Lsuf026759.1
Basic Information
- Insect
- Lampropteryx suffumata
- Gene Symbol
- -
- Assembly
- GCA_948098915.1
- Location
- OX402569.1:1500907-1507665[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0003 0.026 15.9 2.3 1 21 174 194 174 197 0.95 2 22 9.3e-05 0.008 17.5 2.0 1 23 244 267 244 267 0.95 3 22 4e-08 3.4e-06 28.1 1.2 1 23 273 296 273 296 0.97 4 22 0.0074 0.64 11.5 5.9 1 23 302 324 302 325 0.96 5 22 2.5e-05 0.0022 19.2 0.5 1 23 345 368 345 368 0.94 6 22 4.5e-05 0.0039 18.5 3.0 1 23 374 397 374 397 0.94 7 22 0.00032 0.028 15.8 0.1 1 23 403 425 403 425 0.97 8 22 0.00039 0.034 15.5 1.9 1 23 431 453 431 453 0.96 9 22 0.029 2.5 9.6 0.8 1 23 473 496 473 496 0.94 10 22 1.3e-06 0.00011 23.3 0.2 1 23 502 525 502 525 0.96 11 22 3.2e-06 0.00028 22.1 1.1 2 23 532 553 531 553 0.96 12 22 0.0028 0.25 12.8 0.7 1 23 573 596 573 596 0.95 13 22 4e-05 0.0035 18.6 2.4 1 23 602 625 602 625 0.97 14 22 7.9e-05 0.0068 17.7 1.8 1 23 641 663 641 663 0.97 15 22 0.0032 0.28 12.6 0.7 1 23 669 692 669 692 0.95 16 22 0.0002 0.018 16.4 0.9 1 23 697 719 697 719 0.98 17 22 0.085 7.3 8.2 0.3 2 23 726 747 725 747 0.91 18 22 2.3e-05 0.002 19.4 2.7 1 23 753 775 753 775 0.98 19 22 2e-06 0.00017 22.8 0.4 3 23 783 803 781 803 0.98 20 22 9.5e-05 0.0082 17.4 2.4 1 23 809 832 809 832 0.92 21 22 0.00014 0.012 16.9 4.2 1 23 838 860 838 860 0.98 22 22 0.0014 0.12 13.7 0.8 1 23 866 889 866 889 0.96
Sequence Information
- Coding Sequence
- ATGTCTGAAACAGCACTGTGCAGAGTGTGCCTCGCTGATAGCGCCAAGATGCATGCGATCACCAGCTCCCGTTACCAAGAATTGTATGAGAAGCTGACGGGCGAGTCGCTACTATCAGATGACCGGCCTGACTCCCTTTGTACCCTGTGCCACACCCTGGTGCACAGGTTCTGGAGATTCTTTGAGATGTCGCATAATTCAGAGAAGAACCTCACAAAACTGCTTCAATATGGAGTCAAACTAACCCGATTATCAGTAGCTCTGGTTGAGAAACTGAATGTGCACAACTTGTCAGTCACTCCTGTCAAGCACACATCAATATTTGACAGCGTGAAAGAAGAAATCGAAGTGCCTGTCAAGATGGAGAGGTTTTCTGACGAGGGAAAGCTTGCAGATGAAATTGAAGCCTTACCCGCAGCTGAGTCGAACGATGAAGATTCAGAAATGGACCCTCTCGAAGCTGTCAAAATCGATGTTAAAATCGAGCCAATAATTGAACCCAATGTTTCAATAACGCCGTATCCCTGCGAAGATTGCCCTCGTCGGTTCCACACTTCAGAAGATTTGTTGCGTCACCAAAACTGTGTGCATAAAAAAGAACTATGCATAGAGACATCTAATGATCCTGACGATTTAAAAACCAATACAAAAATCAATGAAGAAAATCCATTTGATAATGACAGTGATAGTATACAACGGGACAGTTTAATGCTTTCTTCAGGGGAGAAGTTTACTTGTGTGTTATGTAGAAGGCCGTTCACACAGAAAGGACATTTAAAAACACATATAATGGCTTTCCACACAGGGGAACGGCCATTTGCATGCACTGTGTGTGATAAACGATTTGTACAAAAGAGCAACCTGAAAAGTCATATGAAGACGGTGCATACTGAGGATAAACCATTTACATGTACCAGCTGCAAAGGTGTTTGTAAAGACGAAAGCCATTTAAAAGAACATATGAATATACACCACGGAGATTCTTTAGTAGTTAATTATATTGAAATACTTGAGAATGTGGATGGAAAGCCGTTCGCTTGCGGGCGATGCGGAAAGACATTTACTGCGAAAGCTCATTTAAAATCTCACATAATGGCTATACATACAGGGGAACGTCCATTTGCATGCACTATGTGCGATAAAAAGTACACGCAAAAAAGCCATTTAAGATTACATGCGAAATTGTCGCATGTTGTTGAAAAGCCATTTGCTTGCGACGATTGTGAAATAAGATTTGAAGATGCTAATGATTTGAGAAAACACTCGATAACGCACAGGAATGAGAAATTATATACGTGTACGAGTTGTGATAAAGTCTTCTTATCTGAAAACAACTTGAAAAGACATATGACTTTTCACACTGGATCAACAACAAAGAATGAAGAGATTGATGTAAATCATATTAAAGTTAAGCCATTTGCATGTGTGCTGTGTAGTAGAAGATTTGGATGGAAATCTCATTTAAAATCACATATAATGGCGCTTCATACCGGAGAAAGGCCATATGCATGCTCAGTTTGTGACAAAACTTTTGTCCAACGCAGTAATCTCCGGTTACATGCCAAAGTTGCGCATGGTATTTTTAAACCATTGAAATGCGCAACATGTGACAAAGCATTCCGTAAAGAAAGCAACTTGCAAAAACATATGACTCTTCACGACGAGTCTGTGGACAATGAAGTTGAACTCCAACCAAATAATACAAAATCAAAGCAGTTCCCTTGTGTATTATGTAGTAAGTCATTCGGTTGGAAATCTCATTTAAAAACTCATATAATGGCGCTTCACACTGGAGAAAGGCCATTTGAATGTACCATGTGTGATAAGAAATTCGTACAGAAAAGCTATTTAAGATTCCACATGAAGGTTTCACATCCCGGTGAACGAGCAACTCATATTATCGACTTTGATGGTAGACTGTTCACATGTAATATATGTTCTGTTAAATTCAGTAATAAAGCTAACTATGAGAAACATAAGCAGCTGCATAAAACCACGCCGCCGTTCGTCTGTCTGAAGTGTGATAAGAAATTCAACACAAAAGTTGACATTGACTCGCACTACTTAAGTGTTCATGGTGAGTTACCGTTTTCCTGTGGCACTTGTAACTTAAGATTCGATACCCAAATTGCTTTAAAGCAGCATCAGTCAACCCACATAGAATCTAAACCGTTATCTTGTGAAACATGTAACAGAACGTTCCTCTCTGGAAGCGCTTTAAGAAGGCATTCGGTTATCCACAGCGATGAGAAACCGTTCTCATGCAAAATTTGCAAGAAGACTTTTAAACAGGACCGGGTATTAAGAAAGCATATGCAAATACACACTGAAGAGAAGAAATTTGGGTGTGATATTTGTGATCGGAGGTTTTACCAACGAGGGAACTTGATAAGCCATATGAGGATACATTCAGGGGAGAAGCCGTTTGTGTGTGACCGTTGTGGTAACAGTTTTAATCAGAAAAGTCATCTTCGAACGCATGTTTTGTTTATGCATAGTTCAGATAAACCATTCTCTTGCGGTCTTTGTAATAAGAGGTTTAGGTTAAAGAGTTGTTTGCGGAACCATCAGATGGTACATACTGGTGAGAGACCTTATCCGTGCGATAGGTGTGAGAAAAAGTACTATAAAAAAGGCGAATTGAAATCGCATGTTGCTAAAATGCATTCTTGA
- Protein Sequence
- MSETALCRVCLADSAKMHAITSSRYQELYEKLTGESLLSDDRPDSLCTLCHTLVHRFWRFFEMSHNSEKNLTKLLQYGVKLTRLSVALVEKLNVHNLSVTPVKHTSIFDSVKEEIEVPVKMERFSDEGKLADEIEALPAAESNDEDSEMDPLEAVKIDVKIEPIIEPNVSITPYPCEDCPRRFHTSEDLLRHQNCVHKKELCIETSNDPDDLKTNTKINEENPFDNDSDSIQRDSLMLSSGEKFTCVLCRRPFTQKGHLKTHIMAFHTGERPFACTVCDKRFVQKSNLKSHMKTVHTEDKPFTCTSCKGVCKDESHLKEHMNIHHGDSLVVNYIEILENVDGKPFACGRCGKTFTAKAHLKSHIMAIHTGERPFACTMCDKKYTQKSHLRLHAKLSHVVEKPFACDDCEIRFEDANDLRKHSITHRNEKLYTCTSCDKVFLSENNLKRHMTFHTGSTTKNEEIDVNHIKVKPFACVLCSRRFGWKSHLKSHIMALHTGERPYACSVCDKTFVQRSNLRLHAKVAHGIFKPLKCATCDKAFRKESNLQKHMTLHDESVDNEVELQPNNTKSKQFPCVLCSKSFGWKSHLKTHIMALHTGERPFECTMCDKKFVQKSYLRFHMKVSHPGERATHIIDFDGRLFTCNICSVKFSNKANYEKHKQLHKTTPPFVCLKCDKKFNTKVDIDSHYLSVHGELPFSCGTCNLRFDTQIALKQHQSTHIESKPLSCETCNRTFLSGSALRRHSVIHSDEKPFSCKICKKTFKQDRVLRKHMQIHTEEKKFGCDICDRRFYQRGNLISHMRIHSGEKPFVCDRCGNSFNQKSHLRTHVLFMHSSDKPFSCGLCNKRFRLKSCLRNHQMVHTGERPYPCDRCEKKYYKKGELKSHVAKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857253;
- 90% Identity
- iTF_00857253;
- 80% Identity
- iTF_00857253;