Lpop002966.1
Basic Information
- Insect
- Laothoe populi
- Gene Symbol
- -
- Assembly
- GCA_905220505.1
- Location
- HG992147.1:19332527-19342009[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-06 0.0088 16.7 0.0 7 35 46 73 42 78 0.88 2 2 0.016 21 5.9 0.0 6 34 207 234 202 245 0.84
Sequence Information
- Coding Sequence
- ATGGACCACGGAATACCTCTTAACATCCACGCCAGGCCTCGTGTCGTCGGACGCCGACCTAACGCCATTGTCAACATAGAAACCGACGTTTTCCAAGAGAAATCATACAAACAGTATTCTTCTCAGCATTTAAGGGATGCATTGATTGCTGTCAAAAAGGGTTACAGTGTATACGCGGCGTCGAATAAGTACGGCGTGCCAAGGAAAACTTTGAGGAATTGGATGGAGAAATATGATATTAAGAGTCAGTTTTCTAAAGaTTTCGCGATAGCCAACGTGCAGTGCCAGTACGACAGTCTGTCAGACACAGAGCACGAGCGGCGGGAGGCGACAGAGACGCAGAAGGCGACGGAGGGGAGGGTCTCTGTCACAGACGACCATACGTACGGCGCGAGAGACGAGCCGCCAGCTTTTATTATTCAACACGTTACTTCAACAGCTCAAACGCAGCCGATTCTGCAGTATCCAGACATTGGTCCGAAGATCATGACTATAGGACCGGGGTACGCGCAGTCTGTGAATGTTATACACGTTGGAGACCGGCCGCAGGTGACACAGTCCTCCCAACCAGCAGAGTTTGGGATGAACAAGCGGATCCGCCGCAGCGAGCAAGTGTTGCGCCAGGCGGCCGACTGTGTGTCACGCGGACTAACCTTCCAGACAGTATCCGAGCAGTTCAATATACCTATTTCAACTATACGATTTTTCATGGCACGTAAGGGGATCCTACCGCGGAGGCGACGCGGAAGAACTACTCATGTGACGCCGGCGTGCAGTAGCCCCGAGCCTCCGTTCCACATGCAACACTTCAAACTGCCTGACATGGTGGCTTTGCCGACGGAGGACGAACAAAACGCTAACTAG
- Protein Sequence
- MDHGIPLNIHARPRVVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKDFAIANVQCQYDSLSDTEHERREATETQKATEGRVSVTDDHTYGARDEPPAFIIQHVTSTAQTQPILQYPDIGPKIMTIGPGYAQSVNVIHVGDRPQVTQSSQPAEFGMNKRIRRSEQVLRQAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRTTHVTPACSSPEPPFHMQHFKLPDMVALPTEDEQNAN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01084198;
- 90% Identity
- iTF_00063524;
- 80% Identity
- -