Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 8.2e-06 0.0059 16.7 0.0 7 35 46 73 42 78 0.88

2 2 0.021 15 5.8 0.0 6 34 206 233 201 242 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	8.2e-06	0.0059	16.7	0.0	7	35	46	73	42	78	0.88
2	2	0.021	15	5.8	0.0	6	34	206	233	201	242	0.85

Coding Sequence: ATGGACCATGGGATACCTTTAAACATCCACGCGAGACCCCGTGTGGTCGGACGACGCCCCAACGCCATCGTGAACATCGAAACGGATGTTTTTCAAGAGAAATCGTACAAACAATACTCGTCGCAGCATTTAAGAGACGCGTTGATTGCTGTCAAAAAAGGTTACAGCGTGTACGCAGCGTCGAACAAGTACGGTGTGCCACGGAAAACTTTAAGGAATTGGATGGAGAAATATGATATTAAGAGTCAGTTTTCTAAAGATTTCGCGATAGCCAACGTGCAGTGCCAGTACGACAGCCTGTCCGATACGGAACAAGACCGGCGGGAAGTGGTAGAGACGCCGGAGCGGGAGGGACGTGTCTCCGTCACAGACGATCATACGTACGGCACGAGAGACGAGCCGCCCGCCTTTATAATACAACACGTTACTTCGACGGCGCCTACGCAACCGATCCTACCGTACCCGGACATCAGGCCGAAGATAATGACTATAGGCCCGGGATATGCGCAGTCCGTGAACGTTATACATGTTGGAGATCGGCCGCAGGTTACGCAGTCATCCCAACCAGCAGAGTTCGGCATGAACAAGCGCATCCGCCGCAGCGAGCAAGTGTTACGGCAGGCTGCCGACTGTGTGTCGCGCGGTCTTACCTTCCAGACTGTGTCCGAGCAGTTTAACATACCTATATCAACAATACGaTTTTTCATGGCACGTAAAGGGATCTTGCCGCAGAGGCGACGCGGACGCACTACTCATGTGACAAGGCCATGCAGTAGCCCCGAGCCTCCGTTCCATATGCAACACTTCAAATTGCCTGACATGGTAGCTCTAAGGACGGACGATGACGATACTACGAACTAA
Protein Sequence: MDHGIPLNIHARPRVVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKDFAIANVQCQYDSLSDTEQDRREVVETPEREGRVSVTDDHTYGTRDEPPAFIIQHVTSTAPTQPILPYPDIRPKIMTIGPGYAQSVNVIHVGDRPQVTQSSQPAEFGMNKRIRRSEQVLRQAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPQRRRGRTTHVTRPCSSPEPPFHMQHFKLPDMVALRTDDDDTTN

Sequence clustering based on sequence similarity using MMseqs2