Tjap016239.1
Basic Information
- Insect
- Theretra japonica
- Gene Symbol
- -
- Assembly
- GCA_033459515.1
- Location
- CM065948.1:16998489-17000750[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 8.1e-05 0.0052 17.5 0.7 2 23 11 33 10 33 0.95 2 19 7.1e-05 0.0046 17.6 1.9 1 23 37 60 37 60 0.97 3 19 0.028 1.8 9.5 0.2 2 23 67 88 66 88 0.96 4 19 0.061 3.9 8.4 1.5 1 23 94 116 94 116 0.93 5 19 0.00036 0.023 15.4 2.5 1 23 157 179 157 179 0.96 6 19 0.27 17 6.4 0.0 2 20 207 225 206 226 0.90 7 19 0.0095 0.61 10.9 1.8 1 23 249 272 249 272 0.96 8 19 0.0001 0.0066 17.1 0.5 1 23 277 300 277 300 0.96 9 19 0.019 1.2 10.0 0.7 1 23 305 328 305 328 0.96 10 19 0.00011 0.007 17.0 0.2 2 23 331 353 331 353 0.96 11 19 0.05 3.2 8.7 1.5 1 20 359 378 359 380 0.94 12 19 0.65 42 5.2 0.7 1 23 434 457 434 457 0.92 13 19 1.6e-05 0.001 19.7 0.2 2 23 530 552 529 552 0.94 14 19 1.2e-06 7.8e-05 23.2 0.4 3 23 559 580 558 580 0.94 15 19 0.0082 0.53 11.1 5.9 2 23 585 606 584 607 0.92 16 19 0.00035 0.023 15.4 2.3 1 23 612 635 612 635 0.97 17 19 8e-06 0.00051 20.6 5.0 1 23 639 662 639 662 0.98 18 19 0.0011 0.071 13.9 1.3 2 23 669 690 668 690 0.96 19 19 1.6e-05 0.001 19.7 0.7 1 23 696 718 696 718 0.98
Sequence Information
- Coding Sequence
- ATGGGACGCGCCCACGGCAGCAAGGTGGTCCAGTGTGGCGAGTGTCCGGAGAAGTTTACTACACATTACTGGATGCGGCGTCACATGCTCAACGCGCACGGGGCCGGTCATAAGTGCTCTTACTGTGGCAGAGTTTACGTCAAGAACTCTGCTATGGTCAACCACGTCAGGCGGTTCCATCTTAAGGAAAAAAACGTCGAGTGTTCAGTTTGCTTGGAACGTTTTTTCGACGCTCAACGCCTGAAGATCCATATGGTGAAGCATGTCGGTGAGAGAAACTTCCACTGCGACGTGTGCGGCAAAAAGTTTCTTTGGAAAAAGAACCTTAGAGGACACATCGAGAACCATTTGTTTTCAGATGAATATCCGCCAGACCGGTATGAAGGCTGTGCGTCTGAGCGACGGCGGAAAAACTTGAGACTAATCTTCAACCATACGAGTGTGATGCCATTCAAATGGCGTGGGAAGTATCTGTGTTTCTATTGCGGTAAGAGCTACACGGAATACGTCGAGTTCAAAAAACACACCAAGTCTCACGGGCATTGCGACACAAAAGATTACGCTCTAAAGATGATCAAAGGCagtcaaattgaaataaagattGATATATCTGAAATCGTCTGTGATATATGCAACGAACCGTTTGATAGATTTAGAGAGATTATCGACCATTTAATTTGTAAGCATAAATTGGAATATGATAAAAACGTGGATATACCCTACCAAGAGTACAGATTGGCCGATTTTAGATGTTTGCACTGTGAGCAACAGTTCTCATACTTCGGTTACTTAGTGAATCATGTCAATAATGCACATCCCCAGAACAGTTTCATATGCGACGAGTGCGGCGTTAGTTTTAACAAAAAGAGAGATCTGGCTGTTCATTTTAGAAACTATCATCGACAGGGTGGTTATCCTTGCGATCAGTGTCTTCTAAACTTTGAAACATTTCTTACTTTACGTAGACATCAGAACAATGTCCATTACCGTCAATGCAACAGCTGCGGCGTTCGTTTCGCTTCTCTATCTCTCTTACAGAAACACATAAGCATTGACCACCCAGACGACGGAAGCTATAAGTGCAACTACTGCTCCAAAGAACTGCATTCTGCTCAGGGTTTAAACCAGCATAAGAGTAAATGCAAAGTGAAACAGATTACTCAGGTCGAAGCTACCAAATCTCTTGTACCGGTAATAACCCTCGTAGCAAAGAAAAAAGttaacttaaaacaaataagACAGAATATCCAGTGTATACTTAATATGTCAACAGTAACTCCTTTTAAGTTTTTCTCAAAATTCACGTGTTTTTATTGTTCTTCTAAGTATGTGGAATTTGAGGAGCTAAAGGATCACACTGCATTAGAACATCCGGTATGCGAACTTAAGTCCAAATACATGAACAAATGCAAGGGTGATAGAATTTCAGTCAAGATTGAAATATCAGAGCTAGCCTGTAAATTGTGTTGTTTACCGATGCCCGACTTTAACGCGCTCACTGACCACTTGATAGCTGAACACAAGGCTAACTACGATAAATCTGTAACAGGTTGTCTAGAACAATTCAGGATAGTTAAGGATAACATCCCGTGCCCTCAGTGTGGCACAATGTTCAGATACTTCAGTACGCTCCAACGGCATCTGAATGCAGCTCACAGTAATAATAACAGAATATGCGATTTCTGCGGTAAGAGTTTTCGTAACGCCTCCAaccttaatatacatatttcatacaCTCACACGGGCACCTGCGAGTGTAACATATGCGGCACTAAGTATAAGAACCAATGGTGCCTGGCGCGCCACAACGCGAAGCACCACGATGTTAAAGACTACAAATGCACAAAGTGCTCTGAAAAGTTCCCCTCCCAGTACCAGAGGCAAAAGCACCTCATCAAAGTGCACGACGAAGGTCACAAATGCACGTATTGTGGTAGAATGTTCACAAGGAATTCATTTATGAAGGATCACATACGGAGAACGCATTTAAAGGAGAAAACTGTACCATGCTCGGTTTGTAATGAGAAGTTCTTCGACAAATACCATGTGAAGTTGCATATGGTCAAACACGAAGGTGAGAGGAAGTTCACTTGCGAGGTTTGTGGCAAGGCTTTTTTGAGAAGAAGTAACCTTAACTCGCACAAAGAGATGCATAAAAAGTATGGTCATGTCTAG
- Protein Sequence
- MGRAHGSKVVQCGECPEKFTTHYWMRRHMLNAHGAGHKCSYCGRVYVKNSAMVNHVRRFHLKEKNVECSVCLERFFDAQRLKIHMVKHVGERNFHCDVCGKKFLWKKNLRGHIENHLFSDEYPPDRYEGCASERRRKNLRLIFNHTSVMPFKWRGKYLCFYCGKSYTEYVEFKKHTKSHGHCDTKDYALKMIKGSQIEIKIDISEIVCDICNEPFDRFREIIDHLICKHKLEYDKNVDIPYQEYRLADFRCLHCEQQFSYFGYLVNHVNNAHPQNSFICDECGVSFNKKRDLAVHFRNYHRQGGYPCDQCLLNFETFLTLRRHQNNVHYRQCNSCGVRFASLSLLQKHISIDHPDDGSYKCNYCSKELHSAQGLNQHKSKCKVKQITQVEATKSLVPVITLVAKKKVNLKQIRQNIQCILNMSTVTPFKFFSKFTCFYCSSKYVEFEELKDHTALEHPVCELKSKYMNKCKGDRISVKIEISELACKLCCLPMPDFNALTDHLIAEHKANYDKSVTGCLEQFRIVKDNIPCPQCGTMFRYFSTLQRHLNAAHSNNNRICDFCGKSFRNASNLNIHISYTHTGTCECNICGTKYKNQWCLARHNAKHHDVKDYKCTKCSEKFPSQYQRQKHLIKVHDEGHKCTYCGRMFTRNSFMKDHIRRTHLKEKTVPCSVCNEKFFDKYHVKLHMVKHEGERKFTCEVCGKAFLRRSNLNSHKEMHKKYGHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00859693;
- 90% Identity
- iTF_00819391;
- 80% Identity
- -