Lsuf026759.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402569.1:1500907-1507665[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0043 50 5.0 0.0 21 48 269 296 260 299 0.91 2 13 0.0021 25 6.0 0.0 22 48 299 325 294 328 0.92 3 13 0.0041 47 5.1 0.1 21 50 370 399 366 404 0.90 4 13 0.0062 71 4.6 0.0 21 45 427 451 418 454 0.87 5 13 0.0011 12 7.0 0.2 21 48 498 525 495 530 0.90 6 13 0.011 1.2e+02 3.8 0.0 24 46 530 552 527 555 0.91 7 13 0.036 4.2e+02 2.1 0.0 21 48 598 625 595 628 0.91 8 13 0.26 3e+03 -0.7 0.0 26 48 642 664 639 670 0.83 9 13 0.46 5.3e+03 -1.4 0.1 22 43 722 743 714 747 0.83 10 13 1.1e-05 0.12 13.4 0.1 21 46 749 774 741 782 0.89 11 13 0.18 2e+03 -0.1 0.0 23 52 779 808 775 810 0.83 12 13 0.038 4.4e+02 2.0 0.0 21 48 805 832 800 838 0.87 13 13 0.088 1e+03 0.9 0.1 21 44 834 857 831 865 0.88
Sequence Information
- Coding Sequence
- ATGTCTGAAACAGCACTGTGCAGAGTGTGCCTCGCTGATAGCGCCAAGATGCATGCGATCACCAGCTCCCGTTACCAAGAATTGTATGAGAAGCTGACGGGCGAGTCGCTACTATCAGATGACCGGCCTGACTCCCTTTGTACCCTGTGCCACACCCTGGTGCACAGGTTCTGGAGATTCTTTGAGATGTCGCATAATTCAGAGAAGAACCTCACAAAACTGCTTCAATATGGAGTCAAACTAACCCGATTATCAGTAGCTCTGGTTGAGAAACTGAATGTGCACAACTTGTCAGTCACTCCTGTCAAGCACACATCAATATTTGACAGCGTGAAAGAAGAAATCGAAGTGCCTGTCAAGATGGAGAGGTTTTCTGACGAGGGAAAGCTTGCAGATGAAATTGAAGCCTTACCCGCAGCTGAGTCGAACGATGAAGATTCAGAAATGGACCCTCTCGAAGCTGTCAAAATCGATGTTAAAATCGAGCCAATAATTGAACCCAATGTTTCAATAACGCCGTATCCCTGCGAAGATTGCCCTCGTCGGTTCCACACTTCAGAAGATTTGTTGCGTCACCAAAACTGTGTGCATAAAAAAGAACTATGCATAGAGACATCTAATGATCCTGACGATTTAAAAACCAATACAAAAATCAATGAAGAAAATCCATTTGATAATGACAGTGATAGTATACAACGGGACAGTTTAATGCTTTCTTCAGGGGAGAAGTTTACTTGTGTGTTATGTAGAAGGCCGTTCACACAGAAAGGACATTTAAAAACACATATAATGGCTTTCCACACAGGGGAACGGCCATTTGCATGCACTGTGTGTGATAAACGATTTGTACAAAAGAGCAACCTGAAAAGTCATATGAAGACGGTGCATACTGAGGATAAACCATTTACATGTACCAGCTGCAAAGGTGTTTGTAAAGACGAAAGCCATTTAAAAGAACATATGAATATACACCACGGAGATTCTTTAGTAGTTAATTATATTGAAATACTTGAGAATGTGGATGGAAAGCCGTTCGCTTGCGGGCGATGCGGAAAGACATTTACTGCGAAAGCTCATTTAAAATCTCACATAATGGCTATACATACAGGGGAACGTCCATTTGCATGCACTATGTGCGATAAAAAGTACACGCAAAAAAGCCATTTAAGATTACATGCGAAATTGTCGCATGTTGTTGAAAAGCCATTTGCTTGCGACGATTGTGAAATAAGATTTGAAGATGCTAATGATTTGAGAAAACACTCGATAACGCACAGGAATGAGAAATTATATACGTGTACGAGTTGTGATAAAGTCTTCTTATCTGAAAACAACTTGAAAAGACATATGACTTTTCACACTGGATCAACAACAAAGAATGAAGAGATTGATGTAAATCATATTAAAGTTAAGCCATTTGCATGTGTGCTGTGTAGTAGAAGATTTGGATGGAAATCTCATTTAAAATCACATATAATGGCGCTTCATACCGGAGAAAGGCCATATGCATGCTCAGTTTGTGACAAAACTTTTGTCCAACGCAGTAATCTCCGGTTACATGCCAAAGTTGCGCATGGTATTTTTAAACCATTGAAATGCGCAACATGTGACAAAGCATTCCGTAAAGAAAGCAACTTGCAAAAACATATGACTCTTCACGACGAGTCTGTGGACAATGAAGTTGAACTCCAACCAAATAATACAAAATCAAAGCAGTTCCCTTGTGTATTATGTAGTAAGTCATTCGGTTGGAAATCTCATTTAAAAACTCATATAATGGCGCTTCACACTGGAGAAAGGCCATTTGAATGTACCATGTGTGATAAGAAATTCGTACAGAAAAGCTATTTAAGATTCCACATGAAGGTTTCACATCCCGGTGAACGAGCAACTCATATTATCGACTTTGATGGTAGACTGTTCACATGTAATATATGTTCTGTTAAATTCAGTAATAAAGCTAACTATGAGAAACATAAGCAGCTGCATAAAACCACGCCGCCGTTCGTCTGTCTGAAGTGTGATAAGAAATTCAACACAAAAGTTGACATTGACTCGCACTACTTAAGTGTTCATGGTGAGTTACCGTTTTCCTGTGGCACTTGTAACTTAAGATTCGATACCCAAATTGCTTTAAAGCAGCATCAGTCAACCCACATAGAATCTAAACCGTTATCTTGTGAAACATGTAACAGAACGTTCCTCTCTGGAAGCGCTTTAAGAAGGCATTCGGTTATCCACAGCGATGAGAAACCGTTCTCATGCAAAATTTGCAAGAAGACTTTTAAACAGGACCGGGTATTAAGAAAGCATATGCAAATACACACTGAAGAGAAGAAATTTGGGTGTGATATTTGTGATCGGAGGTTTTACCAACGAGGGAACTTGATAAGCCATATGAGGATACATTCAGGGGAGAAGCCGTTTGTGTGTGACCGTTGTGGTAACAGTTTTAATCAGAAAAGTCATCTTCGAACGCATGTTTTGTTTATGCATAGTTCAGATAAACCATTCTCTTGCGGTCTTTGTAATAAGAGGTTTAGGTTAAAGAGTTGTTTGCGGAACCATCAGATGGTACATACTGGTGAGAGACCTTATCCGTGCGATAGGTGTGAGAAAAAGTACTATAAAAAAGGCGAATTGAAATCGCATGTTGCTAAAATGCATTCTTGA
- Protein Sequence
- MSETALCRVCLADSAKMHAITSSRYQELYEKLTGESLLSDDRPDSLCTLCHTLVHRFWRFFEMSHNSEKNLTKLLQYGVKLTRLSVALVEKLNVHNLSVTPVKHTSIFDSVKEEIEVPVKMERFSDEGKLADEIEALPAAESNDEDSEMDPLEAVKIDVKIEPIIEPNVSITPYPCEDCPRRFHTSEDLLRHQNCVHKKELCIETSNDPDDLKTNTKINEENPFDNDSDSIQRDSLMLSSGEKFTCVLCRRPFTQKGHLKTHIMAFHTGERPFACTVCDKRFVQKSNLKSHMKTVHTEDKPFTCTSCKGVCKDESHLKEHMNIHHGDSLVVNYIEILENVDGKPFACGRCGKTFTAKAHLKSHIMAIHTGERPFACTMCDKKYTQKSHLRLHAKLSHVVEKPFACDDCEIRFEDANDLRKHSITHRNEKLYTCTSCDKVFLSENNLKRHMTFHTGSTTKNEEIDVNHIKVKPFACVLCSRRFGWKSHLKSHIMALHTGERPYACSVCDKTFVQRSNLRLHAKVAHGIFKPLKCATCDKAFRKESNLQKHMTLHDESVDNEVELQPNNTKSKQFPCVLCSKSFGWKSHLKTHIMALHTGERPFECTMCDKKFVQKSYLRFHMKVSHPGERATHIIDFDGRLFTCNICSVKFSNKANYEKHKQLHKTTPPFVCLKCDKKFNTKVDIDSHYLSVHGELPFSCGTCNLRFDTQIALKQHQSTHIESKPLSCETCNRTFLSGSALRRHSVIHSDEKPFSCKICKKTFKQDRVLRKHMQIHTEEKKFGCDICDRRFYQRGNLISHMRIHSGEKPFVCDRCGNSFNQKSHLRTHVLFMHSSDKPFSCGLCNKRFRLKSCLRNHQMVHTGERPYPCDRCEKKYYKKGELKSHVAKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00856866;
- 90% Identity
- iTF_00856866;
- 80% Identity
- iTF_00856866;