAGAATATAAATGATTTAGATTCGTTGTTTAAACATTTAATTGATGAACACAAAGCTAGATTCGATAAATCTGTAGGGGACTACATGCAAGAGTTCAAATTAATCGAGGAAAACTTTGCTTGTCCGTATTGCGGGGAAGTTTATCGATATTTTGGTTTGCTGCTTAGACATGTGAGTGGAACGCACACCAACAATAAATTCATATGTACATACTGCGGAAAATCTTTTAGAACCAATCCGAACTTACGGGCTCACGTTTTCAGTTGGCACAATACTATGGCCAGGCATAAATGCGATTACTGTAATCTCGTATTCACAACTAACAACAACCTAAAAGTGCATTTGGGTCGAGCGCATGGCAGCAAAGTGGTCCAGTGCACTGAATGCGAGGAGAAGTTCACTACGCAGTACTGGATGCGTAGGCACATGTTAAACGCGCACGGAGCTGGCCATAAGTGCTCTTATTGCGGTAAAGCGTACGTGAAAAACTCGGCAATGGTGAACCACGTCAGGCGGTTTCACTTGAAGGAAAAGAACGTTGAGTGTTCAGTTTGCTTGGAAAGGTTCTTCGACGTACAACGCCTCAAGATCCACATGGTGAAACATGTCGGCGAGAGAAACTTCCACTGCGATGTATGTGACAAAAAGTTTCTTTGGAAAAAGAATCTTAGAGGACACATGTCTTCACATAATAAAAACAGCCATAATCAATTACCAACGCATGAATATCCGCCAGGCCCGTACGAAGGCTGTATGTCTGAGCGGCGGCGAAAAAACTTGAGAGTAATCTTCAACCATACCACAGTGATGCCATTCAAATGGCGCGGGAAGTATCTATGTTTTTATTGTGGCAAGAGCTATACGGAATATGACGAGTTCAAAAAGCACACGAAATCCCACGGCGACTGTAATACTAAAGATTATGCTCTCAGAATGATCAAAGGAAGCCACATCGAGATAAAGATTGATGTTTCTGAAATTGTTTGTGATATTTGCAACGAGCCTTTTGACAGATTCGATGAAATTGTCGATCATCTTATATGTAAACACAAATTAGAGTATGATAAGAACGTAGACATACCCTATCAGGAATATAGATTAGCAGATTTTAGGTGTTTGCACTGCGAGCAACAGTTCTCTTACTTCGGGTATTTGGTGAACCATGTTAATAATGCGCATcctcaaaatagttttatatgcGACGATTGTGGTGTCAGCTTTAATAAGAAGCGTGATCTGGCTGTACACTTTAGGAATTACCATCGTCAAGGCGGATACCCTTGCGATCAGTGTTTACTGAATTTTGAAACTTTCCATACTTTACGCAGACACCAGAACAATGTTCATTATCGACAGTGTAACAGCTGCGGTTTACGTTTTGCATCTTTGTCGCTCCTACAGAAACATATTAATGTTGACCACCCAGACGATGGCagttataaatgtaattactgctCCAAGGAACTACATTCAACTCAAGGTTTAAATCAGCACAAAAGTAAATGCAAAGTGAAACTGATCACTCAGGTAGAGCCCAGCAATTCCGTTACTCCAGTAGATAGTATTGAAGCAAGAAAGAATTTAAATCTGAAACAAATGAGGCAGAATATTCAATGTATTCTTAATATGTCGACGGCAATTCCATTCAAATTTTTCTCAAAATACACCTGCTTTTATTGCTCTTCAAAATATGTGGAATTTGAGGAGTTAAGGAATCATACTGCTTTGGAGCATCCGGTATGCGATATTAAGTCAAAATACATGAGTAAGTGTAAAGGTGAAAGAGTCTCAGTTAAGATTGATGTATCAGTACTTGCTTGCAAATTGTGTTGTCTTCCAATGCTCGATTTAAACGAATTGACGGACCACTTGATATGTGAACATAAGGCCAATTACGACAAGTCGATAACTGGGTGTTTGGAACCATTCAGGATCGTAAAAGATAACATCCCATGCCCATTGTGTACGACGGCTTTTCGATACTTTAGCACGCTCCAGCGACATATGAATGCTGtacatagtaataataataggaTATGTGATTTCTGTGGTAAGAGTTTTCGTAATGTCACCAATCTCAAAGTCCATATTTCGTACACACATACAGGCACTTGCGAATGTCATATATGCGGCGTTAAATACAAGAATCAGTGGTGTCTCGCTCGCCACAAAGCGAAACACCACGATGTCAAGGACTACAAGTGTACGAAATGTGCAGAGCAGTTCCATTCCCAGTACCAGAGGCAAAAACATTTGATCAAAGTGCACGATGAAGGCCACAAGTGTACGTATTGCGGGAGAATGTTCACCCGGAATTCCTTCATGAAGGATCACATACGAAGAACACACTTGAAAGAGAAAAATGTTCCATGTTCGGTGTGTAATGAAAAGTTCTTTGACAACTACCTTCTGAGGATGCATATGGTTAAGCATGAGGGTGAGAGGAAGTTTACCTGCGAAGTGTGTGGCAAAGCGTTCTTGAGACGAAGTAATCTTAGTTCACACAAGGAAATGCACAAGAAATACGGTCATACTCATGTATAG
- Protein Sequence
- MQIKVDTSTLSCKVCLENINDLDSLFKHLIDEHKARFDKSVGDYMQEFKLIEENFACPYCGEVYRYFGLLLRHVSGTHTNNKFICTYCGKSFRTNPNLRAHVFSWHNTMARHKCDYCNLVFTTNNNLKVHLGRAHGSKVVQCTECEEKFTTQYWMRRHMLNAHGAGHKCSYCGKAYVKNSAMVNHVRRFHLKEKNVECSVCLERFFDVQRLKIHMVKHVGERNFHCDVCDKKFLWKKNLRGHMSSHNKNSHNQLPTHEYPPGPYEGCMSERRRKNLRVIFNHTTVMPFKWRGKYLCFYCGKSYTEYDEFKKHTKSHGDCNTKDYALRMIKGSHIEIKIDVSEIVCDICNEPFDRFDEIVDHLICKHKLEYDKNVDIPYQEYRLADFRCLHCEQQFSYFGYLVNHVNNAHPQNSFICDDCGVSFNKKRDLAVHFRNYHRQGGYPCDQCLLNFETFHTLRRHQNNVHYRQCNSCGLRFASLSLLQKHINVDHPDDGSYKCNYCSKELHSTQGLNQHKSKCKVKLITQVEPSNSVTPVDSIEARKNLNLKQMRQNIQCILNMSTAIPFKFFSKYTCFYCSSKYVEFEELRNHTALEHPVCDIKSKYMSKCKGERVSVKIDVSVLACKLCCLPMLDLNELTDHLICEHKANYDKSITGCLEPFRIVKDNIPCPLCTTAFRYFSTLQRHMNAVHSNNNRICDFCGKSFRNVTNLKVHISYTHTGTCECHICGVKYKNQWCLARHKAKHHDVKDYKCTKCAEQFHSQYQRQKHLIKVHDEGHKCTYCGRMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHEGERKFTCEVCGKAFLRRSNLSSHKEMHKKYGHTHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01430117; iTF_00429230; iTF_00428348;
- 90% Identity
- -
- 80% Identity
- -