Dpor001774.1
Basic Information
- Insect
- Deilephila porcellus
- Gene Symbol
- -
- Assembly
- GCA_905220455.1
- Location
- LR999971.1:17092629-17094950[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 7.9e-05 0.0058 17.4 1.0 1 23 4 27 4 27 0.95 2 19 4.8e-05 0.0036 18.1 1.1 2 23 33 55 32 55 0.95 3 19 6.6e-05 0.0049 17.6 1.9 1 23 59 82 59 82 0.97 4 19 0.017 1.3 10.0 0.3 2 23 89 110 88 110 0.97 5 19 0.00018 0.014 16.3 2.4 1 23 149 171 149 171 0.96 6 19 0.28 21 6.2 0.3 2 20 199 217 198 221 0.90 7 19 0.015 1.1 10.2 0.5 1 23 241 264 241 264 0.96 8 19 9.4e-05 0.007 17.2 0.5 1 23 269 292 269 292 0.96 9 19 0.024 1.7 9.6 0.6 1 23 297 320 297 320 0.96 10 19 4.7e-05 0.0035 18.1 0.2 2 23 323 345 323 345 0.97 11 19 0.046 3.4 8.7 1.5 1 20 351 370 351 372 0.94 12 19 0.56 42 5.3 0.7 1 23 426 449 426 449 0.92 13 19 8.1e-06 0.0006 20.5 0.1 2 23 522 544 521 544 0.94 14 19 3.2e-06 0.00024 21.8 0.5 3 23 551 572 550 572 0.94 15 19 0.0056 0.41 11.6 5.0 2 23 577 599 576 599 0.91 16 19 0.00032 0.024 15.5 2.3 1 23 604 627 604 627 0.97 17 19 6.5e-05 0.0048 17.7 5.3 1 23 631 654 631 654 0.98 18 19 0.001 0.075 13.9 1.3 2 23 661 682 660 682 0.96 19 19 3.7e-05 0.0027 18.4 0.3 1 23 688 710 688 710 0.96
Sequence Information
- Coding Sequence
- ATGGCGAGGCACAAGTGTGACTATTGCGCTCTAGTTTTCACGACAACTAATAATTTAAAAGTGCACATGGGACGCGCCCACGGCAGCAAGGTGGTCCAGTGTAGCGAGTGTCCGGAGAAATTTACTACACATTATTGGATGCGGCGACACATGCTCAACGCGCACGGGGCCGGTCATAAGTGCTCTTACTGTGGCAGAGTTTACGTCAAGAACTCTGCTATGGTTAACCACGTCAGGCGGTTCCATCTTAAGGAAAAAAACGTCCAGTGTTCAGTTTGCTTGGAACGGTTCTTCGACGCTCAACGTCTGAAGATCCATATGGTGAAGCACGTCGATGAATATCCGCAAGACCCGTATGAAGGCTGTACGTCTGAGCGACGGCGGAAAAACTTGAGACTAATCTTCAACCATACGAGTGTGATGCCATTCAAATGGCGCGGGAAATATCTGTGTTTCTATTGCGGTAAGAGCTACACGGAATACGGCGAGTTCAAAAAACACACCAAGTCTCACGGGCAATGCGACACAAAGGATTACGCTCTGAAGATGATTAAAGGCAGTCATATTGAAATAAAGATTGACGTTTCTGAAATCGTCTGTGATATATGCAACGAACCATTTGATAGATTTAGAGAGATTATCGATCACTTAATATGTAAGCATAAATTTGAATATGATAAAAACGTGGATATACCCTATCAAGAGTACAGATTGGCCGATTTCAGGTGTTTGCTCTGTGAGCAACAGTTTTCATACTTCGGTTACTTAGTGAATCATGTCAATAATGCACATCCCCAGAACAGTTTTATATGCGACGAGTGCGGCGTTAGTTTTAACAAAAAAAGAGATCTGGCTGTTCATTTTAGAAACTATCATCGGCAGGGTGGTTATCCTTGCGATCAGTGTCTTCTAAACTTTGAATCATTTCTTACTTTACGTAGGCATCAGAACAATGTTCATTACCGTCAATGCAACAGCTGTGGCGTTCGTTTCGCTTCTCTATCTCTCTTACAGAAACACATAAACATTGATCACCCAGACGATGGAAGCTATAAGTGCAACTACTGCTCTAAAGAACTGCATTCAGCTCAGGGCTTAAACCAGCATAAGAGTAAATGCAAAGTGAGACAGATTACTCAGGTGGAAGCTACCAAAGCTGTTGTACCAGTAATAACTCTCGTATCAAAAAAGAAAGTGAACTTAAACCAAATGAGACTGAATATCCAGTGCATACTTAATATGTCAACAGCAACTCCTTTTAAGTTTTTCTCAAAATTCACGTGTTTTTATTGTTCTTCTAAGTATGTGGAATTTGAGGACCTAAGGGATCACACTGCATTGGAACATACGGTATGCGAACTTAAGTCCAAATACATGAACAAATGTAAGGGTGATAGAATTTCAGTCAAGATTGAAATATCAGATCTAGCGTGTAAGTTGTGTTGTTTACCGATTCCCGATTTTAACGCCCTCACCGACCACTTGATAACGGAACACAAGGCTAATTACGATAAATCTGTAACAGGCTGTCTAGAACAATTCAGGATAGTTAAGGATAACATCCCGTGTCCTCAATGTGGAACAGTGTTCAGATACTTCAGCATGCTCCAACGGCATATAAATGCAGTTCATAGTAATAATAACAGAATATGCGATTTCTGCGGTAAGAGTTTTCGTAAAGCCTCCAACCTTAATATACATATTTCTTACACTCACACGGGCACCTGCGAGTGTCACATTTGCGGCACTAAGTATAAGAACCAATGGTGCCTCGCGCGCCACAACGCGAAAATCCACGATGTTAAAGACTACAAATGCACCAAGTGCTCGGAAAAGTTCCCCTCCCAGTACCAGAGGCAAAAGCACCTCATCAAAGTGCACGATGAAGGCCACAAATGTACGTACTGTGAAAGGATGTTCACAAGGAATTCTTTCATGAAGGATCACATAAGGAGAACGCATTTAAAGGAGAAAACTGTGCCATGCTCGGTGTGCAATGAGAAGTTCTTCGACAAGTACCACGTGAAGTTGCATATGGTCAAACACGAAGGTGAGAGAAAGTTCGCTTGCGAGGTTTGTGGAAAGGCTTTTTTGAGAAGAAGTAATCTTAACTCGCACAAAGAGATGCACAAGAAGTATGGTCATGTCTAG
- Protein Sequence
- MARHKCDYCALVFTTTNNLKVHMGRAHGSKVVQCSECPEKFTTHYWMRRHMLNAHGAGHKCSYCGRVYVKNSAMVNHVRRFHLKEKNVQCSVCLERFFDAQRLKIHMVKHVDEYPQDPYEGCTSERRRKNLRLIFNHTSVMPFKWRGKYLCFYCGKSYTEYGEFKKHTKSHGQCDTKDYALKMIKGSHIEIKIDVSEIVCDICNEPFDRFREIIDHLICKHKFEYDKNVDIPYQEYRLADFRCLLCEQQFSYFGYLVNHVNNAHPQNSFICDECGVSFNKKRDLAVHFRNYHRQGGYPCDQCLLNFESFLTLRRHQNNVHYRQCNSCGVRFASLSLLQKHINIDHPDDGSYKCNYCSKELHSAQGLNQHKSKCKVRQITQVEATKAVVPVITLVSKKKVNLNQMRLNIQCILNMSTATPFKFFSKFTCFYCSSKYVEFEDLRDHTALEHTVCELKSKYMNKCKGDRISVKIEISDLACKLCCLPIPDFNALTDHLITEHKANYDKSVTGCLEQFRIVKDNIPCPQCGTVFRYFSMLQRHINAVHSNNNRICDFCGKSFRKASNLNIHISYTHTGTCECHICGTKYKNQWCLARHNAKIHDVKDYKCTKCSEKFPSQYQRQKHLIKVHDEGHKCTYCERMFTRNSFMKDHIRRTHLKEKTVPCSVCNEKFFDKYHVKLHMVKHEGERKFACEVCGKAFLRRSNLNSHKEMHKKYGHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00859693;
- 90% Identity
- iTF_00819391;
- 80% Identity
- -